Wall clock time and date at job start Sun Mar 29 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 115.55241 * 2 1 4 4 C 1.50697 * 109.47015 * 279.85419 * 3 2 1 5 5 O 1.21294 * 120.00214 * 355.51421 * 4 3 2 6 6 N 1.34779 * 120.00332 * 175.51028 * 4 3 2 7 7 C 1.37102 * 119.99804 * 0.02562 * 6 4 3 8 8 H 1.07996 * 119.99737 * 20.51422 * 7 6 4 9 9 C 1.38952 * 119.99934 * 200.51810 * 7 6 4 10 10 N 1.31411 * 120.00154 * 10.20066 * 9 7 6 11 11 Si 1.86799 * 119.99807 * 190.20543 * 9 7 6 12 12 H 1.48492 * 109.47344 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46909 * 119.99788 * 11 9 7 14 14 H 1.48496 * 109.47062 * 239.99749 * 11 9 7 15 15 C 1.46501 * 120.00122 * 180.02562 * 6 4 3 16 16 C 1.50703 * 109.46871 * 83.99080 * 15 6 4 17 17 O 1.20825 * 120.00370 * 0.02562 * 16 15 6 18 18 O 1.34230 * 119.99660 * 179.97438 * 16 15 6 19 19 C 1.53004 * 117.51748 * 145.69874 * 2 1 3 20 20 C 1.52993 * 59.99947 * 107.48145 * 19 2 1 21 21 H 1.09002 * 109.46939 * 64.46429 * 1 2 3 22 22 H 1.08997 * 109.47541 * 184.46743 * 1 2 3 23 23 H 1.09000 * 109.46988 * 304.46922 * 1 2 3 24 24 H 1.09004 * 109.47390 * 159.85703 * 3 2 1 25 25 H 1.09003 * 109.47757 * 39.85730 * 3 2 1 26 26 H 0.96999 * 120.00220 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47071 * 203.98928 * 15 6 4 28 28 H 1.08991 * 109.47184 * 323.98916 * 15 6 4 29 29 H 0.96702 * 116.99530 * 179.97438 * 18 16 15 30 30 H 1.08999 * 117.50327 * 214.97459 * 19 2 1 31 31 H 1.09000 * 117.49441 * 359.97438 * 19 2 1 32 32 H 1.09004 * 117.49664 * 252.50797 * 20 19 2 33 33 H 1.08997 * 117.50143 * 107.49449 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.1871 1.9383 -1.3998 5 8 1.7793 1.2630 -2.3212 6 7 2.6378 3.1879 -1.6281 7 6 3.0992 3.9511 -0.5868 8 1 3.4151 3.4777 0.3311 9 6 3.1603 5.3336 -0.7124 10 7 2.5948 5.9256 -1.7404 11 14 4.0464 6.3505 0.5799 12 1 4.5930 5.4517 1.6279 13 1 5.1577 7.1015 -0.0577 14 1 3.0926 7.3068 1.1968 15 6 2.6346 3.7305 -2.9889 16 6 1.2732 4.2965 -3.3008 17 8 0.3957 4.2517 -2.4713 18 8 1.0356 4.8514 -4.4997 19 6 2.2368 -1.1210 0.7647 20 6 2.2364 -1.1208 -0.7652 21 1 -0.3633 0.4430 -0.9273 22 1 -0.3634 -1.0245 0.0800 23 1 -0.3633 0.5816 0.8472 24 1 3.2171 1.2920 0.3539 25 1 1.6349 2.0485 0.6586 26 1 2.6378 6.8906 -1.8282 27 1 3.3827 4.5194 -3.0672 28 1 2.8688 2.9361 -3.6974 29 1 0.1471 5.2006 -4.6535 30 1 3.1720 -0.8751 1.2678 31 1 1.6118 -1.8584 1.2683 32 1 1.6112 -1.8584 -1.2684 33 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604568708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:38 Heat of formation + Delta-G solvation = -117.558589 kcal Electronic energy + Delta-G solvation = -18160.053000 eV Core-core repulsion = 15186.182262 eV Total energy + Delta-G solvation = -2973.870738 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24625 -40.20385 -38.44328 -36.84892 -36.37423 -33.43271 -31.18866 -29.50912 -28.38694 -26.50318 -23.21130 -22.87496 -21.20147 -20.09476 -18.84354 -18.42761 -17.92344 -17.38436 -16.39064 -16.18834 -16.10285 -15.96186 -15.44397 -14.72054 -14.56333 -13.82024 -13.76040 -13.31131 -13.21121 -13.15446 -12.76894 -12.68258 -12.48745 -12.24749 -12.16197 -12.04857 -11.88578 -11.51692 -11.09172 -10.95084 -10.61418 -10.19591 -9.83846 -8.34446 -5.96875 1.43080 1.49036 1.61871 1.77524 1.92745 2.29733 2.55535 2.81386 3.14084 3.27029 3.87477 3.97815 4.14028 4.22100 4.37342 4.59826 4.73530 4.81650 4.84751 4.87785 4.92870 5.02378 5.07833 5.13561 5.24287 5.37011 5.43097 5.46688 5.77563 5.92230 6.36492 7.10021 7.39735 7.53993 7.94271 8.72380 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.009721 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.180545 B = 2879.689656 C = 3795.350690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.077 4.077 4 C 0.464 3.536 5 O -0.616 6.616 6 N -0.451 5.451 7 C -0.343 4.343 8 H 0.116 0.884 9 C -0.011 4.011 10 N -0.909 5.909 11 Si 1.000 3.000 12 H -0.253 1.253 13 H -0.276 1.276 14 H -0.290 1.290 15 C 0.156 3.844 16 C 0.505 3.495 17 O -0.555 6.555 18 O -0.523 6.523 19 C -0.149 4.149 20 C -0.162 4.162 21 H 0.028 0.972 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.270 0.730 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.410 0.590 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -5.561 3.109 6.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.117 4.117 4 C 0.255 3.745 5 O -0.503 6.503 6 N -0.171 5.171 7 C -0.470 4.470 8 H 0.133 0.867 9 C -0.211 4.211 10 N -0.549 5.549 11 Si 0.823 3.177 12 H -0.176 1.176 13 H -0.202 1.202 14 H -0.217 1.217 15 C 0.030 3.970 16 C 0.348 3.652 17 O -0.444 6.444 18 O -0.335 6.335 19 C -0.186 4.186 20 C -0.199 4.199 21 H 0.047 0.953 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.269 0.731 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.580 -5.862 2.884 6.722 hybrid contribution -0.518 1.398 0.019 1.491 sum 1.062 -4.464 2.903 5.430 Atomic orbital electron populations 1.21185 0.92364 1.01981 1.00537 1.21139 0.94887 0.89842 1.07243 1.20915 1.02128 0.95232 0.93385 1.21005 0.79012 0.82497 0.92008 1.90493 1.51796 1.61225 1.46769 1.43671 1.55051 1.12313 1.06073 1.20120 1.41196 0.89244 0.96423 0.86655 1.26165 0.97056 0.97985 0.99846 1.69804 1.42547 1.10848 1.31719 0.84758 0.77292 0.77768 0.77836 1.17587 1.20155 1.21690 1.20464 0.92203 0.98666 0.85682 1.23831 0.90876 0.72693 0.77828 1.90517 1.48176 1.56904 1.48841 1.84462 1.40558 1.71986 1.36505 1.23236 1.02294 0.99503 0.93578 1.22752 1.01787 1.00765 0.94639 0.95315 0.90759 0.92113 0.88655 0.89880 0.91953 0.85787 0.89974 0.73070 0.87827 0.86834 0.88994 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.44 9.71 71.98 0.70 -2.74 16 2 C -0.13 -4.44 1.62 -52.19 -0.08 -4.52 16 3 C -0.08 -3.03 4.09 29.84 0.12 -2.91 16 4 C 0.46 22.57 7.33 87.66 0.64 23.22 16 5 O -0.62 -32.35 14.82 -3.07 -0.05 -32.40 16 6 N -0.45 -22.86 2.18 -639.60 -1.39 -24.26 16 7 C -0.34 -16.95 9.06 84.04 0.76 -16.19 16 8 H 0.12 5.23 6.65 -2.91 -0.02 5.21 16 9 C -0.01 -0.51 5.12 84.93 0.44 -0.08 16 10 N -0.91 -47.15 8.83 21.66 0.19 -46.96 16 11 Si 1.00 38.89 29.57 68.60 2.03 40.92 16 12 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 13 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 14 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 15 C 0.16 7.66 5.13 85.63 0.44 8.10 16 16 C 0.50 25.32 6.44 71.24 0.46 25.78 16 17 O -0.55 -31.73 16.82 21.97 0.37 -31.36 16 18 O -0.52 -21.30 13.42 -51.42 -0.69 -21.99 16 19 C -0.15 -3.80 9.87 30.59 0.30 -3.50 16 20 C -0.16 -5.15 8.95 30.59 0.27 -4.88 16 21 H 0.03 1.13 7.99 -2.39 -0.02 1.12 16 22 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.10 3.37 7.68 -2.39 -0.02 3.35 16 25 H 0.08 3.35 7.94 -2.39 -0.02 3.33 16 26 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 27 H 0.12 6.13 6.29 -2.39 -0.02 6.11 16 28 H 0.08 3.83 7.61 -2.39 -0.02 3.82 16 29 H 0.41 12.83 9.10 -74.06 -0.67 12.15 16 30 H 0.10 2.37 8.08 -2.39 -0.02 2.35 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -66.26 284.59 4.96 -61.30 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.45 Total: 32.47 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 4.05 Total: 22.27 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.20 Total: -71.21 kcal Atomic # 8 Polarization: -85.39 SS G_CDS: -0.37 Total: -85.75 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -66.26 4.96 -61.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604568708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.257 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds