Wall clock time and date at job start Sun Mar 29 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47155 * 2 1 4 4 C 1.53005 * 109.47211 * 119.99566 * 2 1 3 5 5 N 1.46499 * 109.47186 * 295.00021 * 4 2 1 6 6 C 1.36938 * 119.99967 * 179.97438 * 5 4 2 7 7 H 1.07991 * 120.00273 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99736 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99291 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00099 * 0.02562 * 8 6 5 11 11 H 1.48490 * 109.47418 * 90.00088 * 10 8 6 12 12 H 1.48499 * 109.46820 * 209.99959 * 10 8 6 13 13 H 1.48502 * 109.47027 * 329.99477 * 10 8 6 14 14 C 1.53000 * 109.47154 * 239.99690 * 2 1 3 15 15 N 1.46503 * 109.46976 * 64.99872 * 14 2 1 16 16 C 1.34777 * 119.99758 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99958 * 0.02562 * 16 15 14 18 18 C 1.50691 * 119.99736 * 180.02562 * 16 15 14 19 19 H 1.09005 * 115.55487 * 325.66676 * 18 16 15 20 20 C 1.53075 * 117.51426 * 111.39509 * 18 16 15 21 21 C 1.52998 * 59.98501 * 107.47892 * 20 18 16 22 22 H 1.09001 * 117.49349 * 252.49867 * 21 20 18 23 23 C 1.52997 * 117.50214 * 107.50627 * 21 20 18 24 24 H 1.09005 * 109.47108 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47325 * 300.00280 * 1 2 3 26 26 H 1.08994 * 109.47419 * 60.00282 * 1 2 3 27 27 H 1.09000 * 109.47192 * 54.99994 * 4 2 1 28 28 H 1.08998 * 109.47183 * 175.00080 * 4 2 1 29 29 H 0.97007 * 120.00012 * 0.02562 * 5 4 2 30 30 H 0.97003 * 119.99059 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46955 * 304.99768 * 14 2 1 32 32 H 1.09001 * 109.47199 * 185.00114 * 14 2 1 33 33 H 0.96994 * 119.99862 * 0.02562 * 15 14 2 34 34 H 1.08996 * 117.49148 * 359.97438 * 20 18 16 35 35 H 1.09004 * 117.51186 * 214.95579 * 20 18 16 36 36 H 1.09002 * 109.47153 * 351.24871 * 23 21 20 37 37 H 1.09001 * 109.46832 * 231.25062 * 23 21 20 38 38 H 1.09004 * 109.47261 * 111.25043 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4206 3.6856 7 1 2.5621 -1.3378 3.7866 8 6 1.6334 0.2962 4.8162 9 7 1.9690 -0.1420 6.0110 10 14 0.6624 1.8824 4.6416 11 1 -0.7908 1.5784 4.6656 12 1 0.9962 2.7933 5.7658 13 1 1.0102 2.5365 3.3546 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4424 16 6 1.9964 -0.4133 -3.6659 17 8 2.6264 -1.4434 -3.7791 18 6 1.5982 0.3652 -4.8931 19 1 0.6368 0.8756 -4.8348 20 6 2.7129 1.0461 -5.6912 21 6 2.0185 -0.1960 -6.2530 22 1 2.5831 -1.1284 -6.2599 23 6 1.0573 0.0020 -7.4268 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2057 29 1 1.1482 0.8592 2.3518 30 1 1.7117 0.3587 6.8010 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7996 -1.2055 33 1 1.1488 0.8593 -2.3517 34 1 3.7341 0.9311 -5.3280 35 1 2.4850 2.0045 -6.1578 36 1 0.8984 1.0679 -7.5905 37 1 0.1045 -0.4769 -7.2009 38 1 1.4841 -0.4439 -8.3252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753625574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:00 Heat of formation + Delta-G solvation = -40.148740 kcal Electronic energy + Delta-G solvation = -16776.064770 eV Core-core repulsion = 14039.102532 eV Total energy + Delta-G solvation = -2736.962238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08353 -38.66056 -37.58177 -36.02738 -34.16229 -32.41900 -29.70341 -27.95193 -27.41791 -24.87406 -23.56728 -21.80995 -21.63918 -20.88658 -19.63080 -18.32671 -17.29602 -16.62807 -16.52243 -15.89287 -15.69235 -15.35787 -14.93200 -14.85773 -14.27576 -14.10008 -13.82570 -13.69691 -13.62267 -13.22037 -12.90931 -12.86667 -12.32319 -12.27424 -12.08212 -12.00458 -11.77981 -11.70523 -11.32731 -11.06435 -10.99667 -10.80782 -10.12390 -9.31858 -8.03831 -5.38266 1.36914 1.42217 1.47208 1.49496 2.11084 2.48205 2.86657 3.27292 3.52955 3.69160 3.79811 3.87875 3.91776 4.00858 4.10360 4.23625 4.43413 4.49942 4.65900 4.71329 4.80174 4.88474 4.90904 4.95999 5.00361 5.06963 5.08016 5.22423 5.26813 5.36305 5.43189 5.46762 5.74090 6.19821 6.54384 7.06578 7.23139 7.81168 8.02432 9.17898 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054753 B = 0.003764 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.267646 B = 7436.356474 C = 7677.792082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.159 3.841 5 N -0.753 5.753 6 C -0.240 4.240 7 H 0.052 0.948 8 C -0.067 4.067 9 N -0.986 5.986 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.247 1.247 14 C 0.136 3.864 15 N -0.709 5.709 16 C 0.534 3.466 17 O -0.592 6.592 18 C -0.194 4.194 19 H 0.152 0.848 20 C -0.137 4.137 21 C -0.131 4.131 22 H 0.090 0.910 23 C -0.118 4.118 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.369 0.631 30 H 0.259 0.741 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.416 0.584 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 6.808 -27.446 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.106 0.894 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.371 4.371 7 H 0.070 0.930 8 C -0.258 4.258 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.171 1.171 14 C 0.011 3.989 15 N -0.361 5.361 16 C 0.322 3.678 17 O -0.473 6.473 18 C -0.214 4.214 19 H 0.170 0.830 20 C -0.175 4.175 21 C -0.150 4.150 22 H 0.108 0.892 23 C -0.175 4.175 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.203 0.797 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.326 5.929 -27.368 28.335 hybrid contribution -0.384 0.667 1.036 1.291 sum -4.710 6.596 -26.331 27.550 Atomic orbital electron populations 1.21807 0.93490 1.02353 1.02237 1.21388 0.97496 1.00370 0.92363 0.89411 1.20704 0.96887 0.94232 0.84980 1.42622 1.67833 1.27677 1.01857 1.19038 1.28287 1.05695 0.84031 0.92974 1.25599 1.02650 1.03054 0.94501 1.69906 1.53330 1.42366 0.97989 0.85341 0.78713 0.79384 0.77952 1.20112 1.22254 1.17094 1.21126 0.99450 0.95116 0.83218 1.45833 1.57425 1.27984 1.04849 1.20322 0.77982 0.84559 0.84939 1.90681 1.42471 1.26733 1.87381 1.22385 1.03084 1.05894 0.90075 0.83010 1.23212 0.95653 0.97950 1.00662 1.22406 1.01835 0.98255 0.92519 0.89194 1.21396 0.97744 1.03008 0.95395 0.92867 0.93220 0.90098 0.95758 0.95992 0.79725 0.93264 0.92057 0.92439 0.74625 0.89612 0.84899 0.90614 0.91850 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.94 71.98 0.64 -2.75 16 2 C -0.10 -2.59 2.46 -10.79 -0.03 -2.62 16 3 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 4 C 0.16 5.98 5.65 86.38 0.49 6.46 16 5 N -0.75 -34.89 5.13 -343.45 -1.76 -36.65 16 6 C -0.24 -13.87 10.47 84.03 0.88 -12.99 16 7 H 0.05 3.34 8.06 -2.92 -0.02 3.32 16 8 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 9 N -0.99 -63.82 13.97 21.65 0.30 -63.52 16 10 Si 0.96 44.78 27.74 68.60 1.90 46.68 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 14 C 0.14 3.43 5.06 86.38 0.44 3.87 16 15 N -0.71 -14.33 5.28 -463.06 -2.45 -16.77 16 16 C 0.53 12.59 7.61 87.65 0.67 13.26 16 17 O -0.59 -19.66 16.26 -3.03 -0.05 -19.71 16 18 C -0.19 -2.96 5.91 -11.52 -0.07 -3.02 16 19 H 0.15 1.41 8.14 -2.38 -0.02 1.39 16 20 C -0.14 -1.78 9.88 30.62 0.30 -1.47 16 21 C -0.13 -2.02 5.92 -10.79 -0.06 -2.08 16 22 H 0.09 1.88 7.67 -2.39 -0.02 1.86 16 23 C -0.12 -1.16 10.19 71.98 0.73 -0.42 16 24 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.05 1.35 7.18 -2.38 -0.02 1.33 16 26 H 0.08 1.37 7.18 -2.39 -0.02 1.35 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.37 15.84 4.71 -92.70 -0.44 15.40 16 30 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.42 5.75 7.65 -92.71 -0.71 5.04 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.13 0.96 8.05 -2.38 -0.02 0.94 16 36 H 0.07 0.49 7.90 -2.39 -0.02 0.47 16 37 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -74.69 314.85 2.24 -72.45 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.16 Total: 22.78 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 4.46 Total: -5.26 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -3.91 Total: -116.94 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -74.69 2.24 -72.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.301 kcal (2) G-P(sol) polarization free energy of solvation -74.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds