Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00336 * 2 1 4 4 N 1.34775 * 120.00178 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00011 * 180.02562 * 4 2 1 6 6 C 1.53520 * 114.16840 * 204.99637 * 5 4 2 7 7 N 1.47479 * 87.93317 * 220.32578 * 6 5 4 8 8 C 1.46894 * 110.99897 * 138.70082 * 7 6 5 9 9 H 1.08996 * 109.47229 * 57.22763 * 8 7 6 10 10 C 1.53002 * 109.47438 * 297.22627 * 8 7 6 11 11 C 1.53006 * 109.47284 * 177.22553 * 8 7 6 12 12 C 1.52990 * 109.47119 * 295.00409 * 11 8 7 13 13 C 1.50703 * 109.47186 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99929 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99603 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00137 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46936 * 90.00571 * 17 15 13 19 19 H 1.48510 * 109.47031 * 210.00219 * 17 15 13 20 20 H 1.48499 * 109.47232 * 329.99854 * 17 15 13 21 21 C 1.47483 * 87.83559 * 27.01171 * 7 6 5 22 22 H 1.09002 * 109.46936 * 270.00017 * 1 2 3 23 23 H 1.09000 * 109.47090 * 29.99782 * 1 2 3 24 24 H 1.08998 * 109.47202 * 150.00114 * 1 2 3 25 25 H 0.96997 * 120.00062 * 359.97438 * 4 2 1 26 26 H 1.09000 * 113.25880 * 337.94443 * 5 4 2 27 27 H 1.08998 * 113.47110 * 105.56173 * 6 5 4 28 28 H 1.08996 * 113.53014 * 335.10427 * 6 5 4 29 29 H 1.09000 * 109.47389 * 290.11531 * 10 8 7 30 30 H 1.09004 * 109.46827 * 50.11870 * 10 8 7 31 31 H 1.09006 * 109.46807 * 170.11298 * 10 8 7 32 32 H 1.09002 * 109.46730 * 55.00654 * 11 8 7 33 33 H 1.08998 * 109.47297 * 175.00013 * 11 8 7 34 34 H 1.09002 * 109.47520 * 299.99762 * 12 11 8 35 35 H 1.09004 * 109.47275 * 60.00037 * 12 11 8 36 36 H 0.97001 * 119.99926 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47860 * 87.75603 * 21 7 6 38 38 H 1.09000 * 113.47738 * 218.22106 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.2747 -2.4361 -0.5924 7 7 5.2776 -2.3789 0.4873 8 6 5.5486 -3.7186 1.0256 9 1 5.8809 -4.3734 0.2201 10 6 4.2718 -4.2854 1.6497 11 6 6.6412 -3.6280 2.0929 12 6 7.9521 -3.1798 1.4439 13 6 9.0281 -3.0900 2.4952 14 1 8.7996 -3.3284 3.5235 15 6 10.3040 -2.7025 2.1444 16 7 11.2431 -2.6246 3.0619 17 14 10.6990 -2.2894 0.3661 18 1 10.4621 -0.8427 0.1296 19 1 12.1221 -2.6100 0.0878 20 1 9.8270 -3.0874 -0.5329 21 6 4.2740 -1.6735 1.3061 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6959 -2.0072 -0.0005 26 1 4.0764 -0.2387 -0.3752 27 1 4.6975 -2.2879 -1.5860 28 1 3.6258 -3.3102 -0.5366 29 1 4.0369 -3.7344 2.5604 30 1 3.4476 -4.1876 0.9431 31 1 4.4213 -5.3380 1.8901 32 1 6.3467 -2.9053 2.8539 33 1 6.7800 -4.6056 2.5546 34 1 8.2466 -3.9025 0.6829 35 1 7.8133 -2.2021 0.9822 36 1 12.1408 -2.3523 2.8151 37 1 3.6243 -2.3435 1.8692 38 1 4.6963 -0.8791 1.9214 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = -3.144942 kcal Electronic energy + Delta-G solvation = -17395.337922 eV Core-core repulsion = 14659.980289 eV Total energy + Delta-G solvation = -2735.357633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92632 -39.17362 -35.19581 -33.59309 -32.29920 -30.26409 -29.59266 -26.65159 -25.96132 -25.11493 -21.58370 -20.86395 -20.24254 -18.98800 -17.11052 -17.05975 -16.51822 -15.72958 -15.17096 -14.88723 -14.40202 -14.09131 -13.64501 -13.43901 -12.99496 -12.96669 -12.61373 -12.53270 -12.37387 -12.00385 -11.59986 -11.30130 -11.24084 -10.96989 -10.69013 -10.37577 -10.12960 -9.88106 -9.63640 -9.49220 -9.18267 -9.02779 -8.56587 -8.39850 -5.94040 -3.90512 2.42197 2.96953 3.41582 3.47494 3.53627 4.15269 4.42793 4.56692 4.58190 4.80409 4.89640 5.03545 5.08382 5.11391 5.19691 5.36392 5.41724 5.47020 5.49614 5.63763 5.73561 5.89484 5.98745 6.07341 6.15051 6.31006 6.40456 6.50858 6.79173 7.05083 7.22349 7.31078 7.49874 7.68000 7.93576 8.02136 8.65262 9.11377 9.70007 11.19764 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033836 B = 0.004946 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.310875 B = 5659.879302 C = 6012.335913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.544 6.544 4 N -0.720 5.720 5 C 0.115 3.885 6 C -0.017 4.017 7 N -0.446 5.446 8 C 0.043 3.957 9 H 0.080 0.920 10 C -0.184 4.184 11 C -0.087 4.087 12 C -0.008 4.008 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.064 3.936 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.265 1.265 21 C -0.027 4.027 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.399 0.601 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.009 0.991 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.086 0.914 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.090 -1.104 -7.525 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.421 6.421 4 N -0.372 5.372 5 C 0.009 3.991 6 C -0.147 4.147 7 N -0.168 5.168 8 C -0.066 4.066 9 H 0.098 0.902 10 C -0.242 4.242 11 C -0.125 4.125 12 C -0.045 4.045 13 C -0.556 4.556 14 H 0.086 0.914 15 C -0.136 4.136 16 N -0.549 5.549 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.190 1.190 21 C -0.157 4.157 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.233 0.767 26 H 0.145 0.855 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.770 -0.035 -7.610 23.062 hybrid contribution -0.574 -0.759 -0.613 1.132 sum -22.344 -0.794 -8.223 23.822 Atomic orbital electron populations 1.21892 0.91803 1.04782 1.04774 1.20854 0.90564 0.83646 0.75285 1.90752 1.70778 1.31390 1.49131 1.46090 1.07120 1.08628 1.75340 1.22710 0.78776 1.00102 0.97463 1.24308 0.94660 0.96653 0.99066 1.69223 1.27358 1.15242 1.05000 1.22350 0.95570 0.89824 0.98830 0.90215 1.22532 0.98520 1.01971 1.01151 1.21409 0.94739 1.00566 0.95806 1.19488 0.92176 0.96625 0.96228 1.21229 0.93455 1.45204 0.95696 0.91411 1.25026 0.96337 0.95044 0.97212 1.69932 1.02625 1.49022 1.33279 0.86734 0.76989 0.79262 0.86018 1.20281 1.21740 1.19008 1.24602 0.94461 0.99529 0.97103 0.88847 0.88908 0.90284 0.76661 0.85547 0.89281 0.90924 0.91805 0.93067 0.91847 0.92865 0.92636 0.97294 0.95594 0.92932 0.89650 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.30 36.00 0.37 -0.63 16 2 C 0.51 5.34 7.94 -10.99 -0.09 5.26 16 3 O -0.54 -8.53 16.69 5.55 0.09 -8.44 16 4 N -0.72 -6.45 5.39 -53.53 -0.29 -6.74 16 5 C 0.11 1.37 4.60 -67.71 -0.31 1.05 16 6 C -0.02 -0.20 7.30 -7.54 -0.06 -0.25 16 7 N -0.45 -6.86 5.80 -236.59 -1.37 -8.23 16 8 C 0.04 0.67 2.41 -67.71 -0.16 0.51 16 9 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 10 C -0.18 -2.15 7.72 37.16 0.29 -1.86 16 11 C -0.09 -1.74 4.75 -26.73 -0.13 -1.87 16 12 C -0.01 -0.19 3.93 -27.89 -0.11 -0.30 16 13 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 14 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 15 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -29.00 13.96 55.43 0.77 -28.23 16 17 Si 0.88 22.86 27.47 -169.99 -4.67 18.19 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 21 C -0.03 -0.36 7.07 -7.54 -0.05 -0.42 16 22 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.40 2.29 8.75 -40.82 -0.36 1.93 16 26 H 0.13 1.80 7.45 -51.93 -0.39 1.42 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.68 5.97 -51.93 -0.31 0.37 16 29 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 30 H 0.05 0.48 5.84 -51.93 -0.30 0.18 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 35 H 0.03 0.66 7.18 -51.93 -0.37 0.29 16 36 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.09 0.99 4.83 -51.93 -0.25 0.74 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -35.21 304.44 -7.63 -42.84 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.08 Total: -1.67 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.68 Total: -12.32 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.89 Total: -43.20 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.67 Total: 18.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.21 -7.63 -42.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.697 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds