Wall clock time and date at job start Sun Mar 29 2020 22:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47224 * 2 1 4 4 C 1.50701 * 109.47455 * 239.99837 * 2 1 3 5 5 H 1.08007 * 119.99648 * 240.00309 * 4 2 1 6 6 C 1.37871 * 120.00149 * 59.99849 * 4 2 1 7 7 N 1.31516 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47138 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47319 * 119.99964 * 8 6 4 11 11 H 1.48494 * 109.47262 * 239.99910 * 8 6 4 12 12 C 1.50703 * 109.46972 * 119.99735 * 2 1 3 13 13 O 1.20824 * 120.00224 * 120.00389 * 12 2 1 14 14 O 1.34229 * 119.99765 * 299.99762 * 12 2 1 15 15 C 1.45201 * 116.99814 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47377 * 180.02562 * 15 14 12 17 17 O 1.21286 * 119.99450 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00116 * 180.02562 * 16 15 14 19 19 C 1.47066 * 136.05397 * 179.97438 * 18 16 15 20 20 C 1.53503 * 87.98596 * 152.84244 * 19 18 16 21 21 C 1.47060 * 136.06000 * 359.94777 * 18 16 15 22 22 H 1.08991 * 109.46843 * 300.00201 * 1 2 3 23 23 H 1.09000 * 109.47013 * 60.00235 * 1 2 3 24 24 H 1.09002 * 109.46763 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00005 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47100 * 60.00581 * 15 14 12 27 27 H 1.08998 * 109.47111 * 300.00451 * 15 14 12 28 28 H 1.09000 * 113.46827 * 267.61848 * 19 18 16 29 29 H 1.09003 * 113.47151 * 38.06638 * 19 18 16 30 30 H 1.08997 * 114.20730 * 139.65037 * 20 19 18 31 31 H 1.08995 * 114.20536 * 272.48261 * 20 19 18 32 32 H 1.09007 * 113.46761 * 321.93701 * 21 18 16 33 33 H 1.09003 * 113.46830 * 92.37669 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1457 -2.2878 -3.6036 10 1 1.1663 -1.5870 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2276 -0.9855 3.5897 16 6 1.7626 -0.3290 4.8640 17 8 1.0626 0.6603 4.8160 18 7 2.1255 -0.8405 6.0569 19 6 1.8886 -0.5051 7.4691 20 6 2.0834 -1.9916 7.7987 21 6 2.9320 -1.9800 6.5193 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7097 1.1616 -3.4845 26 1 3.3172 -0.9843 3.5567 27 1 1.8642 -2.0126 3.5570 28 1 2.6570 0.1386 7.8971 29 1 0.8787 -0.1456 7.6664 30 1 2.6519 -2.1766 8.7101 31 1 1.1741 -2.5883 7.7267 32 1 2.8094 -2.8747 5.9089 33 1 3.9781 -1.7287 6.6946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327506708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:04 Heat of formation + Delta-G solvation = -83.202430 kcal Electronic energy + Delta-G solvation = -17051.540559 eV Core-core repulsion = 14079.159616 eV Total energy + Delta-G solvation = -2972.380943 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48751 -39.55045 -37.75389 -35.60349 -33.87868 -30.96459 -30.44003 -27.83491 -26.14589 -25.18054 -23.18302 -22.16494 -19.83150 -19.21192 -17.21913 -16.82719 -16.68258 -16.09375 -15.86067 -15.76855 -15.01452 -14.25667 -14.02382 -13.25901 -13.03939 -12.92610 -12.72136 -12.56768 -12.01281 -11.85628 -11.51051 -11.08296 -11.04824 -10.77312 -10.67898 -10.34036 -10.18852 -10.05761 -9.80481 -9.17731 -9.01224 -8.94010 -8.44287 -6.08965 -4.14953 2.33596 2.57190 3.24732 3.30042 3.36933 3.42989 3.59089 3.98814 4.34868 4.44721 4.63297 4.80887 5.07578 5.10112 5.23654 5.25725 5.27064 5.30719 5.37740 5.53007 5.79138 6.04050 6.71075 6.90970 6.92323 7.14743 7.46078 7.47955 7.76394 7.95488 8.07977 8.15221 8.79047 8.93781 9.50447 10.98452 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.057980 B = 0.004556 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.809316 B = 6143.970986 C = 6499.211290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.467 3.533 13 O -0.518 6.518 14 O -0.342 6.342 15 C 0.052 3.948 16 C 0.545 3.455 17 O -0.512 6.512 18 N -0.655 5.655 19 C 0.106 3.894 20 C -0.155 4.155 21 C 0.096 3.904 22 H 0.026 0.974 23 H 0.097 0.903 24 H 0.031 0.969 25 H 0.263 0.737 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 -5.196 18.843 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.312 3.688 13 O -0.405 6.405 14 O -0.260 6.260 15 C -0.026 4.026 16 C 0.334 3.666 17 O -0.385 6.385 18 N -0.394 5.394 19 C -0.016 4.016 20 C -0.193 4.193 21 C -0.027 4.027 22 H 0.045 0.955 23 H 0.115 0.885 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.594 -4.735 18.406 19.182 hybrid contribution 0.525 -0.561 -0.739 1.066 sum 3.119 -5.296 17.667 18.706 Atomic orbital electron populations 1.21740 0.95411 1.00074 1.01996 1.18806 0.95047 0.97089 0.85059 0.91563 1.21168 1.31964 1.13263 0.88697 0.90545 1.24946 0.94907 0.95030 0.99145 1.69900 1.36466 1.22768 1.23779 0.86314 0.78632 0.79674 0.82130 1.19524 1.20881 1.20885 1.25570 0.76434 0.83222 0.83582 1.90493 1.36553 1.26793 1.86615 1.86734 1.69937 1.54840 1.14450 1.22327 1.00114 0.96215 0.83916 1.19884 0.80253 0.83627 0.82821 1.90758 1.36751 1.24949 1.86078 1.49592 1.52896 1.32074 1.04878 1.22926 1.02626 0.96781 0.79260 1.23400 1.01282 0.96637 0.97980 1.23072 0.96162 0.89556 0.93950 0.95468 0.88497 0.94999 0.92710 0.88894 0.88926 0.89733 0.90297 0.89044 0.88609 0.90042 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.90 37.16 0.33 -3.01 16 2 C 0.06 1.55 2.74 -92.92 -0.25 1.30 16 3 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 4 C -0.51 -14.59 8.37 -34.44 -0.29 -14.88 16 5 H 0.08 2.25 6.76 -52.48 -0.35 1.89 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.47 11.35 7.25 36.01 0.26 11.61 16 13 O -0.52 -13.13 15.21 -18.75 -0.29 -13.41 16 14 O -0.34 -7.49 9.66 -45.90 -0.44 -7.94 16 15 C 0.05 0.88 5.77 36.01 0.21 1.09 16 16 C 0.55 8.96 8.16 -10.99 -0.09 8.87 16 17 O -0.51 -10.63 17.28 -14.11 -0.24 -10.88 16 18 N -0.65 -7.68 3.69 -185.25 -0.68 -8.36 16 19 C 0.11 0.89 8.61 -8.51 -0.07 0.81 16 20 C -0.16 -0.84 8.49 -26.20 -0.22 -1.06 16 21 C 0.10 0.68 8.41 -8.50 -0.07 0.61 16 22 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 23 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 27 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 290.68 15.07 4.38 4.38 Total: -1.00 -34.10 290.68 -6.42 -40.51 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.45 Total: -3.24 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.29 Total: 6.94 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.06 Total: -32.95 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.97 Total: -32.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.10 -6.42 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327506708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.688 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds