Wall clock time and date at job start Sun Mar 29 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 115.54696 * 2 1 4 4 C 1.52999 * 117.50086 * 145.71112 * 2 1 3 5 5 C 1.52998 * 60.00103 * 107.48772 * 4 2 1 6 6 H 1.09006 * 117.51219 * 107.48312 * 5 4 2 7 7 C 1.50693 * 117.50332 * 252.50882 * 5 4 2 8 8 O 1.21279 * 120.00139 * 68.62346 * 7 5 4 9 9 N 1.34775 * 120.00111 * 248.62636 * 7 5 4 10 10 C 1.46505 * 120.00121 * 359.97438 * 9 7 5 11 11 C 1.46500 * 120.00033 * 180.02562 * 9 7 5 12 12 C 1.53001 * 109.46957 * 269.99739 * 11 9 7 13 13 N 1.46503 * 109.47330 * 180.02562 * 12 11 9 14 14 C 1.46501 * 119.99792 * 89.99793 * 13 12 11 15 15 C 1.36933 * 119.99677 * 269.99808 * 13 12 11 16 16 H 1.08007 * 119.99413 * 142.02636 * 15 13 12 17 17 C 1.38804 * 120.00341 * 322.02258 * 15 13 12 18 18 N 1.31627 * 119.99917 * 157.08815 * 17 15 13 19 19 Si 1.86797 * 120.00102 * 337.09380 * 17 15 13 20 20 H 1.48507 * 109.47040 * 95.68488 * 19 17 15 21 21 H 1.48500 * 109.47148 * 215.68136 * 19 17 15 22 22 H 1.48498 * 109.47231 * 335.68669 * 19 17 15 23 23 H 1.08994 * 109.46810 * 205.66467 * 1 2 3 24 24 H 1.08998 * 109.47059 * 325.66926 * 1 2 3 25 25 H 1.09003 * 109.46554 * 85.67054 * 1 2 3 26 26 H 1.09006 * 117.49683 * 0.02562 * 4 2 1 27 27 H 1.08997 * 117.50089 * 214.98231 * 4 2 1 28 28 H 1.08997 * 109.46993 * 270.00381 * 10 9 7 29 29 H 1.09006 * 109.46547 * 30.00650 * 10 9 7 30 30 H 1.09000 * 109.47136 * 150.00123 * 10 9 7 31 31 H 1.09003 * 109.47413 * 150.00217 * 11 9 7 32 32 H 1.08996 * 109.47126 * 29.99505 * 11 9 7 33 33 H 1.08999 * 109.47206 * 59.99527 * 12 11 9 34 34 H 1.09009 * 109.47226 * 299.99735 * 12 11 9 35 35 H 1.09001 * 109.47112 * 85.68251 * 14 13 12 36 36 H 1.08998 * 109.47281 * 325.68048 * 14 13 12 37 37 H 1.08995 * 109.46788 * 205.68365 * 14 13 12 38 38 H 0.96996 * 119.99831 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1213 0.7645 5 6 2.2365 -1.1207 -0.7654 6 1 3.1714 -0.8746 -1.2689 7 6 1.3721 -2.1400 -1.4617 8 8 0.1640 -2.0528 -1.4021 9 7 1.9417 -3.1487 -2.1506 10 6 3.4012 -3.2539 -2.2230 11 6 1.1014 -4.1394 -2.8279 12 6 0.8083 -5.2980 -1.8726 13 7 -0.0316 -6.2890 -2.5501 14 6 0.5882 -7.3853 -3.2986 15 6 -1.3957 -6.1905 -2.4836 16 1 -1.9974 -6.4336 -3.3470 17 6 -2.0053 -5.7784 -1.3066 18 7 -3.2121 -5.2538 -1.3392 19 14 -1.1130 -5.9681 0.3235 20 1 -0.4298 -4.6945 0.6649 21 1 -2.0924 -6.3051 1.3876 22 1 -0.1074 -7.0552 0.2138 23 1 -0.3633 -0.9262 0.4451 24 1 -0.3633 0.8486 0.5796 25 1 -0.3632 0.0776 -1.0248 26 1 1.6113 -1.8592 1.2672 27 1 3.1716 -0.8756 1.2680 28 1 3.7627 -2.7006 -3.0896 29 1 3.8408 -2.8376 -1.3166 30 1 3.6857 -4.3020 -2.3165 31 1 1.6222 -4.5169 -3.7078 32 1 0.1642 -3.6735 -3.1323 33 1 0.2875 -4.9206 -0.9926 34 1 1.7455 -5.7639 -1.5681 35 1 0.8115 -8.2082 -2.6196 36 1 1.5112 -7.0342 -3.7599 37 1 -0.0971 -7.7292 -4.0733 38 1 -3.6379 -4.9655 -0.5167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715751245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:48 Heat of formation + Delta-G solvation = 22.366764 kcal Electronic energy + Delta-G solvation = -18231.416013 eV Core-core repulsion = 15497.164650 eV Total energy + Delta-G solvation = -2734.251362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93740 -37.02896 -35.76971 -34.78367 -31.55287 -29.48323 -28.26742 -26.40531 -26.06910 -24.48394 -22.31920 -20.96155 -20.53521 -18.42690 -17.07822 -16.70703 -15.71285 -15.19909 -15.08338 -14.63934 -13.83455 -13.47724 -13.16496 -12.95426 -12.74496 -12.64028 -12.42299 -12.28318 -12.27195 -11.83901 -11.65712 -11.49226 -11.37519 -10.94616 -10.55376 -10.41243 -10.14423 -9.93973 -9.72509 -9.48714 -9.10098 -8.48458 -8.26463 -6.74143 -5.91217 -3.33205 2.84824 3.30865 3.43161 3.51886 3.57504 3.92227 4.62241 4.63689 4.76591 4.90490 5.13056 5.15878 5.28572 5.42916 5.48356 5.49257 5.62518 5.72313 5.77726 5.87834 6.00584 6.14108 6.15359 6.19293 6.28067 6.29941 6.56862 6.69093 6.72254 6.74765 6.85985 7.05489 7.78806 8.13175 8.45270 8.64831 9.05060 9.79690 10.18376 11.24230 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.009194 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.521614 B = 3044.867095 C = 3708.206101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.155 4.155 5 C -0.191 4.191 6 H 0.119 0.881 7 C 0.531 3.469 8 O -0.514 6.514 9 N -0.616 5.616 10 C 0.082 3.918 11 C 0.099 3.901 12 C 0.128 3.872 13 N -0.609 5.609 14 C 0.125 3.875 15 C -0.279 4.279 16 H 0.078 0.922 17 C 0.046 3.954 18 N -0.892 5.892 19 Si 0.877 3.123 20 H -0.283 1.283 21 H -0.302 1.302 22 H -0.273 1.273 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.006 0.994 36 H 0.025 0.975 37 H 0.046 0.954 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.587 7.726 1.169 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.138 4.138 3 H 0.126 0.874 4 C -0.193 4.193 5 C -0.212 4.212 6 H 0.137 0.863 7 C 0.318 3.682 8 O -0.388 6.388 9 N -0.351 5.351 10 C -0.062 4.062 11 C -0.025 4.025 12 C 0.001 3.999 13 N -0.334 5.334 14 C -0.020 4.020 15 C -0.408 4.408 16 H 0.096 0.904 17 C -0.156 4.156 18 N -0.532 5.532 19 Si 0.707 3.293 20 H -0.211 1.211 21 H -0.230 1.230 22 H -0.198 1.198 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.760 7.782 1.253 16.732 hybrid contribution 0.726 -0.147 0.895 1.162 sum 15.486 7.635 2.148 17.399 Atomic orbital electron populations 1.21383 0.91300 1.01546 1.02843 1.22353 0.96781 0.93175 1.01446 0.87426 1.23075 1.02892 1.02202 0.91117 1.22331 1.01916 1.01376 0.95602 0.86304 1.19682 0.88188 0.81279 0.79053 1.90803 1.14194 1.74092 1.59748 1.47945 1.06713 1.27550 1.52873 1.21722 0.80649 1.02453 1.01399 1.22325 0.95224 0.89492 0.95463 1.21467 0.93647 0.89375 0.95425 1.43978 1.03272 1.24632 1.61486 1.21086 0.95767 0.90210 0.94924 1.18728 0.80133 1.45108 0.96797 0.90402 1.25418 0.95039 0.97495 0.97669 1.69869 1.15653 1.39965 1.27716 0.86905 0.79150 0.78029 0.85191 1.21120 1.22967 1.19816 0.91483 0.93516 0.91169 0.88269 0.88111 0.93111 0.91370 0.91215 0.91734 0.89088 0.92288 0.94789 0.97602 0.95645 0.93539 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 8.43 37.16 0.31 -1.46 16 2 C -0.12 -1.54 6.41 -90.62 -0.58 -2.12 16 3 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.16 -1.93 9.88 -26.73 -0.26 -2.20 16 5 C -0.19 -2.59 4.80 -91.78 -0.44 -3.03 16 6 H 0.12 1.25 7.26 -51.93 -0.38 0.87 16 7 C 0.53 9.83 7.44 -10.99 -0.08 9.75 16 8 O -0.51 -11.97 12.68 5.56 0.07 -11.90 16 9 N -0.62 -10.54 2.87 -181.57 -0.52 -11.06 16 10 C 0.08 0.94 10.01 59.85 0.60 1.54 16 11 C 0.10 2.00 5.73 -4.04 -0.02 1.97 16 12 C 0.13 2.93 4.86 -4.04 -0.02 2.91 16 13 N -0.61 -15.22 2.47 -181.12 -0.45 -15.66 16 14 C 0.13 2.56 10.70 59.85 0.64 3.20 16 15 C -0.28 -8.21 9.88 -15.06 -0.15 -8.36 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 17 C 0.05 1.39 5.29 -17.43 -0.09 1.30 16 18 N -0.89 -28.70 13.97 55.49 0.78 -27.92 16 19 Si 0.88 23.90 25.10 -169.99 -4.27 19.63 16 20 H -0.28 -7.76 6.68 56.52 0.38 -7.38 16 21 H -0.30 -8.22 7.11 56.52 0.40 -7.81 16 22 H -0.27 -7.25 7.11 56.52 0.40 -6.85 16 23 H 0.07 1.24 7.01 -51.93 -0.36 0.88 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.21 7.26 -51.93 -0.38 0.84 16 26 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.67 6.64 -51.93 -0.34 0.32 16 30 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 32 H 0.09 2.20 7.42 -51.93 -0.39 1.81 16 33 H 0.06 1.56 3.38 -51.93 -0.18 1.38 16 34 H 0.03 0.70 8.07 -51.92 -0.42 0.28 16 35 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 36 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.05 0.93 8.00 -51.93 -0.42 0.51 16 38 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -34.87 305.83 -6.11 -40.98 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.23 Total: -2.17 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.10 Total: 3.50 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.19 Total: -54.65 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.27 Total: 19.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.87 -6.11 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715751245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.347 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds