Wall clock time and date at job start Sun Mar 29 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47281 * 2 1 4 4 C 1.52997 * 109.47377 * 240.00476 * 2 1 3 5 5 N 1.46504 * 109.47399 * 185.00289 * 4 2 1 6 6 C 1.46498 * 120.00183 * 89.99429 * 5 4 2 7 7 C 1.36939 * 119.99483 * 270.00001 * 5 4 2 8 8 H 1.07999 * 120.00495 * 22.06587 * 7 5 4 9 9 C 1.38817 * 119.99573 * 202.07548 * 7 5 4 10 10 N 1.31619 * 119.99855 * 13.94766 * 9 7 5 11 11 Si 1.86796 * 119.99669 * 193.94896 * 9 7 5 12 12 H 1.48495 * 109.47416 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46886 * 119.99840 * 11 9 7 14 14 H 1.48504 * 109.46963 * 239.99428 * 11 9 7 15 15 N 1.46501 * 109.47185 * 119.99878 * 2 1 3 16 16 C 1.34769 * 120.00005 * 275.00173 * 15 2 1 17 17 O 1.21277 * 120.00372 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99783 * 179.72124 * 16 15 2 19 19 H 1.08996 * 115.55180 * 34.60664 * 18 16 15 20 20 C 1.53001 * 117.50013 * 248.89680 * 18 16 15 21 21 C 1.53000 * 60.00031 * 252.50943 * 20 18 16 22 22 H 1.08998 * 117.51525 * 107.48417 * 21 20 18 23 23 C 1.52993 * 117.50110 * 252.50829 * 21 20 18 24 24 H 1.09007 * 109.47002 * 59.99742 * 1 2 3 25 25 H 1.08991 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47130 * 300.00275 * 1 2 3 27 27 H 1.09010 * 109.46948 * 304.99933 * 4 2 1 28 28 H 1.08999 * 109.47373 * 64.99373 * 4 2 1 29 29 H 1.08994 * 109.46977 * 95.30347 * 6 5 4 30 30 H 1.09001 * 109.47004 * 215.30691 * 6 5 4 31 31 H 1.09003 * 109.46828 * 335.30740 * 6 5 4 32 32 H 0.97000 * 119.99553 * 180.02562 * 10 9 7 33 33 H 0.96998 * 119.99292 * 94.99832 * 15 2 1 34 34 H 1.08998 * 117.49718 * 0.02562 * 20 18 16 35 35 H 1.09008 * 117.49719 * 145.02008 * 20 18 16 36 36 H 1.08998 * 109.47540 * 128.62284 * 23 21 20 37 37 H 1.09009 * 109.47398 * 248.62434 * 23 21 20 38 38 H 1.09008 * 109.47076 * 8.62380 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5002 -0.8263 -1.1906 6 6 4.1259 -1.9919 -0.5612 7 6 4.2799 0.1650 -1.7239 8 1 3.8746 1.1567 -1.8600 9 6 5.5915 -0.1049 -2.0899 10 7 6.0046 -1.3509 -2.1864 11 14 6.7699 1.3001 -2.4455 12 1 6.0649 2.5948 -2.2667 13 1 7.9204 1.2302 -1.5091 14 1 7.2615 1.1923 -3.8426 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8582 1.1583 2.4117 18 6 2.6434 -0.7302 3.5891 19 1 3.3884 -1.5066 3.4153 20 6 1.6459 -0.9499 4.7282 21 6 2.7616 0.0864 4.8775 22 1 2.4806 1.1386 4.8341 23 6 3.9160 -0.2498 5.8236 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7198 -1.2952 28 1 1.7517 -0.1582 -2.1370 29 1 4.3682 -2.7308 -1.3249 30 1 5.0387 -1.6833 -0.0516 31 1 3.4363 -2.4287 0.1612 32 1 6.9212 -1.5394 -2.4418 33 1 2.2490 -1.6317 1.1525 34 1 0.6306 -0.5799 4.5864 35 1 1.7344 -1.8713 5.3040 36 1 4.8641 -0.1079 5.3048 37 1 3.8760 0.4063 6.6932 38 1 3.8305 -1.2872 6.1470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716034419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:20 Heat of formation + Delta-G solvation = 1.668147 kcal Electronic energy + Delta-G solvation = -17827.426327 eV Core-core repulsion = 15092.277405 eV Total energy + Delta-G solvation = -2735.148922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68673 -37.21086 -35.93710 -34.01390 -31.31217 -30.30051 -28.61472 -26.19708 -25.63002 -24.12472 -21.74196 -20.82476 -20.10569 -19.57860 -17.11755 -16.79292 -15.54980 -15.02056 -14.73174 -14.27348 -13.94047 -13.52428 -13.34733 -13.16193 -12.91731 -12.68414 -12.09356 -12.03570 -11.93399 -11.51037 -11.35623 -11.30464 -10.83926 -10.62935 -10.62513 -10.29162 -10.17525 -10.00837 -9.96747 -9.86132 -9.33441 -8.63123 -8.41664 -6.74829 -5.72658 -3.18097 2.90368 3.38947 3.46702 3.49923 3.62285 3.94398 4.51232 4.78796 4.83362 4.92144 5.29793 5.31434 5.40672 5.47325 5.60669 5.67860 5.68749 5.74121 5.82226 5.96032 5.98188 6.03885 6.10115 6.20595 6.33801 6.46263 6.55058 6.61543 6.81615 7.12862 7.31297 7.67341 7.81851 8.06881 8.38416 8.75354 9.23102 9.85978 10.33532 11.32136 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.007056 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.823738 B = 3967.120341 C = 4594.128771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.167 3.833 7 C -0.251 4.251 8 H 0.068 0.932 9 C 0.001 3.999 10 N -0.909 5.909 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.699 5.699 16 C 0.542 3.458 17 O -0.554 6.554 18 C -0.187 4.187 19 H 0.121 0.879 20 C -0.152 4.152 21 C -0.124 4.124 22 H 0.115 0.885 23 C -0.123 4.123 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.040 0.960 31 H -0.007 1.007 32 H 0.251 0.749 33 H 0.397 0.603 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 -2.409 11.336 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.101 0.899 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.023 3.977 7 C -0.380 4.380 8 H 0.086 0.914 9 C -0.197 4.197 10 N -0.554 5.554 11 Si 0.733 3.267 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.217 1.217 15 N -0.349 5.349 16 C 0.328 3.672 17 O -0.433 6.433 18 C -0.208 4.208 19 H 0.139 0.861 20 C -0.190 4.190 21 C -0.142 4.142 22 H 0.133 0.867 23 C -0.180 4.180 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.011 0.989 32 H 0.061 0.939 33 H 0.233 0.767 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.159 -1.652 11.281 14.020 hybrid contribution 0.948 0.181 -0.334 1.021 sum -7.211 -1.471 10.947 13.191 Atomic orbital electron populations 1.22120 0.96609 1.01233 1.01694 1.21912 0.92085 0.98920 0.86250 0.89888 1.21056 0.85865 0.97519 0.94112 1.43824 0.99090 1.22785 1.66349 1.20815 0.94065 0.89083 0.93784 1.19218 0.93823 0.89869 1.35129 0.91422 1.24970 0.98716 0.96088 0.99889 1.70073 1.16582 1.16688 1.52095 0.86209 0.81195 0.81919 0.77422 1.20284 1.21672 1.21740 1.45956 1.65913 1.13861 1.09192 1.19520 0.77186 0.86626 0.83888 1.90635 1.51366 1.16011 1.85295 1.22345 1.04526 1.04466 0.89473 0.86084 1.23054 0.95387 1.00910 0.99615 1.22320 0.98150 0.98150 0.95624 0.86673 1.21394 0.97110 1.01245 0.98255 0.91976 0.93061 0.93007 0.94137 0.91919 0.95054 0.94088 0.98912 0.93865 0.76716 0.88575 0.88129 0.91823 0.91948 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.11 2.88 -67.93 -0.20 1.92 16 3 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 4 C 0.14 2.82 5.29 -4.04 -0.02 2.80 16 5 N -0.60 -14.61 2.78 -181.12 -0.50 -15.12 16 6 C 0.17 3.93 8.52 59.85 0.51 4.44 16 7 C -0.25 -6.92 9.66 -15.06 -0.15 -7.07 16 8 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 9 C 0.00 0.04 5.08 -17.43 -0.09 -0.05 16 10 N -0.91 -26.46 10.71 55.49 0.59 -25.86 16 11 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 N -0.70 -12.12 4.52 -53.81 -0.24 -12.37 16 16 C 0.54 9.72 7.58 -10.99 -0.08 9.64 16 17 O -0.55 -11.83 15.92 5.56 0.09 -11.74 16 18 C -0.19 -2.62 5.91 -91.77 -0.54 -3.16 16 19 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 20 C -0.15 -1.72 9.88 -26.73 -0.26 -1.98 16 21 C -0.12 -1.57 5.92 -90.62 -0.54 -2.11 16 22 H 0.12 1.65 7.67 -51.93 -0.40 1.26 16 23 C -0.12 -1.26 10.19 37.15 0.38 -0.88 16 24 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.73 8.07 -51.92 -0.42 0.31 16 28 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 29 H 0.03 0.81 7.35 -51.93 -0.38 0.42 16 30 H 0.04 1.06 7.32 -51.93 -0.38 0.68 16 31 H -0.01 -0.14 5.76 -51.93 -0.30 -0.44 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.40 6.32 6.21 -40.82 -0.25 6.07 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 0.90 8.05 -51.92 -0.42 0.49 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.50 7.90 -51.92 -0.41 0.09 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -31.62 312.32 -7.30 -38.92 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.28 Total: 2.61 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.64 Total: 1.54 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.15 Total: -53.34 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.62 -7.30 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716034419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.586 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds