Wall clock time and date at job start Sun Mar 29 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.21282 * 120.00011 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00369 * 180.02562 * 3 2 1 6 6 C 1.46505 * 120.00115 * 180.02562 * 5 3 2 7 7 H 1.08998 * 110.01326 * 33.60520 * 6 5 3 8 8 C 1.54267 * 110.03012 * 272.16526 * 6 5 3 9 9 C 1.54884 * 104.19590 * 217.10725 * 8 6 5 10 10 C 1.54896 * 102.75081 * 37.94108 * 9 8 6 11 11 C 1.53875 * 110.03130 * 155.00149 * 6 5 3 12 12 H 1.09000 * 110.03020 * 238.57015 * 11 6 5 13 13 C 1.53004 * 110.03181 * 359.94597 * 11 6 5 14 14 N 1.46504 * 109.46961 * 185.00110 * 13 11 6 15 15 C 1.36937 * 119.99955 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00240 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99901 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99796 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99960 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47050 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46902 * 120.00320 * 19 17 15 22 22 H 1.48504 * 109.47346 * 240.00380 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 28 28 H 0.97003 * 119.99640 * 0.02562 * 5 3 2 29 29 H 1.08998 * 110.48464 * 335.78354 * 8 6 5 30 30 H 1.08999 * 110.48153 * 98.42783 * 8 6 5 31 31 H 1.09008 * 110.75376 * 279.63056 * 9 8 6 32 32 H 1.08994 * 110.91730 * 156.33186 * 9 8 6 33 33 H 1.08993 * 110.48499 * 203.38224 * 10 9 8 34 34 H 1.08998 * 110.48365 * 80.73699 * 10 9 8 35 35 H 1.08988 * 109.47513 * 305.00366 * 13 11 6 36 36 H 1.09005 * 109.46784 * 65.00632 * 13 11 6 37 37 H 0.97001 * 119.99895 * 359.97438 * 14 13 11 38 38 H 0.97010 * 119.99476 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1663 3.6840 0.5676 8 6 3.9696 3.5656 -1.4480 9 6 5.2434 4.4465 -1.4291 10 6 6.1893 3.6596 -0.4881 11 6 5.2571 3.1081 0.6103 12 1 5.2627 3.7735 1.4736 13 6 5.7079 1.7065 1.0266 14 7 6.9994 1.7927 1.7130 15 6 7.6042 0.6560 2.1792 16 1 7.1294 -0.3041 2.0405 17 6 8.8281 0.7376 2.8290 18 7 9.4069 1.9076 2.9975 19 14 9.6528 -0.8129 3.4655 20 1 8.8031 -1.9898 3.1523 21 1 10.9778 -0.9719 2.8140 22 1 9.8335 -0.7096 4.9359 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.9878 0.9297 -0.0013 29 1 4.0916 2.7333 -2.1413 30 1 3.0973 4.1618 -1.7159 31 1 5.0247 5.4330 -1.0202 32 1 5.6734 4.5303 -2.4271 33 1 6.9368 4.3246 -0.0557 34 1 6.6697 2.8426 -1.0264 35 1 4.9680 1.2713 1.6981 36 1 5.8084 1.0791 0.1409 37 1 7.4263 2.6549 1.8366 38 1 10.2621 1.9646 3.4520 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715560363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:11 Heat of formation + Delta-G solvation = -44.116179 kcal Electronic energy + Delta-G solvation = -17598.224877 eV Core-core repulsion = 14861.090597 eV Total energy + Delta-G solvation = -2737.134279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03277 -38.02446 -34.38546 -33.52620 -32.66246 -31.42288 -28.58309 -27.64225 -24.68319 -24.04573 -22.48604 -20.59711 -20.20945 -18.99112 -17.41428 -16.97131 -15.79415 -15.54395 -15.16595 -14.60051 -14.30823 -13.82867 -13.63479 -13.21362 -13.03243 -12.88547 -12.46956 -12.09921 -11.80501 -11.59000 -11.29290 -11.20588 -10.89966 -10.83686 -10.79707 -10.48188 -10.38810 -10.28096 -9.95774 -9.74869 -9.66102 -8.95955 -8.80860 -6.96294 -5.80256 -3.09193 2.77068 3.36256 3.40571 3.45970 3.48360 4.52748 4.69782 4.83699 4.85439 5.04132 5.06266 5.14320 5.46799 5.50573 5.52492 5.65843 5.67708 5.74262 5.78622 5.85876 5.88340 5.94244 6.06177 6.13141 6.20313 6.21723 6.32672 6.45050 6.58292 6.63605 6.75645 6.82823 7.65024 7.68056 8.37196 8.38652 9.49880 10.07435 10.42103 11.42573 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.006026 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.571352 B = 4645.323708 C = 5686.630610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.509 3.491 4 O -0.551 6.551 5 N -0.722 5.722 6 C 0.148 3.852 7 H 0.087 0.913 8 C -0.131 4.131 9 C -0.125 4.125 10 C -0.111 4.111 11 C -0.108 4.108 12 H 0.081 0.919 13 C 0.158 3.842 14 N -0.729 5.729 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.407 0.593 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.021 0.979 36 H 0.017 0.983 37 H 0.385 0.615 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 -0.301 -8.651 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C 0.296 3.704 4 O -0.429 6.429 5 N -0.376 5.376 6 C 0.042 3.958 7 H 0.105 0.895 8 C -0.169 4.169 9 C -0.163 4.163 10 C -0.149 4.149 11 C -0.127 4.127 12 H 0.099 0.901 13 C 0.030 3.970 14 N -0.373 5.373 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.245 0.755 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.218 0.782 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.078 0.170 -8.598 15.652 hybrid contribution 1.086 -0.931 0.483 1.509 sum -11.992 -0.761 -8.116 14.500 Atomic orbital electron populations 1.21505 0.93243 1.01304 1.03181 1.21648 0.98462 0.94198 1.04454 1.20783 0.82420 0.91703 0.75517 1.90662 1.55519 1.46606 1.50106 1.46460 1.07103 1.09429 1.74593 1.21630 0.95303 0.82602 0.96232 0.89458 1.22748 0.98100 0.99539 0.96555 1.22491 0.95501 0.98513 0.99781 1.22354 0.97119 0.99659 0.95766 1.22218 0.92663 0.99283 0.98584 0.90060 1.20683 0.89069 0.92706 0.94546 1.42341 1.19308 1.07625 1.68056 1.19254 1.01021 0.87315 1.29661 0.91188 1.24741 0.97863 0.96721 1.01554 1.69673 1.18171 1.22272 1.47898 0.86129 0.79323 0.82406 0.78377 1.20578 1.21849 1.21847 0.92178 0.92055 0.92293 0.88801 0.89062 0.75492 0.91417 0.91617 0.91609 0.91675 0.91222 0.91036 0.96116 0.96519 0.78151 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.15 -1.50 6.42 -27.89 -0.18 -1.68 16 3 C 0.51 7.06 7.83 -10.99 -0.09 6.98 16 4 O -0.55 -9.48 15.64 5.56 0.09 -9.40 16 5 N -0.72 -9.80 4.39 -52.72 -0.23 -10.03 16 6 C 0.15 2.12 3.23 -66.81 -0.22 1.91 16 7 H 0.09 1.36 7.56 -51.93 -0.39 0.96 16 8 C -0.13 -1.68 6.53 -25.07 -0.16 -1.85 16 9 C -0.12 -1.55 6.91 -24.74 -0.17 -1.72 16 10 C -0.11 -1.67 6.09 -25.07 -0.15 -1.83 16 11 C -0.11 -1.73 2.96 -89.50 -0.26 -1.99 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C 0.16 3.00 4.19 -4.04 -0.02 2.98 16 14 N -0.73 -17.91 5.45 -59.91 -0.33 -18.24 16 15 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 24 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.41 5.20 5.90 -40.82 -0.24 4.96 16 29 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 35 H 0.02 0.41 7.42 -51.94 -0.39 0.02 16 36 H 0.02 0.32 7.10 -51.93 -0.37 -0.05 16 37 H 0.38 10.01 7.55 -40.82 -0.31 9.70 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -31.38 307.07 -7.58 -38.96 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.29 Total: 9.54 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.15 Total: -5.40 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.17 Total: -55.38 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.38 -7.58 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715560363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.158 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds