Wall clock time and date at job start Sun Mar 29 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47298 * 2 1 4 4 C 1.53003 * 109.46716 * 240.00251 * 2 1 3 5 5 C 1.53005 * 109.46696 * 174.99554 * 4 2 1 6 6 N 1.46505 * 109.46904 * 180.02562 * 5 4 2 7 7 C 1.36931 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 N 1.46497 * 109.47081 * 120.00656 * 2 1 3 16 16 C 1.34779 * 119.99707 * 274.99679 * 15 2 1 17 17 O 1.21282 * 120.00272 * 0.02562 * 16 15 2 18 18 C 1.50697 * 120.00169 * 180.02562 * 16 15 2 19 19 H 1.09004 * 115.54937 * 34.32494 * 18 16 15 20 20 C 1.52996 * 117.49572 * 248.62392 * 18 16 15 21 21 C 1.52997 * 117.50394 * 180.02562 * 18 16 15 22 22 H 1.09009 * 117.49446 * 359.97335 * 21 18 16 23 23 C 1.52999 * 117.50190 * 214.97714 * 21 18 16 24 24 H 1.09004 * 109.46989 * 59.99736 * 1 2 3 25 25 H 1.09001 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46879 * 299.99593 * 1 2 3 27 27 H 1.09003 * 109.47221 * 55.00507 * 4 2 1 28 28 H 1.08993 * 109.47355 * 295.00118 * 4 2 1 29 29 H 1.09003 * 109.46946 * 60.00823 * 5 4 2 30 30 H 1.08993 * 109.47679 * 300.00366 * 5 4 2 31 31 H 0.97000 * 119.99792 * 0.02562 * 6 5 4 32 32 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 33 33 H 0.97000 * 120.00407 * 95.00383 * 15 2 1 34 34 H 1.08995 * 117.50342 * 359.97438 * 20 18 16 35 35 H 1.09003 * 117.50033 * 145.01615 * 20 18 16 36 36 H 1.08997 * 109.47069 * 59.99907 * 23 21 18 37 37 H 1.08998 * 109.46866 * 179.97438 * 23 21 18 38 38 H 1.08998 * 109.46859 * 299.99893 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0531 -1.3032 -2.5104 7 6 5.3951 -1.3398 -2.7799 8 1 6.0937 -0.8604 -2.1102 9 6 5.8582 -1.9986 -3.9107 10 7 5.0069 -2.5833 -4.7265 11 14 7.6896 -2.0552 -4.2743 12 1 8.3963 -2.7259 -3.1536 13 1 7.9217 -2.8123 -5.5304 14 1 8.2067 -0.6716 -4.4281 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8583 1.1582 2.4118 18 6 2.6500 -0.7287 3.5874 19 1 3.3945 -1.5050 3.4107 20 6 1.6581 -0.9478 4.7315 21 6 2.7734 0.0891 4.8745 22 1 2.4913 1.1411 4.8313 23 6 3.9326 -0.2452 5.8155 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6054 -0.2616 -2.1371 28 1 1.7516 -1.7714 -1.2058 29 1 3.9995 -1.0728 -0.4262 30 1 3.8532 0.4370 -1.3574 31 1 3.4257 -1.7341 -3.1117 32 1 5.3305 -3.0433 -5.5169 33 1 2.2491 -1.6319 1.1525 34 1 0.6421 -0.5778 4.5946 35 1 1.7499 -1.8684 5.3078 36 1 4.8780 -0.1029 5.2922 37 1 3.8962 0.4119 6.6844 38 1 3.8494 -1.2824 6.1402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699123650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:16 Heat of formation + Delta-G solvation = -42.788222 kcal Electronic energy + Delta-G solvation = -16959.160859 eV Core-core repulsion = 14222.084164 eV Total energy + Delta-G solvation = -2737.076695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12909 -38.48599 -37.31427 -36.06638 -33.60841 -32.16651 -29.59249 -29.37378 -26.00964 -25.22024 -23.22952 -22.12789 -21.58539 -20.97546 -19.22909 -18.38878 -17.32371 -16.71483 -16.10459 -15.71277 -15.56372 -15.20653 -14.98485 -14.87914 -14.28312 -14.14245 -13.74953 -13.54654 -13.12374 -12.92468 -12.89018 -12.86702 -12.40047 -12.31533 -12.29373 -12.02316 -11.95216 -11.65952 -11.32127 -11.04138 -10.95770 -10.75820 -10.08212 -9.03022 -7.97315 -5.26754 1.46679 1.49625 1.50968 1.56029 2.18609 2.54615 2.87214 3.36159 3.58119 3.75583 3.80016 3.89725 4.04676 4.14140 4.25022 4.38016 4.43057 4.54043 4.63589 4.74708 4.75544 4.83988 4.87786 4.94602 4.97416 5.07700 5.19753 5.21917 5.24676 5.31267 5.42647 5.46391 5.57602 6.25050 6.57978 7.26385 7.31636 8.06162 8.30895 9.25826 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.004631 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.408175 B = 6044.739317 C = 6890.502345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.065 0.935 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.746 5.746 7 C -0.252 4.252 8 H 0.071 0.929 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.276 1.276 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.709 5.709 16 C 0.538 3.462 17 O -0.589 6.589 18 C -0.202 4.202 19 H 0.141 0.859 20 C -0.130 4.130 21 C -0.130 4.130 22 H 0.093 0.907 23 C -0.120 4.120 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.023 0.977 30 H 0.005 0.995 31 H 0.376 0.624 32 H 0.253 0.747 33 H 0.412 0.588 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 0.949 18.963 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.083 0.917 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.384 4.384 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.202 1.202 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.360 5.360 16 C 0.326 3.674 17 O -0.470 6.470 18 C -0.223 4.223 19 H 0.158 0.842 20 C -0.167 4.167 21 C -0.149 4.149 22 H 0.111 0.889 23 C -0.177 4.177 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.023 0.977 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.248 0.752 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.094 1.812 19.006 20.738 hybrid contribution 0.892 -0.433 -0.998 1.406 sum -7.203 1.379 18.009 19.445 Atomic orbital electron populations 1.22071 0.93566 1.02985 1.02343 1.20828 0.94922 0.96289 0.83477 0.91670 1.21890 0.94569 1.01773 0.97350 1.20753 0.93526 0.94094 0.88869 1.42552 1.04526 1.65376 1.26422 1.19568 0.85252 1.27914 1.05680 0.91137 1.25558 1.02101 1.00975 0.97719 1.69797 1.34724 1.41626 1.15616 0.85217 0.79970 0.77589 0.77024 1.20207 1.21792 1.20620 1.46031 1.66375 1.14588 1.09020 1.20200 0.76218 0.86263 0.84723 1.90648 1.52714 1.17813 1.85789 1.22376 1.06433 1.05302 0.88181 0.84161 1.23175 0.94581 1.01545 0.97404 1.22389 0.99799 0.97344 0.95350 0.88866 1.21401 0.95562 1.02702 0.98017 0.90560 0.91008 0.93279 0.90149 0.90186 0.95866 0.97730 0.79205 0.93827 0.75170 0.89022 0.85088 0.92383 0.90921 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.48 71.98 0.68 -2.76 16 2 C 0.15 4.09 2.57 45.00 0.12 4.21 16 3 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 4 C -0.12 -3.58 4.87 30.60 0.15 -3.43 16 5 C 0.15 6.22 6.15 86.38 0.53 6.75 16 6 N -0.75 -38.27 5.60 -343.44 -1.92 -40.20 16 7 C -0.25 -14.34 9.99 84.04 0.84 -13.51 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 10 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 11 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 N -0.71 -17.78 4.53 -442.52 -2.00 -19.79 16 16 C 0.54 14.78 7.58 87.66 0.66 15.45 16 17 O -0.59 -20.82 15.92 -3.03 -0.05 -20.86 16 18 C -0.20 -4.05 5.91 -11.54 -0.07 -4.12 16 19 H 0.14 2.33 8.14 -2.38 -0.02 2.31 16 20 C -0.13 -2.01 9.88 30.58 0.30 -1.71 16 21 C -0.13 -2.45 5.92 -10.81 -0.06 -2.51 16 22 H 0.09 2.19 7.67 -2.38 -0.02 2.17 16 23 C -0.12 -1.66 10.19 71.98 0.73 -0.93 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.02 0.93 7.75 -2.39 -0.02 0.91 16 30 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.38 20.14 7.67 -92.71 -0.71 19.43 16 32 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 33 H 0.41 8.70 8.60 -92.71 -0.80 7.90 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.13 1.32 8.05 -2.39 -0.02 1.30 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.79 7.90 -2.39 -0.02 0.77 16 Total: -1.00 -69.77 320.79 2.22 -67.55 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.47 Total: 30.01 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.35 Total: -6.19 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.65 Total: -118.71 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -69.77 2.22 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.766 kcal (2) G-P(sol) polarization free energy of solvation -69.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds