Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.09002 * 115.54891 * 325.59434 * 18 16 15 20 20 C 1.52997 * 117.49716 * 111.25422 * 18 16 15 21 21 C 1.52993 * 117.50287 * 179.91380 * 18 16 15 22 22 H 1.08996 * 117.50239 * 0.03103 * 21 18 16 23 23 C 1.53006 * 117.49615 * 145.02172 * 21 18 16 24 24 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 28 28 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 32 32 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 33 33 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 34 34 H 1.09000 * 117.50325 * 214.98666 * 20 18 16 35 35 H 1.09004 * 117.50057 * 0.02562 * 20 18 16 36 36 H 1.09002 * 109.46831 * 60.00642 * 23 21 18 37 37 H 1.09005 * 109.46765 * 180.02562 * 23 21 18 38 38 H 1.08997 * 109.47226 * 300.00050 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 2.8842 -1.5863 -6.3775 12 1 0.9025 -0.5532 -7.3180 13 1 2.9751 0.6988 -7.1851 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 1.5860 1.4493 4.7791 20 6 0.5493 -0.2588 5.8166 21 6 2.0151 -0.1974 6.2533 22 1 2.5783 -1.1306 6.2604 23 6 2.3843 0.8044 7.3492 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7199 -1.2950 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8593 -2.3518 30 1 0.7072 1.9230 -5.4823 31 1 1.6054 -1.7197 1.2953 32 1 3.1263 -0.7993 1.2057 33 1 1.1483 0.8592 2.3518 34 1 -0.1515 0.4145 6.3103 35 1 0.1480 -1.2328 5.5366 36 1 1.5300 1.4495 7.5545 37 1 2.6596 0.2659 8.2560 38 1 3.2267 1.4115 7.0177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753625575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = -21.325567 kcal Electronic energy + Delta-G solvation = -16710.343937 eV Core-core repulsion = 13974.197933 eV Total energy + Delta-G solvation = -2736.146004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07309 -37.48000 -36.40606 -34.33641 -32.46567 -30.10625 -29.04692 -26.71401 -25.56795 -23.73343 -22.23932 -21.03567 -20.39547 -19.61027 -17.63248 -16.90211 -16.06873 -15.44898 -14.95989 -14.55588 -14.33583 -14.03471 -13.56840 -13.51776 -13.14632 -12.90232 -12.63841 -12.33034 -12.26364 -12.05649 -11.68511 -11.06510 -10.92271 -10.71423 -10.62897 -10.56633 -10.41152 -10.33674 -10.04694 -9.82099 -9.65070 -9.01140 -8.88269 -6.92360 -5.77410 -3.05722 2.44753 3.11218 3.43483 3.49437 3.51562 3.59941 4.45354 4.50629 4.57096 4.59765 4.93835 5.03275 5.07081 5.22595 5.36107 5.39353 5.42663 5.45997 5.57760 5.68160 5.75187 5.81987 5.96880 6.00164 6.04114 6.11610 6.25367 6.39357 6.50625 6.65270 6.77438 6.86941 7.51418 7.70962 8.22290 8.41866 9.53156 10.10457 10.45302 11.45732 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069911 B = 0.003425 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.414720 B = 8173.213231 C = 8319.007143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.539 3.461 17 O -0.545 6.545 18 C -0.191 4.191 19 H 0.123 0.877 20 C -0.149 4.149 21 C -0.123 4.123 22 H 0.117 0.883 23 C -0.124 4.124 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 0.242 21.576 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.371 5.371 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.212 4.212 19 H 0.141 0.859 20 C -0.187 4.187 21 C -0.142 4.142 22 H 0.135 0.865 23 C -0.181 4.181 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.683 -0.618 21.495 21.514 hybrid contribution -0.194 0.487 -1.181 1.293 sum -0.877 -0.130 20.313 20.333 Atomic orbital electron populations 1.21788 0.94653 1.01924 1.01490 1.21554 0.96731 1.00492 0.94179 0.90539 1.20575 0.96604 0.94216 0.85379 1.42353 1.66805 1.27787 1.00624 1.19292 1.28544 1.05369 0.83677 0.91094 1.24741 1.01076 0.97403 0.97888 1.69669 1.43745 1.16554 1.28384 0.86103 0.77607 0.77828 0.84591 1.20536 1.21875 1.21873 1.21423 1.00117 0.95262 0.82951 1.45997 1.57409 1.27958 1.05776 1.19645 0.78961 0.84990 0.83874 1.90690 1.40174 1.24738 1.86712 1.22324 1.08033 1.00149 0.90743 0.85942 1.23108 0.92062 1.02480 1.01035 1.22381 0.97622 1.01470 0.92739 0.86512 1.21404 1.01611 0.97928 0.97124 0.91149 0.92844 0.93884 0.95991 0.96132 0.78210 0.93584 0.91409 0.91383 0.76433 0.87819 0.88278 0.92361 0.91714 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 5 N -0.73 -18.43 5.33 -59.91 -0.32 -18.75 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 10 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.13 1.79 5.06 -4.05 -0.02 1.77 16 15 N -0.72 -8.70 5.28 -60.30 -0.32 -9.02 16 16 C 0.54 7.07 7.61 -10.99 -0.08 6.99 16 17 O -0.55 -9.29 16.26 5.56 0.09 -9.20 16 18 C -0.19 -1.81 5.91 -91.78 -0.54 -2.36 16 19 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 20 C -0.15 -1.21 9.88 -26.70 -0.26 -1.48 16 21 C -0.12 -1.10 5.92 -90.59 -0.54 -1.64 16 22 H 0.12 1.24 7.67 -51.93 -0.40 0.85 16 23 C -0.12 -0.81 10.19 37.16 0.38 -0.44 16 24 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.52 7.18 -51.93 -0.37 0.14 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.38 10.04 6.85 -40.82 -0.28 9.76 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.40 3.91 7.65 -40.82 -0.31 3.60 16 34 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -32.48 317.96 -7.62 -40.10 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.34 Total: 7.13 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.23 Total: -5.06 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.09 Total: -55.27 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.48 -7.62 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.772 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds