Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.09002 * 115.54891 * 325.59434 * 18 16 15 20 20 C 1.52997 * 117.49716 * 111.25422 * 18 16 15 21 21 C 1.52993 * 117.50287 * 179.91380 * 18 16 15 22 22 H 1.08996 * 117.50239 * 0.03103 * 21 18 16 23 23 C 1.53006 * 117.49615 * 145.02172 * 21 18 16 24 24 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 28 28 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 32 32 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 33 33 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 34 34 H 1.09000 * 117.50325 * 214.98666 * 20 18 16 35 35 H 1.09004 * 117.50057 * 0.02562 * 20 18 16 36 36 H 1.09002 * 109.46831 * 60.00642 * 23 21 18 37 37 H 1.09005 * 109.46765 * 180.02562 * 23 21 18 38 38 H 1.08997 * 109.47226 * 300.00050 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 2.8842 -1.5863 -6.3775 12 1 0.9025 -0.5532 -7.3180 13 1 2.9751 0.6988 -7.1851 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 1.5860 1.4493 4.7791 20 6 0.5493 -0.2588 5.8166 21 6 2.0151 -0.1974 6.2533 22 1 2.5783 -1.1306 6.2604 23 6 2.3843 0.8044 7.3492 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7199 -1.2950 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8593 -2.3518 30 1 0.7072 1.9230 -5.4823 31 1 1.6054 -1.7197 1.2953 32 1 3.1263 -0.7993 1.2057 33 1 1.1483 0.8592 2.3518 34 1 -0.1515 0.4145 6.3103 35 1 0.1480 -1.2328 5.5366 36 1 1.5300 1.4495 7.5545 37 1 2.6596 0.2659 8.2560 38 1 3.2267 1.4115 7.0177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753625575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = -43.128996 kcal Electronic energy + Delta-G solvation = -16711.289404 eV Core-core repulsion = 13974.197933 eV Total energy + Delta-G solvation = -2737.091472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07630 -38.58876 -37.53580 -35.95133 -34.10223 -31.93785 -29.68999 -27.88102 -27.25316 -25.07208 -23.73850 -21.80761 -21.53631 -20.76389 -19.23077 -18.30163 -17.28877 -16.57165 -16.52483 -15.85341 -15.54998 -15.44339 -14.98342 -14.74049 -14.17031 -14.06596 -13.75354 -13.58590 -13.58299 -12.97213 -12.89747 -12.83757 -12.30859 -12.20625 -12.13689 -12.01428 -11.72604 -11.67788 -11.32415 -11.05811 -10.96688 -10.79790 -10.11739 -9.00838 -7.96775 -5.25182 1.47368 1.47663 1.47786 1.58060 2.12268 2.55864 2.87027 3.37057 3.69136 3.72090 3.80210 3.89129 3.94379 4.06825 4.22453 4.33795 4.43866 4.52631 4.67911 4.71802 4.80581 4.88980 4.92046 4.96285 5.03068 5.07993 5.10992 5.22916 5.31850 5.39177 5.44057 5.48110 5.49164 6.26259 6.54623 7.22838 7.32986 8.07591 8.32308 9.26925 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069911 B = 0.003425 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.414720 B = 8173.213231 C = 8319.007143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.137 3.863 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.592 6.592 18 C -0.195 4.195 19 H 0.150 0.850 20 C -0.136 4.136 21 C -0.131 4.131 22 H 0.091 0.909 23 C -0.119 4.119 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.377 0.623 30 H 0.252 0.748 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.415 0.585 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 0.802 22.814 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.013 3.987 15 N -0.361 5.361 16 C 0.322 3.678 17 O -0.473 6.473 18 C -0.216 4.216 19 H 0.168 0.832 20 C -0.173 4.173 21 C -0.150 4.150 22 H 0.109 0.891 23 C -0.176 4.176 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.210 0.790 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.253 0.747 34 H 0.151 0.849 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.122 -0.058 22.757 22.785 hybrid contribution -0.040 0.261 -1.510 1.532 sum -1.162 0.204 21.248 21.280 Atomic orbital electron populations 1.21721 0.93772 1.01907 1.01822 1.21330 0.97246 1.00039 0.92649 0.90253 1.20721 0.96478 0.94150 0.85704 1.42516 1.66688 1.27921 1.01355 1.19663 1.27838 1.05261 0.85084 0.90900 1.25549 1.01700 0.97870 1.01535 1.69810 1.45162 1.17773 1.29100 0.85076 0.77131 0.77600 0.79962 1.19279 1.21889 1.21901 1.21126 0.99381 0.95038 0.83167 1.45864 1.57161 1.28170 1.04946 1.20319 0.77965 0.84579 0.84892 1.90671 1.42286 1.26933 1.87374 1.22371 1.09192 1.01003 0.89058 0.83234 1.23212 0.91953 1.02362 0.99760 1.22423 0.98210 1.01144 0.93207 0.89086 1.21399 1.02309 0.97518 0.96334 0.93794 0.93049 0.90482 0.96126 0.96346 0.79038 0.93915 0.92032 0.92381 0.74735 0.84905 0.89458 0.90621 0.91157 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.94 71.98 0.64 -3.20 16 2 C -0.09 -2.83 2.46 -10.79 -0.03 -2.86 16 3 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 4 C 0.16 6.27 5.65 86.38 0.49 6.76 16 5 N -0.74 -37.63 5.33 -343.46 -1.83 -39.46 16 6 C -0.25 -13.92 9.99 84.03 0.84 -13.09 16 7 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 8 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 9 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 10 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 14 C 0.14 3.78 5.06 86.38 0.44 4.22 16 15 N -0.71 -15.95 5.28 -463.08 -2.45 -18.40 16 16 C 0.53 13.43 7.61 87.66 0.67 14.10 16 17 O -0.59 -20.28 16.26 -3.03 -0.05 -20.33 16 18 C -0.20 -3.27 5.91 -11.54 -0.07 -3.34 16 19 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 20 C -0.14 -1.87 9.88 30.62 0.30 -1.56 16 21 C -0.13 -2.14 5.92 -10.77 -0.06 -2.21 16 22 H 0.09 1.97 7.67 -2.39 -0.02 1.95 16 23 C -0.12 -1.28 10.19 71.98 0.73 -0.54 16 24 H 0.04 1.50 7.18 -2.39 -0.02 1.48 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.65 7.18 -2.39 -0.02 1.64 16 27 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.38 19.96 6.85 -92.71 -0.64 19.33 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 6.96 7.65 -92.71 -0.71 6.25 16 34 H 0.13 1.08 8.05 -2.39 -0.02 1.06 16 35 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.07 0.56 7.90 -2.39 -0.02 0.55 16 37 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.20 317.96 2.10 -68.10 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.30 Total: 25.88 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 4.42 Total: -5.52 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.99 Total: -116.52 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -70.20 2.10 -68.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.970 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds