Wall clock time and date at job start Sun Mar 29 2020 22:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47468 * 2 1 4 4 N 1.46496 * 109.47331 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99916 * 84.26957 * 4 3 2 6 6 C 1.50694 * 120.00013 * 5.08185 * 5 4 3 7 7 O 1.21281 * 119.99986 * 185.07772 * 5 4 3 8 8 C 1.46503 * 120.00095 * 264.26822 * 4 3 2 9 9 H 1.09003 * 110.64017 * 358.04673 * 8 4 3 10 10 C 1.55158 * 110.71793 * 121.37753 * 8 4 3 11 11 C 1.54910 * 101.58236 * 153.86418 * 10 8 4 12 12 N 1.47423 * 104.83421 * 322.99510 * 11 10 8 13 13 C 1.36930 * 125.65048 * 204.09545 * 12 11 10 14 14 H 1.07994 * 120.00400 * 180.02562 * 13 12 11 15 15 C 1.38816 * 119.99829 * 0.02978 * 13 12 11 16 16 N 1.31623 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47038 * 90.00718 * 17 15 13 19 19 H 1.48499 * 109.47229 * 210.00592 * 17 15 13 20 20 H 1.48505 * 109.47311 * 330.00276 * 17 15 13 21 21 C 1.47030 * 108.70125 * 24.12169 * 12 11 10 22 22 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47627 * 299.99751 * 1 2 3 24 24 H 1.09002 * 109.47087 * 59.99948 * 1 2 3 25 25 H 1.09005 * 109.46849 * 240.00050 * 2 1 3 26 26 H 1.09007 * 109.46928 * 120.00508 * 2 1 3 27 27 H 1.09009 * 109.46853 * 59.99698 * 3 2 1 28 28 H 1.08995 * 109.47196 * 300.00388 * 3 2 1 29 29 H 1.09004 * 109.47491 * 354.77953 * 6 5 4 30 30 H 1.09002 * 109.47781 * 114.78112 * 6 5 4 31 31 H 1.09004 * 109.46875 * 234.78571 * 6 5 4 32 32 H 1.09007 * 111.00636 * 271.94083 * 10 8 4 33 33 H 1.09005 * 111.00470 * 35.79050 * 10 8 4 34 34 H 1.08995 * 110.36670 * 204.14709 * 11 10 8 35 35 H 1.09007 * 110.45868 * 81.87627 * 11 10 8 36 36 H 0.96998 * 119.99721 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.88082 * 239.52643 * 21 12 11 38 38 H 1.09003 * 110.00437 * 118.43506 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1793 1.3257 -1.1605 6 6 3.4308 1.3104 -2.4683 7 8 5.3886 1.2329 -1.1527 8 6 4.2370 1.5693 1.2633 9 1 3.5459 1.6881 2.0978 10 6 5.1657 0.3462 1.4847 11 6 6.2656 0.9511 2.3924 12 7 6.4571 2.3238 1.8898 13 6 7.5908 3.0772 2.0383 14 1 7.6318 4.0770 1.6321 15 6 8.6875 2.5558 2.7109 16 7 8.6377 1.3370 3.2055 17 14 10.2338 3.5838 2.9141 18 1 10.1465 4.3656 4.1736 19 1 11.4188 2.6903 2.9673 20 1 10.3657 4.5126 1.7630 21 6 5.2288 2.7500 1.2032 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5140 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 2.3584 1.3101 -2.2732 30 1 3.6943 2.1950 -3.0481 31 1 3.6983 0.4151 -3.0295 32 1 4.6368 -0.4587 1.9952 33 1 5.5857 -0.0014 0.5407 34 1 7.1898 0.3808 2.2999 35 1 5.9348 0.9702 3.4309 36 1 9.4042 0.9726 3.6752 37 1 5.4507 2.9952 0.1646 38 1 4.8026 3.6181 1.7060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732035715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:52 Heat of formation + Delta-G solvation = -28.681223 kcal Electronic energy + Delta-G solvation = -18190.736891 eV Core-core repulsion = 15454.271922 eV Total energy + Delta-G solvation = -2736.464969 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29681 -38.46055 -37.08995 -34.64494 -33.23413 -31.45281 -30.40992 -28.65051 -26.90183 -26.16034 -22.99737 -22.28096 -21.97488 -19.64485 -18.94824 -17.93477 -17.34865 -16.73179 -16.19092 -15.81339 -15.57935 -15.25850 -14.61947 -14.24952 -14.15410 -13.76710 -13.52357 -13.42077 -13.17663 -12.97979 -12.84129 -12.68570 -12.50858 -12.38038 -12.20210 -12.03640 -11.96250 -11.83749 -11.61863 -11.31147 -10.75296 -10.45083 -9.54649 -8.87602 -7.77739 -5.21833 1.42428 1.46493 1.55018 1.73910 2.07674 2.49878 3.30869 3.68004 3.75330 3.91312 4.04650 4.10949 4.22574 4.26028 4.39189 4.53644 4.64692 4.66690 4.68419 4.76329 4.76661 4.94316 4.97207 5.01491 5.07461 5.12723 5.29548 5.33268 5.41251 5.54192 5.63448 5.77566 5.81914 6.29542 6.57814 7.09556 7.35909 7.77443 8.41946 9.24329 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.006029 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.798623 B = 4642.723970 C = 4918.840416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.102 3.898 4 N -0.603 5.603 5 C 0.491 3.509 6 C -0.165 4.165 7 O -0.584 6.584 8 C 0.150 3.850 9 H 0.115 0.885 10 C -0.139 4.139 11 C 0.160 3.840 12 N -0.619 5.619 13 C -0.240 4.240 14 H 0.074 0.926 15 C -0.069 4.069 16 N -0.951 5.951 17 Si 0.985 3.015 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.273 1.273 21 C 0.131 3.869 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.065 0.935 35 H -0.004 1.004 36 H 0.247 0.753 37 H 0.016 0.984 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.946 -1.671 -8.331 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.019 4.019 4 N -0.335 5.335 5 C 0.282 3.718 6 C -0.224 4.224 7 O -0.464 6.464 8 C 0.046 3.954 9 H 0.133 0.867 10 C -0.178 4.178 11 C 0.035 3.965 12 N -0.345 5.345 13 C -0.369 4.369 14 H 0.092 0.908 15 C -0.261 4.261 16 N -0.601 5.601 17 Si 0.812 3.188 18 H -0.207 1.207 19 H -0.217 1.217 20 H -0.198 1.198 21 C 0.004 3.996 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.014 0.986 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -19.152 -1.706 -8.262 20.928 hybrid contribution 1.312 0.352 0.426 1.424 sum -17.840 -1.355 -7.836 19.533 Atomic orbital electron populations 1.21669 0.93293 1.02377 1.02847 1.21968 0.97427 0.96339 1.02235 1.22055 0.76629 0.97998 1.05210 1.48150 1.07941 1.72159 1.05293 1.21734 0.87758 0.74979 0.87364 1.22023 1.02442 1.05605 0.92362 1.90809 1.17200 1.50245 1.88119 1.21904 0.92865 0.94187 0.86477 0.86677 1.23166 0.97218 0.97348 1.00080 1.21600 0.97030 0.85567 0.92313 1.44589 1.11484 1.13978 1.64441 1.19433 0.91351 0.96684 1.29409 0.90786 1.25680 1.01435 0.98273 1.00744 1.70080 1.30460 1.16412 1.43103 0.84991 0.78431 0.77333 0.78038 1.20655 1.21719 1.19841 1.21605 0.87321 0.95630 0.95025 0.92382 0.92120 0.91107 0.91884 0.92990 0.88951 0.87503 0.86903 0.88316 0.88471 0.90109 0.92482 0.91721 0.98628 0.94323 0.96636 0.95880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.14 -2.09 6.09 30.59 0.19 -1.91 16 3 C 0.10 1.69 5.03 86.38 0.43 2.12 16 4 N -0.60 -17.09 2.55 -791.27 -2.02 -19.11 16 5 C 0.49 15.84 6.81 87.66 0.60 16.44 16 6 C -0.17 -3.16 9.84 71.23 0.70 -2.46 16 7 O -0.58 -26.86 13.48 -3.03 -0.04 -26.91 16 8 C 0.15 5.50 3.45 46.18 0.16 5.66 16 9 H 0.12 3.56 7.78 -2.39 -0.02 3.54 16 10 C -0.14 -5.99 6.42 31.99 0.21 -5.78 16 11 C 0.16 8.78 5.89 86.86 0.51 9.29 16 12 N -0.62 -35.73 3.39 -691.99 -2.35 -38.08 16 13 C -0.24 -14.86 10.27 84.04 0.86 -13.99 16 14 H 0.07 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 16 N -0.95 -60.74 10.09 21.65 0.22 -60.52 16 17 Si 0.98 48.91 29.55 68.60 2.03 50.94 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 21 C 0.13 6.14 6.48 86.73 0.56 6.70 16 22 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.97 7.81 -2.38 -0.02 0.95 16 26 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.09 1.34 7.82 -2.38 -0.02 1.32 16 28 H 0.11 1.18 6.14 -2.39 -0.01 1.16 16 29 H 0.11 1.29 5.22 -2.38 -0.01 1.28 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 33 H 0.06 2.77 5.95 -2.38 -0.01 2.75 16 34 H 0.06 4.08 5.87 -2.39 -0.01 4.06 16 35 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 36 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.02 0.80 6.12 -2.39 -0.01 0.78 16 38 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -80.64 298.21 4.26 -76.38 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.03 Total: 5.71 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.40 Total: 11.58 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.15 Total: -117.71 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.04 Total: -26.91 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -80.64 4.26 -76.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732035715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.696 kcal (2) G-P(sol) polarization free energy of solvation -80.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds