Wall clock time and date at job start Sun Mar 29 2020 22:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46831 * 2 1 4 4 O 1.21278 * 120.00182 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99722 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00253 * 4.88546 * 5 3 2 7 7 C 1.52998 * 109.47212 * 266.63311 * 6 5 3 8 8 C 1.46500 * 119.99800 * 184.89170 * 5 3 2 9 9 H 1.08996 * 110.64060 * 56.72183 * 8 5 3 10 10 C 1.55153 * 110.71763 * 293.57911 * 8 5 3 11 11 C 1.54914 * 101.58028 * 277.14001 * 10 8 5 12 12 N 1.47419 * 104.83336 * 322.98820 * 11 10 8 13 13 C 1.36935 * 125.64995 * 204.09176 * 12 11 10 14 14 H 1.08000 * 120.00241 * 180.02562 * 13 12 11 15 15 C 1.38815 * 120.00053 * 0.02810 * 13 12 11 16 16 N 1.31620 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00123 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47366 * 89.99612 * 17 15 13 19 19 H 1.48502 * 109.47050 * 210.00055 * 17 15 13 20 20 H 1.48503 * 109.46861 * 329.99772 * 17 15 13 21 21 C 1.47020 * 108.70165 * 24.13462 * 12 11 10 22 22 H 1.09005 * 109.47120 * 59.99751 * 1 2 3 23 23 H 1.08992 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46796 * 299.99967 * 1 2 3 25 25 H 1.08993 * 109.47181 * 240.00390 * 2 1 3 26 26 H 1.08999 * 109.47350 * 119.99879 * 2 1 3 27 27 H 1.09009 * 109.46785 * 26.62794 * 6 5 3 28 28 H 1.08994 * 109.47455 * 146.62787 * 6 5 3 29 29 H 1.09003 * 109.47217 * 299.99476 * 7 6 5 30 30 H 1.09000 * 109.47496 * 59.99818 * 7 6 5 31 31 H 1.09002 * 109.47085 * 179.97438 * 7 6 5 32 32 H 1.09006 * 111.00382 * 159.06874 * 10 8 5 33 33 H 1.09003 * 111.00597 * 35.21484 * 10 8 5 34 34 H 1.08999 * 110.36646 * 81.83415 * 11 10 8 35 35 H 1.09001 * 110.36293 * 204.14904 * 11 10 8 36 36 H 0.97000 * 120.00101 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.87631 * 239.51955 * 21 12 11 38 38 H 1.08998 * 109.88853 * 118.35491 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3086 0.5582 -0.1091 7 6 4.7271 0.1063 1.2914 8 6 3.8466 3.0439 0.1077 9 1 3.4610 3.5188 1.0098 10 6 3.4614 3.8638 -1.1520 11 6 4.5903 3.4694 -2.1368 12 7 5.7987 3.3563 -1.3001 13 6 7.0890 3.4874 -1.7397 14 1 7.9092 3.3862 -1.0445 15 6 7.3426 3.7505 -3.0789 16 7 6.3430 3.8734 -3.9262 17 14 9.1027 3.9286 -3.6787 18 1 9.6196 2.6012 -4.0981 19 1 9.1401 4.8618 -4.8333 20 1 9.9477 4.4647 -2.5814 21 6 5.3892 3.0785 0.0843 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8385 -0.2735 -0.6340 28 1 5.1880 0.8867 -0.6629 29 1 5.1972 0.9380 1.8162 30 1 3.8477 -0.2223 1.8452 31 1 5.4345 -0.7191 1.2105 32 1 3.4813 4.9334 -0.9430 33 1 2.4865 3.5597 -1.5331 34 1 4.3648 2.5132 -2.6090 35 1 4.7227 4.2443 -2.8919 36 1 6.5202 4.0576 -4.8620 37 1 5.7524 3.8670 0.7435 38 1 5.7865 2.1145 0.4021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714028631.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:46 Heat of formation + Delta-G solvation = -7.220029 kcal Electronic energy + Delta-G solvation = -18409.455812 eV Core-core repulsion = 15673.921469 eV Total energy + Delta-G solvation = -2735.534342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97518 -37.33904 -34.95894 -32.89331 -31.94878 -30.44843 -28.71733 -27.52909 -24.73565 -24.12664 -22.83314 -20.44722 -19.92938 -18.22585 -17.01374 -16.66411 -16.34367 -15.37601 -14.84269 -14.10862 -13.97001 -13.56463 -13.30149 -13.19347 -12.48198 -12.22395 -12.09688 -11.96842 -11.89955 -11.54128 -11.41471 -11.19868 -10.96642 -10.89458 -10.72969 -10.61918 -10.12809 -10.06019 -9.91540 -9.62497 -9.24444 -8.65790 -8.19122 -6.84708 -5.65669 -3.08555 2.96749 3.34938 3.38773 3.43660 3.45874 4.47415 4.72000 5.09360 5.13767 5.16602 5.35691 5.41165 5.48128 5.53531 5.60261 5.68298 5.79965 5.80561 5.91503 5.94868 5.99813 6.05836 6.25251 6.31383 6.38894 6.45748 6.60431 6.74788 6.81830 7.13481 7.55694 7.62217 7.80891 7.88083 8.36153 8.54838 9.20693 9.81395 10.46558 11.37464 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.006608 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.533718 B = 4236.329484 C = 4484.826682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 C 0.509 3.491 4 O -0.546 6.546 5 N -0.593 5.593 6 C 0.095 3.905 7 C -0.168 4.168 8 C 0.135 3.865 9 H 0.073 0.927 10 C -0.152 4.152 11 C 0.156 3.844 12 N -0.602 5.602 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.920 5.920 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.122 3.878 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.009 0.991 35 H 0.104 0.896 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -8.592 8.349 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.298 3.702 4 O -0.424 6.424 5 N -0.326 5.326 6 C -0.028 4.028 7 C -0.227 4.227 8 C 0.032 3.968 9 H 0.091 0.909 10 C -0.192 4.192 11 C 0.031 3.969 12 N -0.329 5.329 13 C -0.353 4.353 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.568 5.568 17 Si 0.744 3.256 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.004 4.004 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.603 -8.046 8.153 13.222 hybrid contribution 1.040 -0.032 -0.325 1.090 sum -5.563 -8.078 7.827 12.549 Atomic orbital electron populations 1.21516 0.93449 1.01058 1.03223 1.21681 0.98143 0.94656 1.03907 1.20642 0.81887 0.91510 0.76204 1.90655 1.55064 1.46576 1.50089 1.47991 1.05402 1.07310 1.71855 1.21683 0.95027 0.88783 0.97351 1.22248 1.01198 1.01699 0.97511 1.21986 0.95011 0.81182 0.98661 0.90922 1.23336 1.00469 0.98716 0.96632 1.21895 0.82188 1.00101 0.92671 1.44538 1.02708 1.83654 1.01973 1.19051 0.82101 1.41454 0.92682 0.90508 1.24795 0.97608 1.02164 0.95965 1.69831 1.28433 1.55528 1.03018 0.86087 0.83745 0.77475 0.78248 1.21669 1.21675 1.20704 1.21727 0.90451 0.98639 0.89551 0.92027 0.92502 0.92214 0.89192 0.89324 0.90940 0.88004 0.91924 0.93015 0.91719 0.91658 0.91230 0.97279 0.87824 0.93732 0.95093 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.20 37.16 0.34 -1.18 16 2 C -0.14 -1.71 5.05 -27.88 -0.14 -1.85 16 3 C 0.51 8.39 7.35 -10.98 -0.08 8.31 16 4 O -0.55 -10.79 14.63 5.56 0.08 -10.71 16 5 N -0.59 -9.90 2.62 -164.03 -0.43 -10.33 16 6 C 0.09 1.37 5.24 -4.04 -0.02 1.34 16 7 C -0.17 -1.97 9.87 37.16 0.37 -1.60 16 8 C 0.13 2.55 3.31 -66.10 -0.22 2.33 16 9 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 10 C -0.15 -3.24 6.47 -24.58 -0.16 -3.39 16 11 C 0.16 3.88 5.87 -2.53 -0.01 3.87 16 12 N -0.60 -15.10 3.26 -170.07 -0.55 -15.66 16 13 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 14 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 17 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C 0.12 2.50 6.03 -3.06 -0.02 2.48 16 22 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.09 0.97 7.25 -51.93 -0.38 0.60 16 26 H 0.09 0.88 7.37 -51.93 -0.38 0.49 16 27 H 0.07 0.90 6.34 -51.92 -0.33 0.57 16 28 H 0.10 1.81 6.11 -51.93 -0.32 1.49 16 29 H 0.06 0.79 7.00 -51.93 -0.36 0.43 16 30 H 0.05 0.54 7.37 -51.93 -0.38 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.51 6.65 -51.93 -0.35 1.16 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 2.92 5.88 -51.93 -0.31 2.62 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.75 4.22 -51.93 -0.22 0.53 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -30.94 295.00 -7.06 -38.00 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.94 Total: 0.03 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.20 Total: 3.67 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.42 Total: -52.22 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.94 -7.06 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714028631.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.778 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds