Wall clock time and date at job start Sun Mar 29 2020 22:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47517 * 2 1 4 4 O 1.21288 * 119.99694 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00546 * 180.02562 * 3 2 1 6 6 C 1.47428 * 125.64505 * 354.48545 * 5 3 2 7 7 C 1.54907 * 104.83285 * 155.83068 * 6 5 3 8 8 C 1.55163 * 101.58043 * 37.01063 * 7 6 5 9 9 C 1.47478 * 125.59724 * 174.41329 * 5 3 2 10 10 H 1.09002 * 109.96762 * 300.41339 * 9 5 3 11 11 C 1.53010 * 110.03309 * 61.72480 * 9 5 3 12 12 N 1.46497 * 109.47143 * 183.26704 * 11 9 5 13 13 C 1.46494 * 119.99947 * 273.36685 * 12 11 9 14 14 C 1.36941 * 119.99980 * 93.36729 * 12 11 9 15 15 H 1.08004 * 119.99759 * 24.37681 * 14 12 11 16 16 C 1.38805 * 119.99850 * 204.37402 * 14 12 11 17 17 N 1.31619 * 120.00549 * 8.22578 * 16 14 12 18 18 Si 1.86801 * 119.99921 * 188.22441 * 16 14 12 19 19 H 1.48497 * 109.47184 * 89.99993 * 18 16 14 20 20 H 1.48495 * 109.47487 * 210.00358 * 18 16 14 21 21 H 1.48505 * 109.47249 * 330.00262 * 18 16 14 22 22 H 1.08997 * 109.46837 * 59.99739 * 1 2 3 23 23 H 1.08996 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46543 * 300.00182 * 1 2 3 25 25 H 1.09004 * 109.47076 * 239.99267 * 2 1 3 26 26 H 1.09005 * 109.46852 * 119.99976 * 2 1 3 27 27 H 1.09000 * 110.36598 * 36.98913 * 6 5 3 28 28 H 1.09003 * 110.36809 * 274.66918 * 6 5 3 29 29 H 1.09003 * 111.00579 * 278.93430 * 7 6 5 30 30 H 1.09002 * 111.00215 * 155.08272 * 7 6 5 31 31 H 1.08993 * 110.72147 * 82.85841 * 8 7 6 32 32 H 1.08997 * 110.71860 * 205.96029 * 8 7 6 33 33 H 1.08996 * 109.46689 * 303.26828 * 11 9 5 34 34 H 1.08998 * 109.46428 * 63.26471 * 11 9 5 35 35 H 1.09000 * 109.47107 * 95.13605 * 13 12 11 36 36 H 1.09005 * 109.47021 * 215.13453 * 13 12 11 37 37 H 1.08998 * 109.47507 * 335.13510 * 13 12 11 38 38 H 0.96999 * 120.00548 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.4202 0.6516 0.1140 7 6 5.6632 1.3027 -0.5422 8 6 5.5113 2.7816 -0.0980 9 6 3.9833 2.9973 -0.1173 10 1 3.6871 3.4670 -1.0553 11 6 3.5672 3.8778 1.0629 12 7 4.1319 5.2190 0.8945 13 6 5.4834 5.5109 1.3786 14 6 3.3964 6.1999 0.2844 15 1 2.3179 6.1425 0.2802 16 6 4.0370 7.2681 -0.3283 17 7 5.3459 7.2593 -0.4662 18 14 3.0413 8.7181 -0.9573 19 1 2.9125 9.7339 0.1181 20 1 3.7291 9.3205 -2.1274 21 1 1.6907 8.2525 -1.3628 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.8934 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 4.1386 -0.2544 -0.4226 28 1 4.6185 0.4266 1.1620 29 1 5.6230 1.2147 -1.6280 30 1 6.5836 0.8697 -0.1505 31 1 5.9083 2.9251 0.9068 32 1 6.0040 3.4491 -0.8049 33 1 2.4800 3.9435 1.1015 34 1 3.9381 3.4412 1.9902 35 1 6.1952 5.3941 0.5615 36 1 5.5227 6.5346 1.7512 37 1 5.7378 4.8214 2.1835 38 1 5.7935 8.0056 -0.8947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700349142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:43 Heat of formation + Delta-G solvation = -17.177678 kcal Electronic energy + Delta-G solvation = -18185.467492 eV Core-core repulsion = 15449.501354 eV Total energy + Delta-G solvation = -2735.966138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78490 -37.28871 -35.20370 -32.75449 -31.38613 -31.05904 -28.90758 -26.05820 -25.09431 -24.53242 -22.22812 -20.96515 -20.19350 -18.41389 -16.86565 -16.58773 -16.05307 -15.22471 -14.68017 -14.36527 -13.58054 -13.37390 -13.27982 -13.05941 -12.91983 -12.47522 -12.19973 -11.86665 -11.80638 -11.52845 -11.29111 -11.09828 -10.88649 -10.78162 -10.63480 -10.46608 -10.23216 -10.03078 -9.89587 -9.65977 -9.26713 -8.49645 -8.22611 -6.64281 -5.64398 -3.11008 3.01108 3.33939 3.45642 3.50603 3.54456 4.58855 4.68989 4.82150 5.07430 5.10072 5.20755 5.23776 5.46490 5.49665 5.65966 5.72460 5.78079 5.79805 5.85769 5.97382 6.00388 6.17927 6.26165 6.38149 6.45658 6.60178 6.73449 6.81721 6.94395 7.17353 7.45495 7.79701 7.92404 7.96982 8.49933 8.59792 9.34397 9.95832 10.44968 11.40492 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.007383 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.501834 B = 3791.559456 C = 4547.369266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.518 3.482 4 O -0.533 6.533 5 N -0.617 5.617 6 C 0.101 3.899 7 C -0.137 4.137 8 C -0.114 4.114 9 C 0.115 3.885 10 H 0.075 0.925 11 C 0.147 3.853 12 N -0.596 5.596 13 C 0.164 3.836 14 C -0.247 4.247 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.913 5.913 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.041 0.959 37 H -0.007 1.007 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 -16.395 1.125 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.306 3.694 4 O -0.409 6.409 5 N -0.353 5.353 6 C -0.022 4.022 7 C -0.175 4.175 8 C -0.152 4.152 9 C 0.011 3.989 10 H 0.093 0.907 11 C 0.018 3.982 12 N -0.319 5.319 13 C 0.020 3.980 14 C -0.376 4.376 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.559 5.559 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.204 1.204 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.012 0.988 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.763 -15.752 1.067 15.807 hybrid contribution -0.230 0.742 -0.517 0.933 sum -0.993 -15.010 0.550 15.053 Atomic orbital electron populations 1.21521 0.93308 1.01043 1.03481 1.21607 0.98293 0.94422 1.03603 1.20342 0.80846 0.91478 0.76712 1.90733 1.54287 1.46458 1.49451 1.48954 1.04762 1.09103 1.72454 1.22259 0.88068 0.91660 1.00240 1.22811 0.96912 0.97061 1.00678 1.22605 0.95415 0.94687 1.02469 1.22775 0.91774 0.81709 1.02656 0.90664 1.21158 0.98621 0.85331 0.93051 1.43909 1.15179 1.05053 1.67776 1.20854 0.85806 0.97096 0.94251 1.19300 0.90219 1.00183 1.27943 0.91341 1.25056 0.95792 0.99959 0.98851 1.70038 1.06997 1.31390 1.47434 0.86243 0.79448 0.82715 0.78148 1.21555 1.21780 1.20443 0.92012 0.92504 0.91958 0.89507 0.89519 0.91330 0.91739 0.91084 0.90429 0.90982 0.89891 0.92000 0.95097 0.94952 0.94028 0.98836 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.20 37.16 0.34 -1.20 16 2 C -0.14 -1.60 5.34 -27.88 -0.15 -1.75 16 3 C 0.52 8.76 7.68 -10.99 -0.08 8.67 16 4 O -0.53 -11.50 14.80 5.55 0.08 -11.42 16 5 N -0.62 -10.10 3.08 -162.67 -0.50 -10.60 16 6 C 0.10 1.20 6.74 -2.53 -0.02 1.18 16 7 C -0.14 -1.68 7.09 -24.58 -0.17 -1.86 16 8 C -0.11 -1.93 5.23 -24.89 -0.13 -2.06 16 9 C 0.12 2.30 3.18 -66.70 -0.21 2.09 16 10 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 11 C 0.15 3.34 5.20 -4.04 -0.02 3.32 16 12 N -0.60 -15.65 2.86 -181.12 -0.52 -16.17 16 13 C 0.16 4.10 7.52 59.84 0.45 4.55 16 14 C -0.25 -7.16 9.65 -15.06 -0.15 -7.31 16 15 H 0.07 2.03 7.82 -52.48 -0.41 1.62 16 16 C 0.00 0.03 5.19 -17.43 -0.09 -0.06 16 17 N -0.91 -26.92 10.54 55.49 0.58 -26.33 16 18 Si 0.90 22.86 29.56 -169.99 -5.03 17.84 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 25 H 0.09 0.83 7.97 -51.93 -0.41 0.42 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.63 7.47 -51.93 -0.39 0.25 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.23 6.93 -51.93 -0.36 0.87 16 32 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 33 H 0.06 1.55 6.46 -51.93 -0.34 1.22 16 34 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 35 H 0.03 0.84 7.00 -51.93 -0.36 0.48 16 36 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 37 H -0.01 -0.15 7.64 -51.93 -0.40 -0.55 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -32.65 302.07 -7.44 -40.09 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.39 Total: -3.53 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.23 Total: 5.57 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.43 Total: -53.10 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.65 -7.44 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700349142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.912 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds