Wall clock time and date at job start Sun Mar 29 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21286 * 119.99759 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99955 * 180.02562 * 3 2 1 6 6 C 1.46491 * 119.99888 * 359.97438 * 5 3 2 7 7 C 1.53005 * 109.47510 * 270.00269 * 6 5 3 8 8 C 1.46495 * 119.99638 * 179.97438 * 5 3 2 9 9 H 1.08998 * 110.77895 * 181.78078 * 8 5 3 10 10 C 1.55155 * 110.72438 * 305.01865 * 8 5 3 11 11 C 1.54907 * 101.58383 * 153.86514 * 10 8 5 12 12 N 1.47420 * 104.83524 * 322.99460 * 11 10 8 13 13 C 1.36935 * 125.65209 * 204.16221 * 12 11 10 14 14 H 1.08004 * 120.00235 * 179.97438 * 13 12 11 15 15 C 1.38816 * 119.99734 * 359.95746 * 13 12 11 16 16 N 1.31614 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48511 * 109.46970 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47351 * 120.00089 * 17 15 13 20 20 H 1.48496 * 109.47101 * 240.00232 * 17 15 13 21 21 C 1.47026 * 108.70428 * 24.12518 * 12 11 10 22 22 H 1.09002 * 109.46719 * 60.00165 * 1 2 3 23 23 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46964 * 300.00160 * 1 2 3 25 25 H 1.09000 * 109.47046 * 239.99312 * 2 1 3 26 26 H 1.09002 * 109.46719 * 119.99835 * 2 1 3 27 27 H 1.09000 * 109.47200 * 30.00727 * 6 5 3 28 28 H 1.09003 * 109.46889 * 150.00486 * 6 5 3 29 29 H 1.08995 * 109.46930 * 300.00092 * 7 6 5 30 30 H 1.09003 * 109.46867 * 60.00204 * 7 6 5 31 31 H 1.08997 * 109.47213 * 180.02562 * 7 6 5 32 32 H 1.09001 * 111.00015 * 35.79259 * 10 8 5 33 33 H 1.08994 * 111.03653 * 271.95957 * 10 8 5 34 34 H 1.08997 * 110.36783 * 204.15179 * 11 10 8 35 35 H 1.08997 * 110.45914 * 81.87830 * 11 10 8 36 36 H 0.97002 * 119.99964 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.88351 * 118.35702 * 21 12 11 38 38 H 1.08998 * 109.88379 * 239.52492 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.3094 0.5536 -0.0005 7 6 4.6413 0.1662 1.4420 8 6 3.8458 3.0482 -0.0011 9 1 4.9350 3.0733 -0.0331 10 6 3.2432 3.8431 -1.1896 11 6 3.2921 5.2943 -0.6498 12 7 2.9779 5.1740 0.7855 13 6 2.4551 6.1641 1.5738 14 1 2.2594 5.9754 2.6190 15 6 2.1770 7.4105 1.0295 16 7 2.4154 7.6404 -0.2443 17 14 1.4632 8.7610 2.1047 18 1 1.2884 8.2515 3.4886 19 1 2.3869 9.9236 2.1176 20 1 0.1462 9.1812 1.5624 21 6 3.3180 3.8145 1.2302 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8689 -0.3010 -0.5141 28 1 5.2218 0.8556 -0.5147 29 1 5.0818 1.0208 1.9554 30 1 3.7289 -0.1359 1.9562 31 1 5.3499 -0.6620 1.4419 32 1 2.2167 3.5337 -1.3860 33 1 3.8586 3.7375 -2.0829 34 1 2.5460 5.9108 -1.1511 35 1 4.2870 5.7182 -0.7861 36 1 2.2215 8.5114 -0.6245 37 1 4.0899 3.8581 1.9986 38 1 2.4295 3.3195 1.6221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714028627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:45 Heat of formation + Delta-G solvation = -6.976021 kcal Electronic energy + Delta-G solvation = -18334.491656 eV Core-core repulsion = 15598.967895 eV Total energy + Delta-G solvation = -2735.523761 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98362 -36.79508 -35.40416 -32.86901 -31.92100 -30.24127 -28.83720 -27.16839 -24.89786 -23.87021 -22.88895 -20.60337 -20.03311 -18.33326 -16.97889 -16.56835 -15.68497 -15.43631 -14.58847 -14.22380 -13.84681 -13.77585 -13.50122 -13.08181 -12.61401 -12.25044 -12.12772 -11.99450 -11.74132 -11.49489 -11.39086 -11.24375 -10.94518 -10.88319 -10.76057 -10.65061 -10.37660 -9.98447 -9.70747 -9.43859 -8.96026 -8.51936 -8.20508 -6.66009 -5.51156 -2.91166 3.02159 3.27101 3.48424 3.53400 3.56284 4.61448 4.67960 4.87365 5.07538 5.12406 5.20787 5.33787 5.45188 5.54854 5.63473 5.67846 5.71159 5.74033 5.82812 5.89722 5.97722 6.02805 6.15065 6.31071 6.41697 6.64409 6.70667 6.73824 6.87131 7.30998 7.63555 7.77401 7.79249 8.00647 8.51220 8.63412 9.36399 9.97746 10.63314 11.53010 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.006748 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.933743 B = 4148.468980 C = 4427.162863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.502 3.498 4 O -0.508 6.508 5 N -0.609 5.609 6 C 0.106 3.894 7 C -0.172 4.172 8 C 0.134 3.866 9 H 0.085 0.915 10 C -0.157 4.157 11 C 0.158 3.842 12 N -0.596 5.596 13 C -0.212 4.212 14 H 0.075 0.925 15 C -0.015 4.015 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.135 3.865 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.009 0.991 36 H 0.249 0.751 37 H 0.014 0.986 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -17.835 -0.990 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.289 3.711 4 O -0.382 6.382 5 N -0.343 5.343 6 C -0.017 4.017 7 C -0.231 4.231 8 C 0.031 3.969 9 H 0.103 0.897 10 C -0.196 4.196 11 C 0.033 3.967 12 N -0.322 5.322 13 C -0.341 4.341 14 H 0.093 0.907 15 C -0.210 4.210 16 N -0.574 5.574 17 Si 0.744 3.256 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.008 3.992 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.031 0.969 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.155 -17.116 -0.989 17.432 hybrid contribution -0.070 0.581 0.604 0.841 sum 3.085 -16.535 -0.384 16.825 Atomic orbital electron populations 1.21525 0.93333 1.00979 1.03587 1.21697 0.98380 0.94764 1.03466 1.20663 0.82018 0.91522 0.76907 1.90811 1.54649 1.45831 1.46917 1.48064 1.05601 1.06607 1.74052 1.21522 0.93539 0.89591 0.97082 1.22241 1.01792 1.01813 0.97231 1.22163 0.97357 0.79329 0.98038 0.89667 1.23437 1.01535 0.99236 0.95381 1.21829 0.99612 0.90600 0.84699 1.44308 1.74013 1.07316 1.06597 1.19112 1.33192 0.89805 0.91967 0.90678 1.24759 1.02159 0.97655 0.96384 1.69813 1.54672 1.21888 1.10979 0.86003 0.78437 0.81902 0.79229 1.20635 1.21888 1.21825 1.21464 0.96914 0.87394 0.93415 0.91980 0.92586 0.91924 0.89568 0.89502 0.90662 0.90526 0.91968 0.92499 0.91840 0.89922 0.93078 0.87618 0.97347 0.93967 0.96852 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 37.16 0.34 -1.28 16 2 C -0.14 -1.63 4.97 -27.88 -0.14 -1.77 16 3 C 0.50 8.31 6.78 -10.98 -0.07 8.23 16 4 O -0.51 -11.12 12.33 5.55 0.07 -11.05 16 5 N -0.61 -9.27 2.54 -164.03 -0.42 -9.69 16 6 C 0.11 1.08 5.92 -4.04 -0.02 1.06 16 7 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 8 C 0.13 2.53 3.44 -66.10 -0.23 2.30 16 9 H 0.09 1.44 7.87 -51.93 -0.41 1.03 16 10 C -0.16 -3.35 6.40 -24.58 -0.16 -3.50 16 11 C 0.16 4.16 5.89 -2.53 -0.01 4.15 16 12 N -0.60 -16.66 3.39 -170.07 -0.58 -17.24 16 13 C -0.21 -6.38 10.27 -15.06 -0.15 -6.53 16 14 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 15 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 16 N -0.92 -28.51 10.09 55.49 0.56 -27.95 16 17 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 21 C 0.14 3.14 6.49 -3.06 -0.02 3.12 16 22 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.09 0.79 7.40 -51.93 -0.38 0.40 16 26 H 0.09 0.83 7.19 -51.93 -0.37 0.45 16 27 H 0.08 0.60 6.44 -51.93 -0.33 0.26 16 28 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.54 7.22 -51.93 -0.38 0.17 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.94 5.81 -51.93 -0.30 1.63 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.11 3.15 5.87 -51.93 -0.30 2.85 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.87 6.28 -51.93 -0.33 0.55 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -34.62 297.53 -7.23 -41.86 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.14 Total: -2.75 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.18 Total: 4.01 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.43 Total: -54.88 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.62 -7.23 -41.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714028627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.880 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds