Wall clock time and date at job start Sun Mar 29 2020 22:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47340 * 2 1 4 4 O 1.21280 * 119.99723 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99799 * 180.02562 * 5 3 2 7 7 H 1.09003 * 110.01555 * 326.38338 * 6 5 3 8 8 C 1.54257 * 110.07763 * 87.80420 * 6 5 3 9 9 C 1.54886 * 104.19953 * 142.91545 * 8 6 5 10 10 C 1.54893 * 102.74818 * 322.05884 * 9 8 6 11 11 C 1.53872 * 110.03062 * 204.99638 * 6 5 3 12 12 H 1.09004 * 110.03280 * 121.33351 * 11 6 5 13 13 C 1.53002 * 110.03251 * 359.95109 * 11 6 5 14 14 N 1.46506 * 109.47042 * 175.00289 * 13 11 6 15 15 C 1.36929 * 119.99807 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00341 * 0.27647 * 15 14 13 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99884 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 89.99909 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99659 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99370 * 19 17 15 23 23 H 1.08997 * 109.47036 * 300.00324 * 1 2 3 24 24 H 1.09005 * 109.46991 * 60.00026 * 1 2 3 25 25 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46681 * 239.99977 * 2 1 3 27 27 H 1.08995 * 109.46902 * 120.00162 * 2 1 3 28 28 H 0.96996 * 119.99889 * 359.97438 * 5 3 2 29 29 H 1.09010 * 110.49060 * 261.59571 * 8 6 5 30 30 H 1.08997 * 110.48719 * 24.23785 * 8 6 5 31 31 H 1.09004 * 110.75660 * 80.37488 * 9 8 6 32 32 H 1.08996 * 110.75776 * 203.55778 * 9 8 6 33 33 H 1.08997 * 110.48522 * 279.26034 * 10 9 8 34 34 H 1.08996 * 110.48418 * 156.62001 * 10 9 8 35 35 H 1.08992 * 109.46974 * 54.99786 * 13 11 6 36 36 H 1.09000 * 109.46986 * 294.99851 * 13 11 6 37 37 H 0.96999 * 120.00076 * 359.97438 * 14 13 11 38 38 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8459 3.0482 0.0000 7 1 3.1658 3.6846 -0.5663 8 6 3.9708 3.5651 1.4480 9 6 5.2442 4.4465 1.4283 10 6 6.1895 3.6602 0.4863 11 6 5.2565 3.1087 -0.6115 12 1 5.2609 3.7738 -1.4751 13 6 5.7079 1.7072 -1.0276 14 7 6.9988 1.7940 -1.7151 15 6 7.6039 0.6575 -2.1812 16 1 7.1275 -0.3023 -2.0459 17 6 8.8267 0.7397 -2.8330 18 7 9.4081 -0.3526 -3.2815 19 14 9.6469 2.4006 -3.0737 20 1 10.5269 2.6909 -1.9134 21 1 10.4589 2.3761 -4.3169 22 1 8.6070 3.4551 -3.1825 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9878 0.9297 -0.0005 29 1 3.0985 4.1610 1.7171 30 1 4.0937 2.7328 2.1410 31 1 5.0249 5.4331 1.0200 32 1 5.6718 4.5300 2.4274 33 1 6.6708 2.8432 1.0239 34 1 6.9365 4.3255 0.0533 35 1 4.9676 1.2712 -1.6982 36 1 5.8096 1.0803 -0.1417 37 1 7.4247 2.6564 -1.8401 38 1 10.2628 -0.2952 -3.7367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715560367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:13 Heat of formation + Delta-G solvation = -61.539912 kcal Electronic energy + Delta-G solvation = -17656.250518 eV Core-core repulsion = 14918.360689 eV Total energy + Delta-G solvation = -2737.889829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21372 -39.28668 -36.36805 -34.68157 -33.58297 -33.51499 -30.56835 -28.77050 -26.39614 -25.02813 -23.95407 -21.68743 -21.32861 -20.59388 -19.49941 -18.30849 -17.05402 -16.61908 -16.55949 -16.25063 -15.64490 -15.36860 -15.06740 -14.67188 -14.62591 -14.14659 -13.61931 -13.49453 -13.26800 -12.88188 -12.73569 -12.60326 -12.34122 -12.08117 -12.01675 -11.95750 -11.82309 -11.73101 -11.57625 -11.46848 -10.96835 -10.82921 -10.00935 -9.29293 -8.02284 -5.35530 1.38533 1.41330 1.48566 1.68384 2.29215 2.48876 3.29612 3.35506 3.66237 3.78602 3.86164 3.99624 4.25181 4.28021 4.35467 4.47730 4.49211 4.52190 4.61892 4.75147 4.76398 4.90789 4.98189 5.01031 5.07509 5.08418 5.21067 5.23251 5.31974 5.35048 5.47473 5.60218 5.76548 6.21433 6.57243 7.08394 7.28171 7.84489 8.02994 9.19006 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024983 B = 0.006242 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.510620 B = 4484.785530 C = 5383.946612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 C 0.505 3.495 4 O -0.587 6.587 5 N -0.721 5.721 6 C 0.151 3.849 7 H 0.076 0.924 8 C -0.125 4.125 9 C -0.113 4.113 10 C -0.116 4.116 11 C -0.104 4.104 12 H 0.077 0.923 13 C 0.160 3.840 14 N -0.755 5.755 15 C -0.234 4.234 16 H 0.061 0.939 17 C -0.062 4.062 18 N -0.983 5.983 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.254 1.254 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.411 0.589 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.035 0.965 37 H 0.366 0.634 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 6.378 10.567 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.184 4.184 3 C 0.294 3.706 4 O -0.468 6.468 5 N -0.375 5.375 6 C 0.045 3.955 7 H 0.095 0.905 8 C -0.164 4.164 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.124 4.124 12 H 0.096 0.904 13 C 0.034 3.966 14 N -0.401 5.401 15 C -0.364 4.364 16 H 0.079 0.921 17 C -0.254 4.254 18 N -0.634 5.634 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.178 1.178 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.250 0.750 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.199 0.801 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.730 6.795 10.527 18.588 hybrid contribution 1.166 0.252 -0.647 1.357 sum -12.564 7.046 9.880 17.468 Atomic orbital electron populations 1.21505 0.93075 1.02556 1.01949 1.21729 0.98549 0.91902 1.06228 1.21429 0.81998 0.92859 0.74335 1.90644 1.56272 1.48051 1.51796 1.46468 1.07363 1.09247 1.74401 1.21533 0.93719 0.83117 0.97123 0.90547 1.22705 0.98580 0.99818 0.95288 1.22438 0.94258 0.98338 1.00089 1.22391 0.97340 0.99736 0.95909 1.22177 0.94151 0.96980 0.99055 0.90424 1.20825 0.85962 0.95234 0.94551 1.42689 1.22431 1.05055 1.69907 1.19053 1.01099 0.87716 1.28583 0.92114 1.25470 0.98546 1.00363 1.00989 1.69878 1.18859 1.28885 1.45733 0.85458 0.78742 0.80725 0.77185 1.20185 1.22495 1.17821 0.93064 0.93628 0.89802 0.87539 0.86609 0.74970 0.91390 0.90960 0.90535 0.89915 0.91639 0.91514 0.95630 0.94674 0.80120 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.20 71.98 0.66 -1.76 16 2 C -0.14 -2.64 6.42 29.85 0.19 -2.44 16 3 C 0.51 13.09 7.83 87.66 0.69 13.78 16 4 O -0.59 -19.45 15.64 -3.03 -0.05 -19.50 16 5 N -0.72 -17.82 4.39 -439.12 -1.93 -19.75 16 6 C 0.15 3.86 3.22 45.71 0.15 4.00 16 7 H 0.08 2.17 7.56 -2.39 -0.02 2.15 16 8 C -0.13 -2.74 6.53 31.66 0.21 -2.54 16 9 C -0.11 -2.24 6.91 31.89 0.22 -2.02 16 10 C -0.12 -2.90 6.08 31.67 0.19 -2.71 16 11 C -0.10 -2.91 2.96 -10.07 -0.03 -2.94 16 12 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 13 C 0.16 5.58 4.19 86.38 0.36 5.95 16 14 N -0.76 -33.73 5.25 -343.45 -1.80 -35.53 16 15 C -0.23 -12.92 10.47 84.04 0.88 -12.04 16 16 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 17 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 18 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 19 Si 0.95 44.62 27.74 68.60 1.90 46.52 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 23 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 24 H 0.04 0.96 8.10 -2.38 -0.02 0.94 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.41 9.51 5.90 -92.71 -0.55 8.96 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.77 7.76 -2.39 -0.02 1.75 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 0.93 7.42 -2.39 -0.02 0.91 16 36 H 0.04 1.19 7.11 -2.39 -0.02 1.17 16 37 H 0.37 15.72 5.41 -92.71 -0.50 15.22 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -69.26 303.94 2.35 -66.91 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.07 Total: 28.98 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 3.99 Total: -5.86 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.43 Total: -117.06 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -69.26 2.35 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715560367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.373 kcal (2) G-P(sol) polarization free energy of solvation -69.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds