Wall clock time and date at job start Sun Mar 29 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 115.55909 * 2 1 4 4 C 1.52996 * 117.50106 * 214.30779 * 2 1 3 5 5 C 1.53001 * 117.49808 * 145.68251 * 2 1 3 6 6 H 1.08994 * 117.49919 * 215.00606 * 5 2 1 7 7 C 1.50697 * 117.49726 * 0.02562 * 5 2 1 8 8 O 1.21279 * 120.00308 * 359.97438 * 7 5 2 9 9 N 1.34781 * 119.99830 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99938 * 0.02562 * 9 7 5 11 11 C 1.46499 * 120.00114 * 179.97438 * 9 7 5 12 12 C 1.53001 * 109.47382 * 270.00372 * 11 9 7 13 13 N 1.46499 * 109.47165 * 179.97438 * 12 11 9 14 14 C 1.46496 * 120.00418 * 270.00189 * 13 12 11 15 15 C 1.36941 * 119.99621 * 89.99908 * 13 12 11 16 16 H 1.08004 * 119.99970 * 22.35069 * 15 13 12 17 17 C 1.38808 * 120.00012 * 202.34514 * 15 13 12 18 18 N 1.31624 * 120.00013 * 11.34374 * 17 15 13 19 19 Si 1.86800 * 120.00070 * 191.35084 * 17 15 13 20 20 H 1.48495 * 109.47256 * 59.99930 * 19 17 15 21 21 H 1.48504 * 109.47055 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46967 * 299.99642 * 19 17 15 23 23 H 1.08994 * 109.47163 * 274.31465 * 1 2 3 24 24 H 1.09001 * 109.46894 * 34.31094 * 1 2 3 25 25 H 1.09001 * 109.46609 * 154.31445 * 1 2 3 26 26 H 1.09004 * 117.50109 * 145.02394 * 4 2 1 27 27 H 1.09000 * 117.49648 * 359.97438 * 4 2 1 28 28 H 1.09005 * 109.46837 * 269.99486 * 10 9 7 29 29 H 1.08993 * 109.47320 * 29.99276 * 10 9 7 30 30 H 1.08998 * 109.47278 * 149.99967 * 10 9 7 31 31 H 1.08997 * 109.47143 * 30.00487 * 11 9 7 32 32 H 1.08997 * 109.47015 * 150.00191 * 11 9 7 33 33 H 1.08997 * 109.47076 * 300.00157 * 12 11 9 34 34 H 1.09001 * 109.46937 * 59.99491 * 12 11 9 35 35 H 1.08999 * 109.46929 * 94.20661 * 14 13 12 36 36 H 1.08993 * 109.47248 * 214.21503 * 14 13 12 37 37 H 1.09010 * 109.46795 * 334.21244 * 14 13 12 38 38 H 0.96998 * 119.99903 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1713 -0.8750 1.2687 7 6 1.3720 -2.1408 1.4606 8 8 0.1638 -2.0534 1.4010 9 7 1.9416 -3.1500 2.1488 10 6 3.4010 -3.2552 2.2213 11 6 1.1012 -4.1411 2.8253 12 6 0.8091 -3.6732 4.2525 13 7 -0.0317 -4.6641 4.9287 14 6 -1.4911 -4.5579 4.8570 15 6 0.5465 -5.6898 5.6280 16 1 1.5589 -5.5922 5.9915 17 6 -0.1684 -6.8547 5.8697 18 7 -1.3076 -7.0692 5.2461 19 14 0.4859 -8.1180 7.0802 20 1 0.6207 -7.4950 8.4214 21 1 -0.4569 -9.2627 7.1592 22 1 1.8138 -8.6005 6.6227 23 1 -0.3633 0.0773 1.0247 24 1 -0.3633 0.8489 -0.5793 25 1 -0.3632 -0.9262 -0.4454 26 1 3.1717 -0.8752 -1.2682 27 1 1.6113 -1.8587 -1.2678 28 1 3.7634 -3.8602 1.3901 29 1 3.8403 -2.2593 2.1644 30 1 3.6852 -3.7244 3.1631 31 1 0.1637 -4.2547 2.2812 32 1 1.6217 -5.0983 2.8561 33 1 1.7467 -3.5597 4.7966 34 1 0.2887 -2.7160 4.2216 35 1 -1.8600 -5.1711 4.0348 36 1 -1.9271 -4.9052 5.7935 37 1 -1.7718 -3.5180 4.6890 38 1 -1.8070 -7.8834 5.4148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715751246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:49 Heat of formation + Delta-G solvation = 17.624724 kcal Electronic energy + Delta-G solvation = -17675.392623 eV Core-core repulsion = 14940.935630 eV Total energy + Delta-G solvation = -2734.456993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00905 -37.00598 -35.67470 -34.78768 -31.45384 -29.03165 -28.22439 -26.36438 -25.77352 -24.57602 -22.43997 -20.99689 -20.30553 -18.45318 -17.19185 -16.65139 -15.62140 -15.37884 -14.87725 -14.46022 -13.73663 -13.59050 -13.13008 -13.02585 -12.66994 -12.51246 -12.47602 -12.29528 -11.99414 -11.79338 -11.49033 -11.25603 -10.83419 -10.79859 -10.48839 -10.25299 -10.10273 -10.02249 -9.90443 -9.74952 -9.20800 -8.57870 -8.29280 -6.70985 -5.69358 -3.15799 2.75441 3.30452 3.39616 3.45200 3.46247 3.81623 4.51959 4.56667 4.68412 4.81570 5.01222 5.32367 5.32941 5.44864 5.53014 5.58494 5.72377 5.74954 5.85663 5.86955 5.93447 6.01913 6.16096 6.30461 6.42947 6.58437 6.63602 6.80593 6.89208 7.10312 7.46387 7.77214 7.78399 7.85594 8.42476 8.55149 9.26786 9.90175 10.40257 11.35384 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043977 B = 0.005195 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.540395 B = 5388.816952 C = 5789.174612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.191 4.191 6 H 0.121 0.879 7 C 0.535 3.465 8 O -0.534 6.534 9 N -0.609 5.609 10 C 0.080 3.920 11 C 0.093 3.907 12 C 0.145 3.855 13 N -0.599 5.599 14 C 0.165 3.835 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.907 5.907 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.028 0.972 36 H 0.044 0.956 37 H -0.002 1.002 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.226 11.453 -9.655 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 H 0.125 0.875 4 C -0.190 4.190 5 C -0.213 4.213 6 H 0.139 0.861 7 C 0.323 3.677 8 O -0.412 6.412 9 N -0.342 5.342 10 C -0.063 4.063 11 C -0.031 4.031 12 C 0.017 3.983 13 N -0.322 5.322 14 C 0.020 3.980 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.552 5.552 19 Si 0.736 3.264 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.210 1.210 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.428 11.315 -9.627 17.080 hybrid contribution 0.620 -0.957 0.659 1.317 sum 9.048 10.357 -8.969 16.419 Atomic orbital electron populations 1.21356 0.91459 1.01240 1.02750 1.22351 0.96685 0.93335 1.01622 0.87450 1.23042 1.02834 1.02026 0.91142 1.22368 1.02057 1.01265 0.95569 0.86140 1.19607 0.87989 0.81431 0.78685 1.90700 1.14471 1.74335 1.61643 1.48055 1.07015 1.27710 1.51457 1.21767 0.80421 1.01803 1.02357 1.22598 0.94681 0.90311 0.95484 1.21085 0.94704 0.92342 0.90210 1.43941 1.01711 1.28947 1.57617 1.20803 0.82630 0.93681 1.00868 1.19178 0.99306 0.93061 1.27136 0.91484 1.25047 0.97764 0.97056 0.99763 1.70074 1.15853 1.26314 1.42967 0.86323 0.77921 0.80935 0.81246 1.21083 1.21618 1.20983 0.91223 0.93605 0.91703 0.88171 0.88368 0.92994 0.91541 0.90823 0.90574 0.90690 0.94117 0.94260 0.95355 0.93704 0.98345 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.43 37.16 0.31 -1.11 16 2 C -0.12 -1.33 6.41 -90.62 -0.58 -1.91 16 3 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 4 C -0.15 -1.55 9.88 -26.73 -0.26 -1.82 16 5 C -0.19 -2.28 5.29 -91.77 -0.49 -2.76 16 6 H 0.12 1.16 6.44 -51.93 -0.33 0.82 16 7 C 0.54 8.77 7.44 -10.98 -0.08 8.69 16 8 O -0.53 -10.65 12.68 5.56 0.07 -10.58 16 9 N -0.61 -9.85 2.87 -181.57 -0.52 -10.38 16 10 C 0.08 0.94 10.27 59.85 0.61 1.55 16 11 C 0.09 1.88 5.73 -4.04 -0.02 1.86 16 12 C 0.15 3.19 6.03 -4.04 -0.02 3.17 16 13 N -0.60 -15.76 2.93 -181.12 -0.53 -16.29 16 14 C 0.16 4.35 9.01 59.84 0.54 4.89 16 15 C -0.26 -7.16 9.67 -15.06 -0.15 -7.30 16 16 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 17 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 18 N -0.91 -26.91 10.59 55.49 0.59 -26.32 16 19 Si 0.91 21.94 29.57 -169.99 -5.03 16.91 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.95 7.01 -51.93 -0.36 0.58 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.61 6.00 -51.93 -0.31 0.30 16 30 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.08 1.74 7.42 -51.93 -0.39 1.36 16 32 H 0.07 1.56 8.07 -51.93 -0.42 1.14 16 33 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.04 0.87 7.86 -51.93 -0.41 0.46 16 35 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 36 H 0.04 1.24 7.19 -51.93 -0.37 0.87 16 37 H 0.00 -0.05 7.84 -51.92 -0.41 -0.46 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -31.85 308.63 -7.25 -39.10 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.26 Total: -2.32 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.23 Total: 5.22 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.46 Total: -52.98 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.85 -7.25 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715751246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.729 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds