Wall clock time and date at job start Sun Mar 29 2020 22:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 119.99821 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.42893 * 110.01804 * 64.29921 * 15 14 13 17 17 C 1.54267 * 110.03274 * 302.90898 * 15 14 13 18 18 C 1.54972 * 104.15867 * 217.13751 * 17 15 14 19 19 C 1.54880 * 102.78096 * 37.88630 * 18 17 15 20 20 C 1.53880 * 110.03528 * 185.69235 * 15 14 13 21 21 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 23 23 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 24 24 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 25 25 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 26 26 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 27 27 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 28 28 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 29 29 H 0.96701 * 113.99816 * 300.70211 * 16 15 14 30 30 H 1.09004 * 110.48633 * 335.77984 * 17 15 14 31 31 H 1.09000 * 110.49179 * 98.42574 * 17 15 14 32 32 H 1.08998 * 110.71446 * 279.56994 * 18 17 15 33 33 H 1.09001 * 110.76032 * 156.22521 * 18 17 15 34 34 H 1.08991 * 110.49222 * 203.40946 * 19 18 17 35 35 H 1.09005 * 110.48779 * 80.75911 * 19 18 17 36 36 H 1.09005 * 110.02950 * 238.57118 * 20 15 14 37 37 H 1.08998 * 110.02796 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 6 2.4271 -8.5660 0.0159 16 8 3.1875 -8.5542 1.2257 17 6 3.3691 -8.4612 -1.2013 18 6 3.5835 -9.9313 -1.6423 19 6 2.1873 -10.5633 -1.4184 20 6 1.6763 -9.9021 -0.1217 21 1 -0.4850 0.8402 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8906 25 1 2.8719 -3.6043 -0.8894 26 1 3.1355 -6.1343 0.0057 27 1 0.8060 -7.4568 0.9009 28 1 0.8066 -7.4648 -0.8790 29 1 3.6926 -7.7414 1.3649 30 1 2.8980 -7.8884 -2.0001 31 1 4.3168 -8.0067 -0.9124 32 1 4.3320 -10.4165 -1.0160 33 1 3.8663 -9.9819 -2.6938 34 1 2.2731 -11.6420 -1.2883 35 1 1.5248 -10.3301 -2.2521 36 1 1.8926 -10.5418 0.7340 37 1 0.6035 -9.7219 -0.1916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330901176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:46 Heat of formation + Delta-G solvation = -117.185807 kcal Electronic energy + Delta-G solvation = -17285.903369 eV Core-core repulsion = 14447.881891 eV Total energy + Delta-G solvation = -2838.021478 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01927 -38.58931 -35.19360 -34.04187 -33.44914 -31.08405 -29.42928 -28.84948 -25.99356 -24.32882 -21.71687 -21.07858 -20.18850 -19.56550 -17.30200 -16.71823 -16.11307 -15.90725 -15.34934 -15.09211 -14.72646 -14.40709 -13.85661 -13.61953 -13.19665 -12.78190 -12.54639 -12.20547 -12.04548 -11.66341 -11.41838 -11.40049 -11.17947 -10.94233 -10.90904 -10.85076 -10.61751 -10.10589 -9.96353 -9.67724 -9.20170 -9.02963 -8.85183 -8.32062 -5.96168 -4.00872 3.22945 3.34275 3.38498 3.40072 3.47006 3.90384 4.24318 4.35993 4.47569 4.49302 4.90631 5.11656 5.14420 5.27269 5.37195 5.38620 5.47575 5.49834 5.62551 5.74508 5.76296 5.79871 5.82856 5.99816 6.06588 6.20698 6.21766 6.64115 6.87343 7.41926 7.73393 7.81059 7.85566 8.06824 8.38025 8.74764 9.07488 9.62671 11.14735 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053967 B = 0.003944 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.707593 B = 7097.414997 C = 7265.609427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.532 6.532 13 N -0.745 5.745 14 C 0.096 3.904 15 C 0.119 3.881 16 O -0.554 6.554 17 C -0.153 4.153 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.111 4.111 21 H 0.262 0.738 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.393 0.607 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.375 0.625 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -20.052 -2.094 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.407 6.407 13 N -0.401 5.401 14 C -0.028 4.028 15 C 0.079 3.921 16 O -0.360 6.360 17 C -0.190 4.190 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.149 4.149 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.227 0.773 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.223 0.777 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.933 -20.512 -2.026 21.746 hybrid contribution 1.152 1.509 -0.070 1.900 sum 8.085 -19.003 -2.096 20.758 Atomic orbital electron populations 1.69992 1.06068 1.26710 1.50055 1.25027 0.94830 0.99233 0.95277 0.86644 0.79538 0.83151 0.78538 1.20255 1.21277 1.20238 1.21184 0.92884 0.91028 1.51587 0.92653 1.18897 0.93179 0.89368 0.98630 1.21873 1.00735 0.91924 1.02459 1.21583 0.88677 0.85583 0.74336 1.90676 1.14497 1.87592 1.47968 1.46185 1.09746 1.05695 1.78439 1.22042 0.94911 0.82892 1.02964 1.22153 0.90553 0.94974 0.84470 1.86575 1.64697 1.43536 1.41239 1.23120 0.99695 0.97947 0.98287 1.22454 0.97253 0.95059 1.01073 1.22368 0.96738 0.99863 0.97205 1.22102 0.99606 0.94288 0.98900 0.92878 0.95842 0.95815 0.90210 0.90262 0.77328 0.91019 0.90924 0.77722 0.90223 0.90889 0.91232 0.91428 0.91281 0.91277 0.90094 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 11 C 0.51 9.73 7.83 -10.98 -0.09 9.64 16 12 O -0.53 -12.67 15.98 5.55 0.09 -12.58 16 13 N -0.75 -10.06 5.09 -60.30 -0.31 -10.37 16 14 C 0.10 1.21 4.47 -4.04 -0.02 1.19 16 15 C 0.12 1.18 1.04 -89.50 -0.09 1.08 16 16 O -0.55 -5.77 12.90 -35.23 -0.45 -6.22 16 17 C -0.15 -1.30 5.25 -25.03 -0.13 -1.43 16 18 C -0.12 -0.93 6.91 -24.70 -0.17 -1.10 16 19 C -0.12 -0.94 6.83 -25.08 -0.17 -1.11 16 20 C -0.11 -1.00 6.27 -25.61 -0.16 -1.16 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.39 4.00 7.30 -40.82 -0.30 3.70 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.37 2.94 8.18 45.56 0.37 3.31 16 30 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 31 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 37 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -34.39 305.58 -7.20 -41.59 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.33 Total: 1.62 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.52 Total: -8.50 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.43 Total: -37.16 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.37 Total: -18.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.39 -7.20 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.597 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds