Wall clock time and date at job start Sun Mar 29 2020 22:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00336 * 2 1 4 4 N 1.34775 * 120.00178 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00011 * 180.02562 * 4 2 1 6 6 C 1.53520 * 114.16840 * 204.99637 * 5 4 2 7 7 N 1.47479 * 87.93317 * 220.32578 * 6 5 4 8 8 C 1.46894 * 110.99897 * 138.70082 * 7 6 5 9 9 H 1.08996 * 109.47229 * 57.22763 * 8 7 6 10 10 C 1.53002 * 109.47438 * 297.22627 * 8 7 6 11 11 C 1.53006 * 109.47284 * 177.22553 * 8 7 6 12 12 C 1.52990 * 109.47119 * 295.00409 * 11 8 7 13 13 C 1.50703 * 109.47186 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99929 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99603 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00137 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46936 * 90.00571 * 17 15 13 19 19 H 1.48510 * 109.47031 * 210.00219 * 17 15 13 20 20 H 1.48499 * 109.47232 * 329.99854 * 17 15 13 21 21 C 1.47483 * 87.83559 * 27.01171 * 7 6 5 22 22 H 1.09002 * 109.46936 * 270.00017 * 1 2 3 23 23 H 1.09000 * 109.47090 * 29.99782 * 1 2 3 24 24 H 1.08998 * 109.47202 * 150.00114 * 1 2 3 25 25 H 0.96997 * 120.00062 * 359.97438 * 4 2 1 26 26 H 1.09000 * 113.25880 * 337.94443 * 5 4 2 27 27 H 1.08998 * 113.47110 * 105.56173 * 6 5 4 28 28 H 1.08996 * 113.53014 * 335.10427 * 6 5 4 29 29 H 1.09000 * 109.47389 * 290.11531 * 10 8 7 30 30 H 1.09004 * 109.46827 * 50.11870 * 10 8 7 31 31 H 1.09006 * 109.46807 * 170.11298 * 10 8 7 32 32 H 1.09002 * 109.46730 * 55.00654 * 11 8 7 33 33 H 1.08998 * 109.47297 * 175.00013 * 11 8 7 34 34 H 1.09002 * 109.47520 * 299.99762 * 12 11 8 35 35 H 1.09004 * 109.47275 * 60.00037 * 12 11 8 36 36 H 0.97001 * 119.99926 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47860 * 87.75603 * 21 7 6 38 38 H 1.09000 * 113.47738 * 218.22106 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.2747 -2.4361 -0.5924 7 7 5.2776 -2.3789 0.4873 8 6 5.5486 -3.7186 1.0256 9 1 5.8809 -4.3734 0.2201 10 6 4.2718 -4.2854 1.6497 11 6 6.6412 -3.6280 2.0929 12 6 7.9521 -3.1798 1.4439 13 6 9.0281 -3.0900 2.4952 14 1 8.7996 -3.3284 3.5235 15 6 10.3040 -2.7025 2.1444 16 7 11.2431 -2.6246 3.0619 17 14 10.6990 -2.2894 0.3661 18 1 10.4621 -0.8427 0.1296 19 1 12.1221 -2.6100 0.0878 20 1 9.8270 -3.0874 -0.5329 21 6 4.2740 -1.6735 1.3061 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6959 -2.0072 -0.0005 26 1 4.0764 -0.2387 -0.3752 27 1 4.6975 -2.2879 -1.5860 28 1 3.6258 -3.3102 -0.5366 29 1 4.0369 -3.7344 2.5604 30 1 3.4476 -4.1876 0.9431 31 1 4.4213 -5.3380 1.8901 32 1 6.3467 -2.9053 2.8539 33 1 6.7800 -4.6056 2.5546 34 1 8.2466 -3.9025 0.6829 35 1 7.8133 -2.2021 0.9822 36 1 12.1408 -2.3523 2.8151 37 1 3.6243 -2.3435 1.8692 38 1 4.6963 -0.8791 1.9214 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:03 Heat of formation + Delta-G solvation = -31.438548 kcal Electronic energy + Delta-G solvation = -17396.564825 eV Core-core repulsion = 14659.980289 eV Total energy + Delta-G solvation = -2736.584536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.94016 -40.10209 -36.55285 -35.09126 -34.00286 -31.67069 -30.49863 -27.71487 -27.08719 -26.72462 -23.05420 -21.93937 -21.59710 -20.12940 -18.85881 -18.01256 -17.86767 -16.73366 -16.37958 -16.05236 -15.86746 -15.43505 -14.77366 -14.67407 -14.48552 -14.25424 -13.92153 -13.51267 -13.28806 -13.15835 -12.93670 -12.78578 -12.48308 -12.24997 -12.02432 -11.80588 -11.76504 -11.49644 -11.35028 -11.10143 -10.98702 -10.75030 -10.06751 -9.62766 -8.29384 -6.31737 1.34836 1.36642 1.49409 1.62827 2.20531 2.36810 3.06849 3.14186 3.47262 3.83599 3.89726 3.92990 4.14132 4.20829 4.32557 4.45991 4.53964 4.65883 4.67587 4.70402 4.76099 4.85696 4.88206 4.92708 5.06229 5.14631 5.20753 5.31969 5.43735 5.48494 5.61250 5.68861 5.73145 6.17854 6.30734 6.59698 6.76665 7.29425 7.32868 8.87818 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033836 B = 0.004946 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.310875 B = 5659.879302 C = 6012.335913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.606 6.606 4 N -0.702 5.702 5 C 0.122 3.878 6 C -0.002 4.002 7 N -0.487 5.487 8 C 0.050 3.950 9 H 0.082 0.918 10 C -0.176 4.176 11 C -0.083 4.083 12 C 0.000 4.000 13 C -0.531 4.531 14 H 0.028 0.972 15 C 0.002 3.998 16 N -0.955 5.955 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.247 1.247 21 C -0.026 4.026 22 H 0.109 0.891 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.420 0.580 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.012 0.988 35 H 0.019 0.981 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.818 -2.398 -9.621 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.292 3.708 3 O -0.487 6.487 4 N -0.355 5.355 5 C 0.015 3.985 6 C -0.131 4.131 7 N -0.210 5.210 8 C -0.059 4.059 9 H 0.100 0.900 10 C -0.234 4.234 11 C -0.121 4.121 12 C -0.038 4.038 13 C -0.569 4.569 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.596 5.596 17 Si 0.777 3.223 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.156 4.156 22 H 0.127 0.873 23 H 0.109 0.891 24 H 0.131 0.869 25 H 0.258 0.742 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.544 -1.383 -9.707 26.430 hybrid contribution 0.290 -0.358 0.149 0.484 sum -24.254 -1.741 -9.558 26.127 Atomic orbital electron populations 1.21903 0.87634 1.06393 1.06235 1.21781 0.92506 0.82838 0.73676 1.90733 1.72337 1.33613 1.52003 1.45912 1.05808 1.09496 1.74304 1.22302 0.80504 0.99169 0.96501 1.24297 0.93765 0.97245 0.97782 1.69139 1.29664 1.15404 1.06817 1.22166 0.95823 0.90468 0.97435 0.89959 1.22436 0.97300 1.02062 1.01571 1.21283 0.94293 0.99680 0.96807 1.19379 0.93087 0.96375 0.94936 1.21636 0.95224 1.44775 0.95307 0.95349 1.26017 0.96161 0.94914 1.02314 1.70079 1.03287 1.50341 1.35885 0.85609 0.77353 0.79274 0.80061 1.19794 1.20777 1.17098 1.24635 0.94428 0.99084 0.97423 0.87267 0.89128 0.86864 0.74164 0.88649 0.89222 0.87583 0.92008 0.89739 0.90996 0.94367 0.92812 0.97004 0.96280 0.92606 0.87285 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.30 71.23 0.73 -0.62 16 2 C 0.50 9.69 7.94 87.66 0.70 10.39 16 3 O -0.61 -19.20 16.69 -3.05 -0.05 -19.25 16 4 N -0.70 -10.66 5.39 -441.67 -2.38 -13.04 16 5 C 0.12 2.73 4.60 45.45 0.21 2.94 16 6 C 0.00 -0.04 7.30 83.58 0.61 0.57 16 7 N -0.49 -14.26 5.80 -902.44 -5.23 -19.49 16 8 C 0.05 1.44 2.41 44.92 0.11 1.55 16 9 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 10 C -0.18 -3.45 7.72 71.98 0.56 -2.90 16 11 C -0.08 -3.29 4.75 30.59 0.15 -3.15 16 12 C 0.00 -0.02 3.93 29.85 0.12 0.10 16 13 C -0.53 -32.42 9.66 25.60 0.25 -32.17 16 14 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 15 C 0.00 0.12 5.47 84.65 0.46 0.59 16 16 N -0.95 -62.57 13.96 21.45 0.30 -62.27 16 17 Si 0.95 47.41 27.47 68.60 1.88 49.29 16 18 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 21 C -0.03 -0.67 7.07 83.58 0.59 -0.07 16 22 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.42 2.86 8.75 -92.71 -0.81 2.05 16 26 H 0.10 2.79 7.45 -2.39 -0.02 2.77 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.11 1.41 5.97 -2.39 -0.01 1.40 16 29 H 0.06 1.26 6.51 -2.39 -0.02 1.24 16 30 H 0.08 1.11 5.84 -2.39 -0.01 1.10 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 35 H 0.02 0.97 7.18 -2.38 -0.02 0.95 16 36 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 37 H 0.11 2.23 4.83 -2.38 -0.01 2.22 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -80.87 304.44 -0.82 -81.70 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.18 Total: 5.84 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 4.48 Total: -22.77 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -7.31 Total: -94.80 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.88 Total: 49.29 kcal Total: -80.87 -0.82 -81.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.258 kcal (2) G-P(sol) polarization free energy of solvation -80.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds