Wall clock time and date at job start Sun Mar 29 2020 22:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47126 * 2 1 4 4 C 1.53005 * 109.47353 * 119.99704 * 2 1 3 5 5 N 1.46497 * 109.47084 * 175.00391 * 4 2 1 6 6 C 1.46496 * 120.00307 * 90.00495 * 5 4 2 7 7 C 1.36936 * 119.99853 * 269.99655 * 5 4 2 8 8 H 1.08002 * 120.00135 * 141.72763 * 7 5 4 9 9 C 1.38817 * 120.00484 * 321.73610 * 7 5 4 10 10 N 1.31610 * 120.00306 * 157.44563 * 9 7 5 11 11 Si 1.86806 * 119.99476 * 337.44898 * 9 7 5 12 12 H 1.48494 * 109.46927 * 95.66649 * 11 9 7 13 13 H 1.48499 * 109.46852 * 215.66241 * 11 9 7 14 14 H 1.48497 * 109.47172 * 335.66543 * 11 9 7 15 15 N 1.46500 * 109.47447 * 240.00148 * 2 1 3 16 16 C 1.34780 * 120.00321 * 84.99832 * 15 2 1 17 17 O 1.21279 * 119.99718 * 359.97438 * 16 15 2 18 18 C 1.50693 * 120.00034 * 180.02562 * 16 15 2 19 19 H 1.08998 * 115.55103 * 325.67085 * 18 16 15 20 20 C 1.52998 * 117.49982 * 111.37561 * 18 16 15 21 21 C 1.52998 * 59.99998 * 107.49223 * 20 18 16 22 22 H 1.09000 * 117.49905 * 252.51330 * 21 20 18 23 23 C 1.52998 * 117.50362 * 107.49460 * 21 20 18 24 24 H 1.09006 * 109.47512 * 60.00360 * 1 2 3 25 25 H 1.08993 * 109.47617 * 300.00206 * 1 2 3 26 26 H 1.09007 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46865 * 295.00487 * 4 2 1 28 28 H 1.08998 * 109.46745 * 55.00316 * 4 2 1 29 29 H 1.08997 * 109.47752 * 85.62567 * 6 5 4 30 30 H 1.08996 * 109.47349 * 205.63214 * 6 5 4 31 31 H 1.09008 * 109.46527 * 325.62801 * 6 5 4 32 32 H 0.97006 * 120.00267 * 179.97438 * 10 9 7 33 33 H 0.97002 * 120.00062 * 264.99682 * 15 2 1 34 34 H 1.08997 * 117.50234 * 214.97847 * 20 18 16 35 35 H 1.09003 * 117.49732 * 0.02562 * 20 18 16 36 36 H 1.09009 * 109.46455 * 351.37394 * 23 21 20 37 37 H 1.08994 * 109.47679 * 111.37313 * 23 21 20 38 38 H 1.08999 * 109.47132 * 231.38232 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.3343 0.2342 1.7613 7 6 4.0850 -1.9157 0.6024 8 1 4.9789 -1.7939 0.0086 9 6 3.5290 -3.1767 0.7691 10 7 3.7829 -4.1285 -0.1037 11 14 2.4204 -3.5226 2.2324 12 1 1.0013 -3.3544 1.8288 13 1 2.6400 -4.9142 2.7016 14 1 2.7388 -2.5740 3.3297 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8582 1.1584 -2.4117 18 6 2.6489 -0.7288 -3.5877 19 1 3.3930 -1.5055 -3.4114 20 6 1.6566 -0.9471 -4.7315 21 6 2.7729 0.0892 -4.8746 22 1 2.4915 1.1414 -4.8313 23 6 3.9316 -0.2458 -5.8160 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7516 -0.1582 2.1370 28 1 1.6054 -1.7197 1.2952 29 1 4.4781 0.0501 2.8260 30 1 5.3022 0.2443 1.2604 31 1 3.8431 1.1973 1.6222 32 1 3.3947 -5.0098 0.0130 33 1 2.2491 -1.6317 -1.1526 34 1 1.7475 -1.8677 -5.3080 35 1 0.6407 -0.5764 -4.5941 36 1 3.8474 -1.2830 -6.1408 37 1 3.8955 0.4111 -6.6849 38 1 4.8773 -0.1047 -5.2927 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716490881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:23 Heat of formation + Delta-G solvation = 0.564299 kcal Electronic energy + Delta-G solvation = -18176.704035 eV Core-core repulsion = 15441.507247 eV Total energy + Delta-G solvation = -2735.196788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46800 -37.17738 -35.93018 -33.79566 -31.73278 -30.45820 -28.42636 -26.69465 -25.66795 -23.91324 -21.53870 -20.80708 -20.07995 -19.33459 -17.22371 -16.52489 -15.87306 -14.98134 -14.52728 -14.20668 -13.85736 -13.52863 -13.29600 -13.08320 -13.00035 -12.54745 -12.45359 -11.98182 -11.92169 -11.73809 -11.61102 -11.25091 -11.13588 -10.86557 -10.79749 -10.45023 -10.06392 -9.90646 -9.78036 -9.64264 -9.14139 -8.63192 -8.24095 -6.88009 -6.11976 -3.51511 3.12174 3.21600 3.40060 3.45602 3.87285 4.17543 4.41738 4.92509 5.03405 5.07673 5.17208 5.27809 5.49517 5.55041 5.70316 5.82035 5.87682 5.89258 5.91819 5.94217 6.04850 6.15831 6.22308 6.27611 6.29294 6.34021 6.49306 6.53782 6.59426 6.69636 6.79965 7.32977 7.94359 8.27522 8.42487 8.87763 9.02284 9.59159 10.03750 11.02712 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.008325 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.108229 B = 3362.649907 C = 3731.169628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 H 0.076 0.924 4 C 0.127 3.873 5 N -0.610 5.610 6 C 0.125 3.875 7 C -0.263 4.263 8 H 0.079 0.921 9 C 0.033 3.967 10 N -0.897 5.897 11 Si 0.872 3.128 12 H -0.285 1.285 13 H -0.300 1.300 14 H -0.270 1.270 15 N -0.686 5.686 16 C 0.542 3.458 17 O -0.571 6.571 18 C -0.181 4.181 19 H 0.127 0.873 20 C -0.153 4.153 21 C -0.127 4.127 22 H 0.113 0.887 23 C -0.122 4.122 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.007 0.993 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.417 0.583 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 5.189 -5.122 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.094 0.906 4 C 0.000 4.000 5 N -0.334 5.334 6 C -0.020 4.020 7 C -0.392 4.392 8 H 0.096 0.904 9 C -0.167 4.167 10 N -0.538 5.538 11 Si 0.702 3.298 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.195 1.195 15 N -0.336 5.336 16 C 0.329 3.671 17 O -0.452 6.452 18 C -0.202 4.202 19 H 0.145 0.855 20 C -0.191 4.191 21 C -0.146 4.146 22 H 0.131 0.869 23 C -0.179 4.179 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.255 0.745 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.334 5.822 -5.147 8.898 hybrid contribution -0.494 -0.908 1.012 1.447 sum -4.828 4.914 -4.136 8.035 Atomic orbital electron populations 1.22165 0.96687 1.01646 1.01622 1.21621 0.92268 0.97769 0.86771 0.90568 1.21533 0.85599 0.98835 0.94032 1.43995 0.99621 1.22008 1.67767 1.21079 0.95056 0.90316 0.95574 1.18797 1.12034 0.83769 1.24618 0.90351 1.25501 0.98555 0.95485 0.97208 1.69856 1.46112 1.03992 1.33848 0.87005 0.79917 0.76821 0.86037 1.21309 1.22814 1.19472 1.45885 1.64421 1.15228 1.08068 1.19526 0.77101 0.86407 0.84103 1.90588 1.52684 1.16270 1.85651 1.22342 1.04563 1.04261 0.89028 0.85471 1.23029 0.95260 1.00779 0.99995 1.22296 0.98212 0.97875 0.96192 0.86930 1.21377 0.97076 1.01297 0.98124 0.92618 0.92232 0.92781 0.92768 0.92391 0.97478 0.93647 0.95447 0.92572 0.74490 0.88154 0.88793 0.92420 0.92195 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.48 37.15 0.35 -2.36 16 2 C 0.12 2.41 2.88 -67.93 -0.20 2.21 16 3 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 4 C 0.13 2.63 4.18 -4.04 -0.02 2.61 16 5 N -0.61 -13.98 2.36 -181.12 -0.43 -14.40 16 6 C 0.12 2.51 10.70 59.84 0.64 3.15 16 7 C -0.26 -6.84 8.31 -15.06 -0.13 -6.97 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.03 0.88 5.01 -17.43 -0.09 0.79 16 10 N -0.90 -24.97 13.97 55.49 0.78 -24.20 16 11 Si 0.87 21.03 25.09 -169.99 -4.26 16.76 16 12 H -0.29 -6.63 6.68 56.52 0.38 -6.25 16 13 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 15 N -0.69 -14.09 4.49 -53.81 -0.24 -14.33 16 16 C 0.54 10.91 7.58 -10.99 -0.08 10.83 16 17 O -0.57 -12.69 15.92 5.56 0.09 -12.60 16 18 C -0.18 -3.08 5.91 -91.78 -0.54 -3.62 16 19 H 0.13 2.23 8.14 -51.93 -0.42 1.81 16 20 C -0.15 -2.15 9.88 -26.73 -0.26 -2.41 16 21 C -0.13 -1.85 5.92 -90.62 -0.54 -2.39 16 22 H 0.11 1.76 7.67 -51.93 -0.40 1.36 16 23 C -0.12 -1.45 10.19 37.16 0.38 -1.07 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.06 1.29 3.39 -51.93 -0.18 1.12 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 31 H 0.03 0.49 8.11 -51.92 -0.42 0.07 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.42 9.22 7.17 -40.82 -0.29 8.93 16 34 H 0.10 1.21 8.05 -51.93 -0.42 0.80 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.64 7.90 -51.92 -0.41 0.23 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -28.90 310.20 -6.18 -35.08 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.31 Total: 8.25 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.48 Total: 0.76 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.11 Total: -52.93 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.26 Total: 16.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.90 -6.18 -35.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716490881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.644 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds