Wall clock time and date at job start Sun Mar 29 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47298 * 2 1 4 4 C 1.53003 * 109.46716 * 240.00251 * 2 1 3 5 5 C 1.53005 * 109.46696 * 174.99554 * 4 2 1 6 6 N 1.46505 * 109.46904 * 180.02562 * 5 4 2 7 7 C 1.36931 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 N 1.46497 * 109.47081 * 120.00656 * 2 1 3 16 16 C 1.34779 * 119.99707 * 274.99679 * 15 2 1 17 17 O 1.21282 * 120.00272 * 0.02562 * 16 15 2 18 18 C 1.50697 * 120.00169 * 180.02562 * 16 15 2 19 19 H 1.09004 * 115.54937 * 34.32494 * 18 16 15 20 20 C 1.52996 * 117.49572 * 248.62392 * 18 16 15 21 21 C 1.52997 * 117.50394 * 180.02562 * 18 16 15 22 22 H 1.09009 * 117.49446 * 359.97335 * 21 18 16 23 23 C 1.52999 * 117.50190 * 214.97714 * 21 18 16 24 24 H 1.09004 * 109.46989 * 59.99736 * 1 2 3 25 25 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46879 * 299.99593 * 1 2 3 27 27 H 1.09003 * 109.47221 * 55.00507 * 4 2 1 28 28 H 1.08993 * 109.47355 * 295.00118 * 4 2 1 29 29 H 1.09003 * 109.46946 * 60.00823 * 5 4 2 30 30 H 1.08993 * 109.47679 * 300.00366 * 5 4 2 31 31 H 0.97000 * 119.99792 * 0.02562 * 6 5 4 32 32 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 33 33 H 0.97000 * 120.00407 * 95.00383 * 15 2 1 34 34 H 1.08995 * 117.50342 * 359.97438 * 20 18 16 35 35 H 1.09003 * 117.50033 * 145.01615 * 20 18 16 36 36 H 1.08997 * 109.47069 * 59.99907 * 23 21 18 37 37 H 1.08998 * 109.46866 * 179.97438 * 23 21 18 38 38 H 1.08998 * 109.46859 * 299.99893 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0531 -1.3032 -2.5104 7 6 5.3951 -1.3398 -2.7799 8 1 6.0937 -0.8604 -2.1102 9 6 5.8582 -1.9986 -3.9107 10 7 5.0069 -2.5833 -4.7265 11 14 7.6896 -2.0552 -4.2743 12 1 8.3963 -2.7259 -3.1536 13 1 7.9217 -2.8123 -5.5304 14 1 8.2067 -0.6716 -4.4281 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8583 1.1582 2.4118 18 6 2.6500 -0.7287 3.5874 19 1 3.3945 -1.5050 3.4107 20 6 1.6581 -0.9478 4.7315 21 6 2.7734 0.0891 4.8745 22 1 2.4913 1.1411 4.8313 23 6 3.9326 -0.2452 5.8155 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6054 -0.2616 -2.1371 28 1 1.7516 -1.7714 -1.2058 29 1 3.9995 -1.0728 -0.4262 30 1 3.8532 0.4370 -1.3574 31 1 3.4257 -1.7341 -3.1117 32 1 5.3305 -3.0433 -5.5169 33 1 2.2491 -1.6319 1.1525 34 1 0.6421 -0.5778 4.5946 35 1 1.7499 -1.8684 5.3078 36 1 4.8780 -0.1029 5.2922 37 1 3.8962 0.4119 6.6844 38 1 3.8494 -1.2824 6.1402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:16 Heat of formation + Delta-G solvation = -21.163399 kcal Electronic energy + Delta-G solvation = -16958.223136 eV Core-core repulsion = 14222.084164 eV Total energy + Delta-G solvation = -2736.138972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06368 -37.46311 -36.06353 -34.31591 -31.91551 -30.67276 -28.83079 -27.86250 -24.62142 -23.75880 -21.67063 -21.10040 -20.48154 -20.00097 -17.54398 -16.98918 -16.15551 -15.13040 -14.67850 -14.63473 -14.20008 -13.73856 -13.51821 -13.38572 -13.30735 -12.97599 -12.80605 -12.34898 -12.19592 -11.87653 -11.58783 -11.19961 -11.01728 -10.77815 -10.64630 -10.56970 -10.50496 -10.24338 -10.06701 -9.72100 -9.67659 -8.96763 -8.84437 -6.92489 -5.76604 -3.05345 2.54253 3.20305 3.44360 3.48540 3.49787 3.68900 4.53254 4.58214 4.60123 4.65892 4.94578 5.11526 5.12468 5.26444 5.37820 5.45824 5.50446 5.55604 5.56206 5.73069 5.76547 5.78237 5.85242 5.95094 6.05531 6.13104 6.25268 6.29507 6.34934 6.60195 6.82447 6.88152 7.62752 7.69806 8.32940 8.42523 9.53467 10.11256 10.46143 11.46326 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.004631 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.408175 B = 6044.739317 C = 6890.502345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.714 5.714 16 C 0.543 3.457 17 O -0.547 6.547 18 C -0.191 4.191 19 H 0.124 0.876 20 C -0.150 4.150 21 C -0.122 4.122 22 H 0.116 0.884 23 C -0.124 4.124 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.383 0.617 32 H 0.256 0.744 33 H 0.402 0.598 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 1.882 17.733 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.365 5.365 16 C 0.330 3.670 17 O -0.425 6.425 18 C -0.212 4.212 19 H 0.142 0.858 20 C -0.187 4.187 21 C -0.141 4.141 22 H 0.134 0.866 23 C -0.181 4.181 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.237 0.763 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.255 2.749 17.744 19.763 hybrid contribution 0.970 -0.774 -0.649 1.401 sum -7.285 1.975 17.095 18.687 Atomic orbital electron populations 1.22157 0.95511 1.01959 1.02218 1.20984 0.93530 0.97705 0.83833 0.89431 1.22062 0.98044 1.00782 0.96388 1.20634 0.90395 0.95618 0.90715 1.42363 1.05370 1.65043 1.25063 1.19193 0.83838 1.28460 1.05662 0.91306 1.24738 0.97719 1.00824 0.97682 1.69649 1.32876 1.40600 1.15212 0.86258 0.85104 0.77517 0.77267 1.21274 1.21642 1.21239 1.46054 1.66800 1.14194 1.09462 1.19613 0.76993 0.86626 0.83787 1.90669 1.50810 1.15959 1.85096 1.22342 1.04939 1.04690 0.89254 0.85819 1.23071 0.95473 1.01062 0.99140 1.22347 0.98243 0.98189 0.95333 0.86571 1.21405 0.96906 1.01451 0.98362 0.91549 0.92535 0.92519 0.90263 0.91368 0.96375 0.96450 0.78320 0.93463 0.76320 0.88432 0.87904 0.91807 0.91790 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 37.16 0.35 -1.58 16 2 C 0.14 2.02 2.57 -67.93 -0.17 1.84 16 3 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.11 16 6 N -0.73 -18.85 5.60 -59.90 -0.34 -19.18 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 11 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 N -0.71 -9.29 4.53 -53.80 -0.24 -9.54 16 16 C 0.54 7.58 7.58 -10.99 -0.08 7.49 16 17 O -0.55 -9.50 15.92 5.56 0.09 -9.41 16 18 C -0.19 -2.05 5.91 -91.78 -0.54 -2.59 16 19 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 20 C -0.15 -1.33 9.88 -26.76 -0.26 -1.59 16 21 C -0.12 -1.22 5.92 -90.65 -0.54 -1.76 16 22 H 0.12 1.34 7.67 -51.92 -0.40 0.94 16 23 C -0.12 -0.98 10.19 37.16 0.38 -0.60 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.40 4.58 8.60 -40.82 -0.35 4.23 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -32.65 320.79 -7.69 -40.34 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.46 Total: 8.52 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.27 Total: -5.42 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.15 Total: -56.42 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.65 -7.69 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.175 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds