Wall clock time and date at job start Sun Mar 29 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47213 * 60.00246 * 11 9 7 13 13 H 1.48502 * 109.47317 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47081 * 299.99875 * 11 9 7 15 15 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 16 16 C 1.34775 * 119.99699 * 85.00331 * 15 2 1 17 17 O 1.21281 * 120.00101 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00148 * 180.02562 * 16 15 2 19 19 H 1.08993 * 115.54709 * 34.32893 * 18 16 15 20 20 C 1.53001 * 117.49869 * 248.62649 * 18 16 15 21 21 C 1.52999 * 117.49812 * 180.02562 * 18 16 15 22 22 H 1.08993 * 117.50156 * 359.97377 * 21 18 16 23 23 C 1.53000 * 117.49381 * 214.97535 * 21 18 16 24 24 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 25 25 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 27 27 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 28 28 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 29 29 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 30 30 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 31 31 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 32 32 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 33 33 H 0.97002 * 120.00479 * 265.00508 * 15 2 1 34 34 H 1.09007 * 117.50064 * 359.97438 * 20 18 16 35 35 H 1.08991 * 117.49950 * 145.01833 * 20 18 16 36 36 H 1.09000 * 109.47276 * 60.00564 * 23 21 18 37 37 H 1.09006 * 109.46849 * 179.97438 * 23 21 18 38 38 H 1.08991 * 109.47582 * 300.00009 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3955 -1.3449 2.7769 8 1 6.0940 -0.8648 2.1076 9 6 5.8586 -2.0037 3.9076 10 7 5.0073 -2.5893 4.7230 11 14 7.6898 -2.0594 4.2718 12 1 8.2061 -0.6756 4.4264 13 1 7.9221 -2.8179 5.5272 14 1 8.3973 -2.7294 3.1512 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7289 -3.5878 19 1 2.3509 -1.7731 -3.6819 20 6 4.0307 -0.3377 -4.1153 21 6 2.7734 0.0894 -4.8745 22 1 2.4920 1.1415 -4.8311 23 6 2.4703 -0.6208 -6.1954 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.7515 -1.7716 1.2056 28 1 1.6053 -0.2618 2.1370 29 1 3.8532 0.4367 1.3574 30 1 3.9993 -1.0730 0.4260 31 1 3.4256 -1.7352 3.1112 32 1 5.3308 -3.0494 5.5132 33 1 2.2490 -1.6319 -1.1526 34 1 4.5768 0.4339 -3.5725 35 1 4.6422 -1.1247 -4.5566 36 1 1.4432 -0.9857 -6.1844 37 1 2.5982 0.0786 -7.0216 38 1 3.1530 -1.4610 -6.3212 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699123642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:14 Heat of formation + Delta-G solvation = -42.772707 kcal Electronic energy + Delta-G solvation = -16981.335263 eV Core-core repulsion = 14244.259241 eV Total energy + Delta-G solvation = -2737.076022 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13100 -38.48854 -37.31836 -36.06576 -33.60920 -32.16659 -29.59722 -29.35236 -26.02667 -25.23281 -23.22489 -22.10167 -21.60645 -20.97515 -19.23096 -18.38626 -17.34315 -16.70432 -16.07002 -15.77956 -15.47800 -15.34899 -15.01939 -14.70943 -14.33049 -14.13279 -13.67789 -13.61073 -13.12562 -12.93926 -12.89105 -12.86151 -12.40413 -12.31689 -12.29293 -12.02231 -11.95237 -11.66073 -11.31349 -11.04972 -10.95643 -10.76004 -10.08267 -9.02863 -7.97280 -5.26751 1.46750 1.49717 1.50588 1.56085 2.17201 2.54689 2.88018 3.36177 3.58101 3.75345 3.81399 3.88786 4.04184 4.13639 4.22212 4.38351 4.42901 4.53943 4.63977 4.74788 4.75687 4.84316 4.88400 4.95790 4.97402 5.06522 5.19844 5.22320 5.24747 5.31268 5.43294 5.46473 5.57517 6.25176 6.57804 7.26128 7.31661 8.06282 8.30886 9.25887 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.004673 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.381314 B = 5989.981137 C = 6832.609231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.065 0.935 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.746 5.746 7 C -0.252 4.252 8 H 0.071 0.929 9 C -0.071 4.071 10 N -0.968 5.968 11 Si 0.974 3.026 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.276 1.276 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.588 6.588 18 C -0.196 4.196 19 H 0.149 0.851 20 C -0.145 4.145 21 C -0.123 4.123 22 H 0.093 0.907 23 C -0.118 4.118 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.005 0.995 30 H 0.024 0.976 31 H 0.376 0.624 32 H 0.253 0.747 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 1.069 -18.829 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.083 0.917 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.384 4.384 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.202 1.202 15 N -0.360 5.360 16 C 0.325 3.675 17 O -0.469 6.469 18 C -0.217 4.217 19 H 0.166 0.834 20 C -0.182 4.182 21 C -0.142 4.142 22 H 0.111 0.889 23 C -0.175 4.175 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.581 1.934 -18.873 20.430 hybrid contribution 0.841 -0.442 0.993 1.375 sum -6.740 1.492 -17.880 19.166 Atomic orbital electron populations 1.22073 0.93569 1.03005 1.02358 1.20825 0.94910 0.96283 0.83480 0.91691 1.21891 0.94589 1.01772 0.97342 1.20745 0.93509 0.94083 0.88865 1.42553 1.04488 1.65358 1.26469 1.19576 0.85240 1.27868 1.05720 0.91107 1.25563 1.02125 1.01002 0.97712 1.69801 1.34734 1.41609 1.15652 0.85215 0.79948 0.77591 0.77029 1.20602 1.21821 1.20176 1.46032 1.66307 1.14700 1.08972 1.20217 0.76237 0.86295 0.84720 1.90648 1.52531 1.17931 1.85836 1.22394 1.04265 1.01905 0.93095 0.83360 1.23170 0.89360 1.03593 1.02118 1.22390 1.00753 0.99291 0.91786 0.88866 1.21398 1.02326 1.00340 0.93415 0.93273 0.90987 0.90554 0.90185 0.90152 0.97748 0.95853 0.79213 0.93831 0.75150 0.90005 0.85315 0.91586 0.91033 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.48 71.98 0.68 -2.78 16 2 C 0.15 4.09 2.58 44.99 0.12 4.21 16 3 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 4 C -0.12 -3.58 4.87 30.59 0.15 -3.43 16 5 C 0.15 6.23 6.15 86.38 0.53 6.76 16 6 N -0.75 -38.23 5.60 -343.46 -1.92 -40.15 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.49 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 10 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 11 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 N -0.71 -17.74 4.53 -442.53 -2.00 -19.74 16 16 C 0.54 14.75 7.58 87.66 0.66 15.41 16 17 O -0.59 -20.82 15.92 -3.03 -0.05 -20.87 16 18 C -0.20 -3.91 5.91 -11.54 -0.07 -3.98 16 19 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 20 C -0.15 -2.70 9.88 30.58 0.30 -2.40 16 21 C -0.12 -2.32 5.92 -10.81 -0.06 -2.38 16 22 H 0.09 2.19 7.67 -2.39 -0.02 2.17 16 23 C -0.12 -1.47 10.19 71.98 0.73 -0.74 16 24 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.02 0.93 7.75 -2.39 -0.02 0.91 16 31 H 0.38 20.12 7.67 -92.71 -0.71 19.41 16 32 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.41 8.65 8.60 -92.71 -0.80 7.86 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 35 H 0.13 1.75 8.05 -2.39 -0.02 1.73 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.07 0.72 7.90 -2.39 -0.02 0.70 16 Total: -1.00 -69.75 320.79 2.22 -67.53 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.47 Total: 30.29 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.35 Total: -6.47 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -3.65 Total: -118.64 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -69.75 2.22 -67.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.759 kcal (2) G-P(sol) polarization free energy of solvation -69.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds