Wall clock time and date at job start Sun Mar 29 2020 22:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47216 * 2 1 4 4 C 1.50708 * 109.46645 * 240.00249 * 2 1 3 5 5 H 1.07992 * 119.99970 * 239.99621 * 4 2 1 6 6 C 1.37876 * 119.99761 * 60.00054 * 4 2 1 7 7 N 1.31520 * 120.00405 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00044 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46851 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47223 * 119.99900 * 8 6 4 11 11 H 1.48499 * 109.46795 * 240.00336 * 8 6 4 12 12 O 1.45202 * 109.47329 * 120.00860 * 2 1 3 13 13 C 1.34229 * 116.99276 * 269.99523 * 12 2 1 14 14 O 1.20823 * 120.00479 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99338 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46856 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.43411 * 56.08710 * 16 15 13 18 18 C 1.54861 * 110.49205 * 178.75487 * 16 15 13 19 19 C 1.54480 * 101.66110 * 93.87823 * 18 16 15 20 20 N 1.46760 * 105.54782 * 25.43666 * 19 18 16 21 21 C 1.34415 * 111.30303 * 342.93897 * 20 19 18 22 22 O 1.21288 * 124.94382 * 180.42984 * 21 20 19 23 23 H 1.09000 * 109.46857 * 299.99545 * 1 2 3 24 24 H 1.09002 * 109.47405 * 59.99264 * 1 2 3 25 25 H 1.09001 * 109.47470 * 180.02562 * 1 2 3 26 26 H 0.96991 * 120.00132 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47099 * 60.00368 * 15 13 12 28 28 H 1.08995 * 109.47442 * 299.99968 * 15 13 12 29 29 H 1.08997 * 111.03764 * 335.78554 * 18 16 15 30 30 H 1.09000 * 110.99735 * 211.95449 * 18 16 15 31 31 H 1.09002 * 110.24746 * 266.39097 * 19 18 16 32 32 H 1.09002 * 110.24236 * 144.47820 * 19 18 16 33 33 H 0.97010 * 124.34794 * 162.95909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3221 -1.1193 -4.0082 9 1 3.1480 -2.2854 -3.6041 10 1 1.1674 -1.5863 -4.8166 11 1 3.1469 -0.1855 -4.8162 12 8 2.0140 -0.6847 1.1854 13 6 2.2172 0.0638 2.2810 14 8 1.9984 1.2517 2.2503 15 6 2.7184 -0.5776 3.5493 16 6 2.8626 0.4884 4.6373 17 1 1.9172 1.0098 4.7869 18 6 3.3472 -0.1510 5.9619 19 6 4.8767 0.0406 5.8599 20 7 5.0702 1.1983 4.9790 21 6 3.9567 1.4688 4.2763 22 8 3.8454 2.3679 3.4698 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.7087 1.1616 -3.4843 27 1 3.6872 -1.0412 3.3637 28 1 2.0089 -1.3372 3.8773 29 1 3.0885 -1.2090 6.0033 30 1 2.9439 0.3816 6.8232 31 1 5.3397 -0.8454 5.4256 32 1 5.2981 0.2415 6.8449 33 1 5.8958 1.7033 4.9121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892691663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:21 Heat of formation + Delta-G solvation = -129.056763 kcal Electronic energy + Delta-G solvation = -17564.315193 eV Core-core repulsion = 14589.945857 eV Total energy + Delta-G solvation = -2974.369336 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54140 -39.02643 -36.25626 -35.60111 -33.18124 -32.75190 -29.73052 -28.86525 -26.11255 -25.23680 -22.07294 -21.67864 -20.10479 -19.26839 -17.40228 -16.82430 -16.40194 -16.01370 -15.66033 -14.99280 -14.60127 -14.23294 -13.73137 -13.61946 -13.02473 -12.79193 -12.59986 -12.33803 -11.94795 -11.62601 -11.46186 -11.12147 -11.00546 -10.96172 -10.74051 -10.27681 -10.22514 -9.60421 -9.44797 -9.29480 -9.07746 -8.80179 -8.42327 -6.11628 -4.18229 2.79200 3.17687 3.27528 3.33670 3.37591 3.38975 3.68568 4.30341 4.34364 4.47937 4.60475 4.94025 5.07337 5.21164 5.28894 5.34722 5.52558 5.65301 5.68543 5.93953 5.99831 6.73687 6.87864 6.96437 7.01058 7.05701 7.29489 7.68009 7.82820 8.05217 8.23562 8.45139 8.75581 8.99692 9.47000 10.95974 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.041219 B = 0.005423 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.136345 B = 5162.425029 C = 5232.589267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.519 4.519 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.362 6.362 13 C 0.435 3.565 14 O -0.490 6.490 15 C -0.099 4.099 16 C -0.113 4.113 17 H 0.113 0.887 18 C -0.130 4.130 19 C 0.102 3.898 20 N -0.743 5.743 21 C 0.515 3.485 22 O -0.490 6.490 23 H 0.015 0.985 24 H 0.098 0.902 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -4.831 17.737 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.557 4.557 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.279 6.279 13 C 0.276 3.724 14 O -0.378 6.378 15 C -0.137 4.137 16 C -0.135 4.135 17 H 0.131 0.869 18 C -0.167 4.167 19 C -0.023 4.023 20 N -0.402 5.402 21 C 0.299 3.701 22 O -0.361 6.361 23 H 0.035 0.965 24 H 0.116 0.884 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.378 -3.916 17.078 18.328 hybrid contribution 0.629 -0.147 -0.837 1.057 sum 6.007 -4.063 16.241 17.787 Atomic orbital electron populations 1.22143 0.97673 0.99913 1.01357 1.20596 0.91280 0.94025 0.77864 0.93534 1.21073 1.32275 1.13329 0.88999 0.91385 1.24897 0.95016 0.95112 0.99056 1.69918 1.36242 1.22575 1.23963 0.86232 0.78599 0.79461 0.81906 1.19530 1.20733 1.20788 1.86449 1.76272 1.43712 1.21439 1.23201 0.76450 0.86412 0.86354 1.90735 1.46653 1.15996 1.84377 1.21163 1.04046 0.97993 0.90537 1.21829 1.00436 0.96358 0.94858 0.86877 1.22728 0.94448 1.02701 0.96851 1.22012 0.96862 0.89003 0.94444 1.46272 1.15493 1.33612 1.44810 1.20750 0.84213 0.84950 0.80204 1.90870 1.81724 1.31520 1.31995 0.96548 0.88352 0.94558 0.92517 0.88271 0.87160 0.88752 0.89630 0.91153 0.90517 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.33 37.16 0.35 -3.70 16 2 C 0.21 6.07 2.56 -27.88 -0.07 6.00 16 3 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 4 C -0.52 -15.16 8.90 -34.44 -0.31 -15.46 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -26.24 11.32 55.43 0.63 -25.61 16 8 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 O -0.36 -8.97 9.86 -39.26 -0.39 -9.36 16 13 C 0.43 9.45 7.71 36.01 0.28 9.72 16 14 O -0.49 -12.42 12.90 -26.14 -0.34 -12.76 16 15 C -0.10 -1.40 5.24 -27.88 -0.15 -1.54 16 16 C -0.11 -1.44 2.57 -90.51 -0.23 -1.67 16 17 H 0.11 1.54 8.02 -51.93 -0.42 1.13 16 18 C -0.13 -0.93 6.72 -24.97 -0.17 -1.10 16 19 C 0.10 0.70 7.77 -3.12 -0.02 0.68 16 20 N -0.74 -8.12 6.24 -59.20 -0.37 -8.49 16 21 C 0.51 8.20 7.39 -10.86 -0.08 8.12 16 22 O -0.49 -10.80 15.86 -16.69 -0.26 -11.07 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.09 0.47 7.91 -51.93 -0.41 0.06 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.41 3.88 8.96 -40.82 -0.37 3.51 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -36.75 281.78 -6.39 -43.14 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.38 Total: 0.52 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.50 Total: 2.70 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.26 Total: -34.10 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.99 Total: -33.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -36.75 -6.39 -43.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.915 kcal (2) G-P(sol) polarization free energy of solvation -36.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds