Wall clock time and date at job start Sun Mar 29 2020 22:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47297 * 2 1 4 4 C 1.53007 * 109.47224 * 119.99846 * 2 1 3 5 5 N 1.46492 * 109.47179 * 175.00105 * 4 2 1 6 6 C 1.34779 * 120.00145 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99667 * 359.71544 * 6 5 4 8 8 C 1.50695 * 120.00465 * 179.72471 * 6 5 4 9 9 H 1.09004 * 115.54564 * 325.58216 * 8 6 5 10 10 C 1.53003 * 117.50088 * 111.24832 * 8 6 5 11 11 C 1.52998 * 117.50273 * 179.90926 * 8 6 5 12 12 H 1.08998 * 117.49515 * 0.02562 * 11 8 6 13 13 C 1.52998 * 117.49968 * 145.01876 * 11 8 6 14 14 N 1.46499 * 109.47047 * 239.99462 * 2 1 3 15 15 C 1.46495 * 120.00223 * 300.00174 * 14 2 1 16 16 C 1.36942 * 119.99479 * 120.00235 * 14 2 1 17 17 H 1.07998 * 120.00443 * 20.37278 * 16 14 2 18 18 C 1.38807 * 119.99431 * 200.37743 * 16 14 2 19 19 N 1.31620 * 120.00430 * 14.99072 * 18 16 14 20 20 Si 1.86808 * 119.99913 * 194.98673 * 18 16 14 21 21 H 1.48506 * 109.46741 * 85.00043 * 20 18 16 22 22 H 1.48489 * 109.47223 * 205.00130 * 20 18 16 23 23 H 1.48499 * 109.46861 * 325.00554 * 20 18 16 24 24 H 1.08993 * 109.46954 * 59.99852 * 1 2 3 25 25 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46703 * 300.00065 * 1 2 3 27 27 H 1.08998 * 109.46831 * 54.99538 * 4 2 1 28 28 H 1.09006 * 109.46614 * 295.00161 * 4 2 1 29 29 H 0.97002 * 120.00163 * 359.72292 * 5 4 2 30 30 H 1.09000 * 117.49898 * 214.98303 * 10 8 6 31 31 H 1.08999 * 117.49906 * 359.97438 * 10 8 6 32 32 H 1.09002 * 109.47442 * 59.99837 * 13 11 8 33 33 H 1.09001 * 109.47486 * 180.02562 * 13 11 8 34 34 H 1.09000 * 109.47073 * 300.00405 * 13 11 8 35 35 H 1.08997 * 109.47258 * 95.10904 * 15 14 2 36 36 H 1.08999 * 109.47149 * 215.10739 * 15 14 2 37 37 H 1.09001 * 109.47177 * 335.10774 * 15 14 2 38 38 H 0.97008 * 120.00047 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5703 -1.8799 3.1418 8 6 5.6744 -1.5428 2.1275 9 1 6.0936 -1.6826 1.1311 10 6 6.4880 -0.7182 3.1271 11 6 6.3802 -2.2359 3.2946 12 1 5.7586 -2.6101 4.1080 13 6 7.6209 -3.0719 2.9739 14 7 2.0183 -0.6907 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.8057 -0.0252 -2.0975 17 1 3.3355 0.8665 -1.7968 18 6 2.9226 -0.4968 -3.3978 19 7 2.0695 -1.3896 -3.8533 20 14 4.2906 0.1359 -4.5013 21 1 5.5270 -0.6495 -4.2567 22 1 3.8862 -0.0075 -5.9228 23 1 4.5462 1.5677 -4.2014 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7197 1.2952 28 1 1.7516 -0.1582 2.1370 29 1 3.9821 -0.4660 0.4299 30 1 7.4428 -0.3159 2.7884 31 1 5.9374 -0.0932 3.8301 32 1 8.3786 -2.4365 2.5155 33 1 8.0160 -3.5034 3.8936 34 1 7.3517 -3.8717 2.2841 35 1 0.7889 -2.1449 -2.0751 36 1 2.5000 -2.6047 -1.9056 37 1 1.4410 -2.5738 -0.4753 38 1 2.1515 -1.7194 -4.7619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717483436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:06 Heat of formation + Delta-G solvation = -0.947454 kcal Electronic energy + Delta-G solvation = -17700.220765 eV Core-core repulsion = 14964.958422 eV Total energy + Delta-G solvation = -2735.262343 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63789 -37.21645 -36.19522 -33.71412 -31.97708 -29.40141 -28.76979 -26.11927 -26.03830 -23.44048 -22.76543 -20.75817 -19.70789 -19.10501 -17.09959 -16.84461 -15.60492 -15.33535 -14.73067 -14.31944 -14.12907 -13.64723 -13.27023 -12.92969 -12.75904 -12.61823 -12.24242 -12.04757 -11.91274 -11.44945 -11.42279 -11.08465 -10.84669 -10.77318 -10.42017 -10.30990 -10.28371 -10.02025 -9.89631 -9.79321 -9.41861 -8.60371 -8.47013 -6.84556 -5.77015 -3.22033 2.85301 3.33823 3.40006 3.41893 3.62231 3.93354 4.43713 4.79895 4.83155 4.94457 5.29655 5.35865 5.37329 5.42449 5.59918 5.66483 5.69239 5.72414 5.92054 5.97706 6.02604 6.11956 6.19226 6.31835 6.32964 6.43554 6.75959 6.84278 6.89950 7.07200 7.37936 7.68890 7.77264 8.09910 8.33207 8.70794 9.18127 9.82036 10.30839 11.27450 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.007131 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.911676 B = 3925.350512 C = 4857.229260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.107 3.893 5 N -0.701 5.701 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.187 4.187 9 H 0.123 0.877 10 C -0.151 4.151 11 C -0.125 4.125 12 H 0.115 0.885 13 C -0.123 4.123 14 N -0.594 5.594 15 C 0.165 3.835 16 C -0.261 4.261 17 H 0.070 0.930 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.411 0.589 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.041 0.959 37 H -0.001 1.001 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 0.662 10.375 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.351 5.351 6 C 0.323 3.677 7 O -0.441 6.441 8 C -0.208 4.208 9 H 0.141 0.859 10 C -0.189 4.189 11 C -0.144 4.144 12 H 0.133 0.867 13 C -0.180 4.180 14 N -0.317 5.317 15 C 0.020 3.980 16 C -0.390 4.390 17 H 0.088 0.912 18 C -0.195 4.195 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.152 0.271 10.831 12.459 hybrid contribution 0.767 0.437 -1.304 1.575 sum 6.919 0.708 9.526 11.795 Atomic orbital electron populations 1.22188 0.97492 1.01371 1.00561 1.20615 0.92593 0.95509 0.86404 0.91383 1.21941 0.79711 1.01185 0.99092 1.45834 1.08193 1.58058 1.22972 1.19592 0.88083 0.77617 0.82421 1.90633 1.70101 1.49250 1.34146 1.22335 0.92174 1.08683 0.97581 0.85872 1.23068 1.00864 0.94152 1.00774 1.22338 0.98901 0.93931 0.99194 0.86703 1.21392 0.95436 0.99498 1.01669 1.43999 1.58236 1.08081 1.21365 1.20723 0.99768 0.83358 0.94107 1.19212 1.19858 1.09647 0.90331 0.91244 1.24969 0.98479 0.99549 0.96490 1.70096 1.35143 1.33472 1.16053 0.86310 0.81967 0.78427 0.80026 1.21487 1.21813 1.20587 0.92215 0.93167 0.93970 0.92201 0.92604 0.75273 0.88036 0.88511 0.92420 0.91951 0.91930 0.95347 0.94050 0.98289 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 2 C 0.16 3.06 2.87 -67.93 -0.19 2.86 16 3 H 0.07 1.30 7.85 -51.93 -0.41 0.90 16 4 C 0.11 1.94 4.93 -4.04 -0.02 1.92 16 5 N -0.70 -12.48 5.39 -60.29 -0.32 -12.81 16 6 C 0.54 9.46 7.61 -10.99 -0.08 9.38 16 7 O -0.56 -11.52 16.26 5.55 0.09 -11.43 16 8 C -0.19 -2.61 5.91 -91.77 -0.54 -3.16 16 9 H 0.12 1.63 8.14 -51.93 -0.42 1.20 16 10 C -0.15 -1.74 9.88 -26.69 -0.26 -2.01 16 11 C -0.13 -1.54 5.92 -90.58 -0.54 -2.08 16 12 H 0.11 1.57 7.67 -51.93 -0.40 1.17 16 13 C -0.12 -1.21 10.19 37.16 0.38 -0.83 16 14 N -0.59 -13.86 2.29 -173.49 -0.40 -14.26 16 15 C 0.16 3.98 8.00 59.84 0.48 4.46 16 16 C -0.26 -6.67 9.34 -15.06 -0.14 -6.81 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 19 N -0.90 -25.61 10.67 55.49 0.59 -25.02 16 20 Si 0.90 21.00 29.58 -169.99 -5.03 15.97 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.17 6.86 -51.93 -0.36 0.82 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.41 7.37 7.88 -40.82 -0.32 7.05 16 30 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 36 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 37 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -29.54 312.57 -7.34 -36.88 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.31 Total: 4.65 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.67 Total: 1.32 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.13 Total: -52.09 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.54 -7.34 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717483436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.932 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds