Wall clock time and date at job start Sun Mar 29 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 115.55241 * 2 1 4 4 C 1.50697 * 109.47015 * 279.85419 * 3 2 1 5 5 O 1.21294 * 120.00214 * 355.51421 * 4 3 2 6 6 N 1.34779 * 120.00332 * 175.51028 * 4 3 2 7 7 C 1.37102 * 119.99804 * 0.02562 * 6 4 3 8 8 H 1.07996 * 119.99737 * 20.51422 * 7 6 4 9 9 C 1.38952 * 119.99934 * 200.51810 * 7 6 4 10 10 N 1.31411 * 120.00154 * 10.20066 * 9 7 6 11 11 Si 1.86799 * 119.99807 * 190.20543 * 9 7 6 12 12 H 1.48492 * 109.47344 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46909 * 119.99788 * 11 9 7 14 14 H 1.48496 * 109.47062 * 239.99749 * 11 9 7 15 15 C 1.46501 * 120.00122 * 180.02562 * 6 4 3 16 16 C 1.50703 * 109.46871 * 83.99080 * 15 6 4 17 17 O 1.20825 * 120.00370 * 0.02562 * 16 15 6 18 18 O 1.34230 * 119.99660 * 179.97438 * 16 15 6 19 19 C 1.53004 * 117.51748 * 145.69874 * 2 1 3 20 20 C 1.52993 * 59.99947 * 107.48145 * 19 2 1 21 21 H 1.09002 * 109.46939 * 64.46429 * 1 2 3 22 22 H 1.08997 * 109.47541 * 184.46743 * 1 2 3 23 23 H 1.09000 * 109.46988 * 304.46922 * 1 2 3 24 24 H 1.09004 * 109.47390 * 159.85703 * 3 2 1 25 25 H 1.09003 * 109.47757 * 39.85730 * 3 2 1 26 26 H 0.96999 * 120.00220 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47071 * 203.98928 * 15 6 4 28 28 H 1.08991 * 109.47184 * 323.98916 * 15 6 4 29 29 H 0.96702 * 116.99530 * 179.97438 * 18 16 15 30 30 H 1.08999 * 117.50327 * 214.97459 * 19 2 1 31 31 H 1.09000 * 117.49441 * 359.97438 * 19 2 1 32 32 H 1.09004 * 117.49664 * 252.50797 * 20 19 2 33 33 H 1.08997 * 117.50143 * 107.49449 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.1871 1.9383 -1.3998 5 8 1.7793 1.2630 -2.3212 6 7 2.6378 3.1879 -1.6281 7 6 3.0992 3.9511 -0.5868 8 1 3.4151 3.4777 0.3311 9 6 3.1603 5.3336 -0.7124 10 7 2.5948 5.9256 -1.7404 11 14 4.0464 6.3505 0.5799 12 1 4.5930 5.4517 1.6279 13 1 5.1577 7.1015 -0.0577 14 1 3.0926 7.3068 1.1968 15 6 2.6346 3.7305 -2.9889 16 6 1.2732 4.2965 -3.3008 17 8 0.3957 4.2517 -2.4713 18 8 1.0356 4.8514 -4.4997 19 6 2.2368 -1.1210 0.7647 20 6 2.2364 -1.1208 -0.7652 21 1 -0.3633 0.4430 -0.9273 22 1 -0.3634 -1.0245 0.0800 23 1 -0.3633 0.5816 0.8472 24 1 3.2171 1.2920 0.3539 25 1 1.6349 2.0485 0.6586 26 1 2.6378 6.8906 -1.8282 27 1 3.3827 4.5194 -3.0672 28 1 2.8688 2.9361 -3.6974 29 1 0.1471 5.2006 -4.6535 30 1 3.1720 -0.8751 1.2678 31 1 1.6118 -1.8584 1.2683 32 1 1.6112 -1.8584 -1.2684 33 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604568708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:38 Heat of formation + Delta-G solvation = -98.093109 kcal Electronic energy + Delta-G solvation = -18159.208913 eV Core-core repulsion = 15186.182262 eV Total energy + Delta-G solvation = -2973.026651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38758 -38.44974 -36.92075 -34.98800 -34.44460 -31.52521 -29.51928 -28.03682 -26.69797 -24.61421 -21.97444 -21.05957 -19.38499 -18.55491 -16.93730 -16.66611 -16.06672 -15.49854 -14.91958 -14.41823 -14.33721 -14.20342 -13.80927 -13.15775 -12.88641 -12.24528 -12.02685 -11.78300 -11.52077 -11.41011 -11.15785 -11.07550 -10.94614 -10.70230 -10.49734 -10.36319 -10.19090 -9.75024 -9.54065 -9.22422 -9.03698 -8.42147 -7.91561 -6.47163 -4.03588 3.07447 3.17257 3.20909 3.67548 3.78260 4.04110 4.20198 4.38343 4.83989 5.05642 5.18827 5.32821 5.43729 5.60751 5.98755 6.07193 6.14087 6.28587 6.35077 6.37937 6.43296 6.52502 6.59381 6.67553 6.69567 6.82492 6.84071 7.32797 7.62914 7.69365 8.26335 8.99737 9.25160 9.41455 9.82029 10.59666 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.009721 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.180545 B = 2879.689656 C = 3795.350690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.084 4.084 4 C 0.476 3.524 5 O -0.592 6.592 6 N -0.438 5.438 7 C -0.326 4.326 8 H 0.103 0.897 9 C 0.034 3.966 10 N -0.882 5.882 11 Si 0.931 3.069 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.282 1.282 15 C 0.159 3.841 16 C 0.502 3.498 17 O -0.515 6.515 18 O -0.536 6.536 19 C -0.189 4.189 20 C -0.151 4.151 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.272 0.728 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.388 0.612 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.902 -4.917 1.601 5.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.124 4.124 4 C 0.266 3.734 5 O -0.477 6.477 6 N -0.158 5.158 7 C -0.454 4.454 8 H 0.120 0.880 9 C -0.169 4.169 10 N -0.522 5.522 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.208 1.208 15 C 0.033 3.967 16 C 0.343 3.657 17 O -0.401 6.401 18 O -0.347 6.347 19 C -0.226 4.226 20 C -0.188 4.188 21 H 0.085 0.915 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.851 -5.213 1.399 5.464 hybrid contribution -0.252 1.190 0.600 1.356 sum 0.599 -4.024 2.000 4.533 Atomic orbital electron populations 1.21239 0.92459 1.00574 1.02280 1.21087 0.94600 0.90354 1.04106 1.20941 1.01001 0.94062 0.96388 1.20211 0.79843 0.82878 0.90471 1.90528 1.50903 1.60705 1.45562 1.43406 1.54816 1.11820 1.05781 1.19711 1.40995 0.88765 0.95916 0.87982 1.25272 0.96653 0.97098 0.97914 1.69697 1.41592 1.10810 1.30114 0.85796 0.78778 0.79593 0.80072 1.19248 1.20559 1.20763 1.20428 0.92373 0.98593 0.85259 1.23750 0.91173 0.73276 0.77514 1.90542 1.47038 1.55160 1.47380 1.84534 1.38797 1.72713 1.38617 1.23151 1.02249 1.01940 0.95249 1.22747 1.02454 1.01029 0.92607 0.91539 0.93394 0.92786 0.90249 0.89207 0.91770 0.85453 0.90631 0.75576 0.89274 0.89463 0.89558 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.71 37.15 0.36 -1.49 16 2 C -0.10 -1.79 1.62 -154.51 -0.25 -2.04 16 3 C -0.08 -1.69 4.09 -27.89 -0.11 -1.80 16 4 C 0.48 11.49 7.33 -10.99 -0.08 11.41 16 5 O -0.59 -15.25 14.82 5.55 0.08 -15.17 16 6 N -0.44 -11.00 2.18 -116.10 -0.25 -11.26 16 7 C -0.33 -8.12 9.06 -14.93 -0.14 -8.26 16 8 H 0.10 2.37 6.65 -52.49 -0.35 2.02 16 9 C 0.03 0.84 5.12 -17.47 -0.09 0.75 16 10 N -0.88 -22.82 8.83 55.50 0.49 -22.33 16 11 Si 0.93 19.30 29.57 -169.99 -5.03 14.27 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.16 3.86 5.13 -5.19 -0.03 3.83 16 16 C 0.50 12.45 6.44 36.01 0.23 12.68 16 17 O -0.52 -14.47 16.82 -18.75 -0.32 -14.78 16 18 O -0.54 -11.03 13.42 -39.26 -0.53 -11.56 16 19 C -0.19 -2.74 9.87 -26.73 -0.26 -3.00 16 20 C -0.15 -2.52 8.95 -26.74 -0.24 -2.76 16 21 H 0.07 1.31 7.99 -51.93 -0.42 0.89 16 22 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.46 7.68 -51.93 -0.40 1.07 16 25 H 0.09 1.83 7.94 -51.93 -0.41 1.42 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.13 3.09 6.29 -51.93 -0.33 2.77 16 28 H 0.08 1.73 7.61 -51.93 -0.40 1.33 16 29 H 0.39 6.25 9.10 45.56 0.41 6.66 16 30 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 284.59 15.07 4.29 4.29 Total: -1.00 -30.87 284.59 -5.42 -36.29 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -3.55 Total: 10.93 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -0.61 Total: 9.31 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.24 Total: -33.58 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.76 Total: -41.51 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.87 -5.42 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604568708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.804 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds