Wall clock time and date at job start Sun Mar 29 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.53004 * 109.47306 * 240.00678 * 2 1 3 5 5 N 1.46493 * 109.47168 * 184.99422 * 4 2 1 6 6 C 1.36938 * 119.99988 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00121 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99680 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00230 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47422 * 90.00214 * 10 8 6 12 12 H 1.48503 * 109.47276 * 210.00238 * 10 8 6 13 13 H 1.48508 * 109.47049 * 329.99963 * 10 8 6 14 14 N 1.46499 * 109.47405 * 120.00335 * 2 1 3 15 15 C 1.46497 * 120.00005 * 60.00171 * 14 2 1 16 16 C 1.34775 * 120.00113 * 240.00337 * 14 2 1 17 17 O 1.21289 * 119.99837 * 359.97438 * 16 14 2 18 18 C 1.50692 * 120.00347 * 179.97438 * 16 14 2 19 19 H 1.09008 * 115.54779 * 34.27688 * 18 16 14 20 20 C 1.53000 * 117.50104 * 248.61074 * 18 16 14 21 21 C 1.53002 * 60.02940 * 252.47218 * 20 18 16 22 22 H 1.09000 * 117.49996 * 107.50493 * 21 20 18 23 23 C 1.53002 * 117.49773 * 252.51785 * 21 20 18 24 24 H 1.08999 * 109.47501 * 59.99722 * 1 2 3 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47496 * 299.99247 * 1 2 3 27 27 H 1.08997 * 109.46440 * 304.99724 * 4 2 1 28 28 H 1.08997 * 109.47109 * 64.99287 * 4 2 1 29 29 H 0.97001 * 119.99863 * 0.02562 * 5 4 2 30 30 H 0.97008 * 119.99976 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47218 * 270.00246 * 15 14 2 32 32 H 1.09002 * 109.47170 * 30.00061 * 15 14 2 33 33 H 1.08997 * 109.47467 * 149.99897 * 15 14 2 34 34 H 1.09002 * 117.49833 * 359.97323 * 20 18 16 35 35 H 1.09002 * 117.49953 * 144.97364 * 20 18 16 36 36 H 1.09005 * 109.47034 * 8.60952 * 23 21 20 37 37 H 1.08996 * 109.47323 * 128.60841 * 23 21 20 38 38 H 1.08997 * 109.47719 * 248.61411 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8261 -1.1907 6 6 4.1838 -1.4384 -2.2070 7 1 3.6468 -1.8436 -3.0518 8 6 5.5672 -1.5384 -2.1512 9 7 6.2216 -1.0451 -1.1212 10 14 6.5000 -2.3730 -3.5377 11 1 6.8627 -1.3659 -4.5669 12 1 7.7352 -2.9965 -2.9984 13 1 5.6437 -3.4204 -4.1502 14 7 2.0184 -0.6907 1.1961 15 6 1.6645 -2.0932 1.4278 16 6 2.7932 -0.0357 2.0833 17 8 3.0865 1.1254 1.8912 18 6 3.2951 -0.7459 3.3139 19 1 3.5208 -1.8047 3.1865 20 6 2.7320 -0.3013 4.6653 21 6 4.1710 0.0516 4.2834 22 1 4.3845 1.0903 4.0312 23 6 5.2960 -0.6985 4.9994 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6054 -1.7196 -1.2953 28 1 1.7516 -0.1582 -2.1370 29 1 3.9823 -0.4625 -0.4317 30 1 7.1884 -1.1152 -1.0820 31 1 0.7377 -2.1445 1.9992 32 1 1.5296 -2.5969 0.4706 33 1 2.4630 -2.5820 1.9861 34 1 1.9988 0.5052 4.6642 35 1 2.5869 -1.0676 5.4268 36 1 4.8722 -1.5083 5.5934 37 1 5.9846 -1.1108 4.2619 38 1 5.8327 -0.0110 5.6530 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732436216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:59 Heat of formation + Delta-G solvation = -1.113015 kcal Electronic energy + Delta-G solvation = -17952.034262 eV Core-core repulsion = 15216.764740 eV Total energy + Delta-G solvation = -2735.269522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87625 -37.25421 -35.76210 -33.91698 -31.83460 -30.05222 -28.53383 -26.53769 -25.61635 -24.15906 -22.47359 -20.98566 -20.00037 -18.48230 -17.14316 -17.00828 -15.93994 -15.09385 -14.70369 -14.15508 -13.96018 -13.58326 -13.19177 -13.12576 -12.74504 -12.61560 -12.25529 -12.23767 -12.11096 -11.87889 -11.68777 -11.45382 -11.21526 -10.83030 -10.72572 -10.42531 -10.18926 -10.01871 -9.83877 -9.66092 -9.27939 -8.83194 -8.16707 -6.85774 -5.69391 -2.98893 2.92311 3.38144 3.45910 3.50468 3.52351 4.01694 4.61848 4.73415 4.92521 4.93942 5.21363 5.36924 5.43884 5.46813 5.51808 5.60829 5.66915 5.71627 5.76531 5.80001 5.88611 5.97328 6.03376 6.14318 6.17207 6.21407 6.23817 6.42493 6.46805 6.56306 6.77731 7.07596 7.73178 7.84872 8.47962 8.67509 9.59278 10.18765 10.54284 11.52582 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.007811 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.136788 B = 3583.979621 C = 4592.136192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.593 5.593 15 C 0.085 3.915 16 C 0.548 3.452 17 O -0.543 6.543 18 C -0.183 4.183 19 H 0.124 0.876 20 C -0.153 4.153 21 C -0.121 4.121 22 H 0.116 0.884 23 C -0.123 4.123 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.387 0.613 30 H 0.254 0.746 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -1.656 11.047 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.326 5.326 15 C -0.059 4.059 16 C 0.336 3.664 17 O -0.420 6.420 18 C -0.204 4.204 19 H 0.141 0.859 20 C -0.191 4.191 21 C -0.140 4.140 22 H 0.134 0.866 23 C -0.180 4.180 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.221 0.779 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.867 -1.140 10.779 14.658 hybrid contribution 0.724 -0.580 -0.711 1.169 sum -9.143 -1.720 10.068 13.709 Atomic orbital electron populations 1.22041 0.95240 1.01993 1.01917 1.21379 0.93197 0.98534 0.84749 0.88310 1.21001 0.87155 0.96709 0.93666 1.42309 0.99680 1.70105 1.25137 1.19212 0.89453 1.29432 0.99126 0.91315 1.24756 0.96453 1.01736 0.98026 1.69701 1.07088 1.50766 1.30077 0.86211 0.79521 0.78984 0.81577 1.21765 1.21836 1.20850 1.47558 1.50522 1.12202 1.22276 1.21685 0.99737 0.82053 1.02396 1.19525 0.77316 0.86236 0.83295 1.90664 1.57448 1.17317 1.76602 1.22321 1.07144 1.00918 0.89987 0.85856 1.23053 0.97474 1.03119 0.95434 1.22338 0.91371 1.00681 0.99572 0.86622 1.21387 0.97302 0.99455 0.99837 0.91498 0.92437 0.92752 0.96223 0.95493 0.77889 0.93597 0.93448 0.90598 0.91260 0.88696 0.88217 0.92676 0.91527 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.19 37.16 0.34 -1.72 16 2 C 0.12 2.24 2.80 -67.93 -0.19 2.05 16 3 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 4 C 0.14 2.99 5.50 -4.04 -0.02 2.96 16 5 N -0.73 -19.34 5.43 -59.91 -0.33 -19.67 16 6 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 10 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 N -0.59 -10.36 2.24 -173.94 -0.39 -10.75 16 15 C 0.08 1.19 9.32 59.85 0.56 1.75 16 16 C 0.55 10.44 7.16 -10.99 -0.08 10.36 16 17 O -0.54 -12.34 15.59 5.55 0.09 -12.26 16 18 C -0.18 -2.79 5.01 -91.74 -0.46 -3.25 16 19 H 0.12 1.76 6.44 -51.92 -0.33 1.43 16 20 C -0.15 -1.85 9.88 -26.73 -0.26 -2.11 16 21 C -0.12 -1.72 5.92 -90.58 -0.54 -2.25 16 22 H 0.12 1.86 7.67 -51.93 -0.40 1.46 16 23 C -0.12 -1.45 10.19 37.16 0.38 -1.08 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.40 6.88 -51.93 -0.36 0.04 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.39 11.20 7.06 -40.82 -0.29 10.91 16 30 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 33 H 0.07 0.94 5.99 -51.93 -0.31 0.63 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -33.87 311.90 -6.87 -40.74 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.12 Total: 8.63 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.52 Total: -0.88 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.01 Total: -58.82 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.87 -6.87 -40.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732436216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.623 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds