Wall clock time and date at job start Sun Mar 29 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.53004 * 109.47306 * 240.00678 * 2 1 3 5 5 N 1.46493 * 109.47168 * 184.99422 * 4 2 1 6 6 C 1.36938 * 119.99988 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00121 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99680 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00230 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47422 * 90.00214 * 10 8 6 12 12 H 1.48503 * 109.47276 * 210.00238 * 10 8 6 13 13 H 1.48508 * 109.47049 * 329.99963 * 10 8 6 14 14 N 1.46499 * 109.47405 * 120.00335 * 2 1 3 15 15 C 1.46497 * 120.00005 * 60.00171 * 14 2 1 16 16 C 1.34775 * 120.00113 * 240.00337 * 14 2 1 17 17 O 1.21289 * 119.99837 * 359.97438 * 16 14 2 18 18 C 1.50692 * 120.00347 * 179.97438 * 16 14 2 19 19 H 1.09008 * 115.54779 * 34.27688 * 18 16 14 20 20 C 1.53000 * 117.50104 * 248.61074 * 18 16 14 21 21 C 1.53002 * 60.02940 * 252.47218 * 20 18 16 22 22 H 1.09000 * 117.49996 * 107.50493 * 21 20 18 23 23 C 1.53002 * 117.49773 * 252.51785 * 21 20 18 24 24 H 1.08999 * 109.47501 * 59.99722 * 1 2 3 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47496 * 299.99247 * 1 2 3 27 27 H 1.08997 * 109.46440 * 304.99724 * 4 2 1 28 28 H 1.08997 * 109.47109 * 64.99287 * 4 2 1 29 29 H 0.97001 * 119.99863 * 0.02562 * 5 4 2 30 30 H 0.97008 * 119.99976 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47218 * 270.00246 * 15 14 2 32 32 H 1.09002 * 109.47170 * 30.00061 * 15 14 2 33 33 H 1.08997 * 109.47467 * 149.99897 * 15 14 2 34 34 H 1.09002 * 117.49833 * 359.97323 * 20 18 16 35 35 H 1.09002 * 117.49953 * 144.97364 * 20 18 16 36 36 H 1.09005 * 109.47034 * 8.60952 * 23 21 20 37 37 H 1.08996 * 109.47323 * 128.60841 * 23 21 20 38 38 H 1.08997 * 109.47719 * 248.61411 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8261 -1.1907 6 6 4.1838 -1.4384 -2.2070 7 1 3.6468 -1.8436 -3.0518 8 6 5.5672 -1.5384 -2.1512 9 7 6.2216 -1.0451 -1.1212 10 14 6.5000 -2.3730 -3.5377 11 1 6.8627 -1.3659 -4.5669 12 1 7.7352 -2.9965 -2.9984 13 1 5.6437 -3.4204 -4.1502 14 7 2.0184 -0.6907 1.1961 15 6 1.6645 -2.0932 1.4278 16 6 2.7932 -0.0357 2.0833 17 8 3.0865 1.1254 1.8912 18 6 3.2951 -0.7459 3.3139 19 1 3.5208 -1.8047 3.1865 20 6 2.7320 -0.3013 4.6653 21 6 4.1710 0.0516 4.2834 22 1 4.3845 1.0903 4.0312 23 6 5.2960 -0.6985 4.9994 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6054 -1.7196 -1.2953 28 1 1.7516 -0.1582 -2.1370 29 1 3.9823 -0.4625 -0.4317 30 1 7.1884 -1.1152 -1.0820 31 1 0.7377 -2.1445 1.9992 32 1 1.5296 -2.5969 0.4706 33 1 2.4630 -2.5820 1.9861 34 1 1.9988 0.5052 4.6642 35 1 2.5869 -1.0676 5.4268 36 1 4.8722 -1.5083 5.5934 37 1 5.9846 -1.1108 4.2619 38 1 5.8327 -0.0110 5.6530 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732436216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:59 Heat of formation + Delta-G solvation = -23.474718 kcal Electronic energy + Delta-G solvation = -17953.003938 eV Core-core repulsion = 15216.764740 eV Total energy + Delta-G solvation = -2736.239198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25557 -38.54387 -37.22469 -35.82972 -33.53700 -31.85273 -29.54035 -27.76397 -27.41212 -25.45971 -24.38119 -22.17990 -21.29179 -19.87472 -19.12401 -18.46301 -17.34912 -16.74215 -16.43798 -15.57916 -15.30926 -15.23529 -14.91603 -14.32280 -14.03144 -13.86303 -13.71667 -13.58216 -13.28995 -13.25648 -12.96544 -12.81118 -12.77601 -12.51414 -12.28206 -12.15725 -11.82735 -11.74931 -11.29582 -10.99508 -10.93588 -10.69210 -9.55187 -9.01984 -7.94633 -5.25431 1.44043 1.47108 1.55223 1.55380 2.08117 2.54165 2.87468 3.37586 3.53099 3.79191 3.84658 3.90250 4.09685 4.18417 4.27608 4.38539 4.42962 4.45936 4.70987 4.75446 4.78832 4.83478 4.85169 4.91766 4.93764 5.00768 5.07313 5.15571 5.22145 5.29707 5.41784 5.45881 5.68907 6.24618 6.48434 7.25438 7.30872 8.06988 8.30633 9.28373 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.007811 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.136788 B = 3583.979621 C = 4592.136192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.063 0.937 4 C 0.141 3.859 5 N -0.743 5.743 6 C -0.246 4.246 7 H 0.079 0.921 8 C -0.078 4.078 9 N -0.970 5.970 10 Si 0.977 3.023 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.264 1.264 14 N -0.594 5.594 15 C 0.081 3.919 16 C 0.533 3.467 17 O -0.596 6.596 18 C -0.201 4.201 19 H 0.135 0.865 20 C -0.114 4.114 21 C -0.138 4.138 22 H 0.085 0.915 23 C -0.116 4.116 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.370 0.630 30 H 0.249 0.751 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 -3.532 11.619 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.081 0.919 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.097 0.903 8 C -0.271 4.271 9 N -0.620 5.620 10 Si 0.806 3.194 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.189 1.189 14 N -0.325 5.325 15 C -0.061 4.061 16 C 0.323 3.677 17 O -0.478 6.478 18 C -0.222 4.222 19 H 0.153 0.847 20 C -0.151 4.151 21 C -0.157 4.157 22 H 0.103 0.897 23 C -0.173 4.173 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.202 0.798 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.659 -3.057 11.327 16.541 hybrid contribution 1.189 0.037 -0.913 1.500 sum -10.470 -3.020 10.415 15.073 Atomic orbital electron populations 1.21941 0.91120 1.03693 1.03032 1.21278 0.96184 0.96227 0.83977 0.91910 1.21216 0.84183 0.97914 0.95300 1.42535 1.02000 1.69849 1.24135 1.19671 0.90012 1.28472 0.99595 0.90285 1.25652 0.97558 1.03159 1.00687 1.69894 1.06892 1.52816 1.32412 0.85084 0.77902 0.78093 0.78311 1.21723 1.22200 1.18908 1.47726 1.49834 1.13467 1.21484 1.21908 1.01672 0.79822 1.02710 1.20281 0.76877 0.85959 0.84564 1.90627 1.59437 1.19721 1.78015 1.22342 1.09132 1.00994 0.89735 0.84745 1.23170 0.95293 1.03164 0.93491 1.22394 0.93784 0.99347 1.00182 0.89705 1.21365 0.96282 1.00205 0.99475 0.90195 0.90327 0.91903 0.94343 0.95290 0.79796 0.94210 0.89606 0.91225 0.90881 0.88890 0.84349 0.89964 0.93535 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 2 C 0.13 4.55 2.80 44.99 0.13 4.68 16 3 H 0.06 2.70 6.90 -2.38 -0.02 2.69 16 4 C 0.14 5.82 5.50 86.38 0.48 6.30 16 5 N -0.74 -40.11 5.43 -343.46 -1.87 -41.98 16 6 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 9 N -0.97 -62.52 13.06 21.65 0.28 -62.23 16 10 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 13 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 14 N -0.59 -20.54 2.24 -822.60 -1.85 -22.39 16 15 C 0.08 2.10 9.32 127.77 1.19 3.29 16 16 C 0.53 20.81 7.16 87.65 0.63 21.44 16 17 O -0.60 -28.76 15.59 -3.06 -0.05 -28.81 16 18 C -0.20 -6.04 5.01 -11.52 -0.06 -6.10 16 19 H 0.13 3.68 6.44 -2.38 -0.02 3.66 16 20 C -0.11 -2.49 9.88 30.60 0.30 -2.18 16 21 C -0.14 -3.91 5.92 -10.77 -0.06 -3.98 16 22 H 0.08 2.91 7.67 -2.39 -0.02 2.89 16 23 C -0.12 -2.63 10.19 71.98 0.73 -1.90 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.47 6.88 -2.39 -0.02 1.46 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.37 22.26 7.06 -92.71 -0.65 21.61 16 30 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.90 6.53 -2.39 -0.02 1.88 16 33 H 0.07 1.85 5.99 -2.39 -0.01 1.83 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.14 1.98 8.05 -2.39 -0.02 1.96 16 36 H 0.08 1.40 7.90 -2.38 -0.02 1.38 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -76.39 311.90 4.24 -72.16 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.38 Total: 32.60 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.30 Total: 1.18 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -3.43 Total: -126.59 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.05 Total: -28.81 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -76.39 4.24 -72.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732436216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.681 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds