Wall clock time and date at job start Sun Mar 29 2020 22:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 119.99821 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 O 1.42893 * 110.01804 * 64.29921 * 15 14 13 17 17 C 1.54267 * 110.03274 * 302.90898 * 15 14 13 18 18 C 1.54972 * 104.15867 * 217.13751 * 17 15 14 19 19 C 1.54880 * 102.78096 * 37.88630 * 18 17 15 20 20 C 1.53880 * 110.03528 * 185.69235 * 15 14 13 21 21 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 23 23 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 24 24 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 25 25 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 26 26 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 27 27 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 28 28 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 29 29 H 0.96701 * 113.99816 * 300.70211 * 16 15 14 30 30 H 1.09004 * 110.48633 * 335.77984 * 17 15 14 31 31 H 1.09000 * 110.49179 * 98.42574 * 17 15 14 32 32 H 1.08998 * 110.71446 * 279.56994 * 18 17 15 33 33 H 1.09001 * 110.76032 * 156.22521 * 18 17 15 34 34 H 1.08991 * 110.49222 * 203.40946 * 19 18 17 35 35 H 1.09005 * 110.48779 * 80.75911 * 19 18 17 36 36 H 1.09005 * 110.02950 * 238.57118 * 20 15 14 37 37 H 1.08998 * 110.02796 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 6 2.4271 -8.5660 0.0159 16 8 3.1875 -8.5542 1.2257 17 6 3.3691 -8.4612 -1.2013 18 6 3.5835 -9.9313 -1.6423 19 6 2.1873 -10.5633 -1.4184 20 6 1.6763 -9.9021 -0.1217 21 1 -0.4850 0.8402 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8906 25 1 2.8719 -3.6043 -0.8894 26 1 3.1355 -6.1343 0.0057 27 1 0.8060 -7.4568 0.9009 28 1 0.8066 -7.4648 -0.8790 29 1 3.6926 -7.7414 1.3649 30 1 2.8980 -7.8884 -2.0001 31 1 4.3168 -8.0067 -0.9124 32 1 4.3320 -10.4165 -1.0160 33 1 3.8663 -9.9819 -2.6938 34 1 2.2731 -11.6420 -1.2883 35 1 1.5248 -10.3301 -2.2521 36 1 1.8926 -10.5418 0.7340 37 1 0.6035 -9.7219 -0.1916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330901176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:46 Heat of formation + Delta-G solvation = -143.343619 kcal Electronic energy + Delta-G solvation = -17287.037657 eV Core-core repulsion = 14447.881891 eV Total energy + Delta-G solvation = -2839.155766 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12796 -39.84119 -35.98080 -35.60100 -35.26367 -33.03355 -30.39569 -29.65587 -27.74264 -25.57845 -23.43243 -21.97934 -21.24860 -20.71581 -18.88994 -18.06237 -17.41634 -17.00636 -16.68116 -16.47673 -16.17150 -15.79186 -15.00129 -14.71131 -14.42434 -14.18707 -13.95710 -13.60863 -13.24450 -13.11092 -12.76953 -12.54759 -12.50021 -12.04240 -12.02702 -11.91021 -11.73829 -11.63314 -11.45757 -11.32489 -10.94224 -10.72172 -10.56089 -10.15704 -8.17616 -6.31989 1.42736 1.47264 1.55013 1.68659 2.17914 2.44808 3.15390 3.17624 3.47271 3.62166 3.73650 4.04890 4.24317 4.31806 4.43599 4.50399 4.52061 4.56517 4.69861 4.77875 4.83464 4.93317 5.03231 5.07971 5.12363 5.19695 5.28109 5.39508 5.46549 5.50831 5.62984 5.85518 6.17481 6.53247 6.74268 6.86561 7.30840 7.38562 8.94904 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053967 B = 0.003944 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.707593 B = 7097.414997 C = 7265.609427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.716 5.716 14 C 0.097 3.903 15 C 0.128 3.872 16 O -0.564 6.564 17 C -0.152 4.152 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.116 4.116 21 H 0.263 0.737 22 H -0.018 1.018 23 H -0.019 1.019 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.414 0.586 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.386 0.614 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -20.544 -2.445 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.300 3.700 12 O -0.469 6.469 13 N -0.370 5.370 14 C -0.027 4.027 15 C 0.087 3.913 16 O -0.372 6.372 17 C -0.190 4.190 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.154 4.154 21 H 0.071 0.929 22 H 0.000 1.000 23 H -0.001 1.001 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.252 0.748 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.235 0.765 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.974 -21.048 -2.375 23.412 hybrid contribution 0.208 1.591 0.060 1.605 sum 10.181 -19.458 -2.315 22.082 Atomic orbital electron populations 1.70180 1.08368 1.27871 1.51434 1.26155 0.95714 1.04011 0.94616 0.85362 0.78030 0.77268 0.79507 1.18617 1.21441 1.18657 1.21699 0.94055 0.91573 1.50879 0.90440 1.18699 0.93775 0.92592 0.94648 1.21645 0.99285 0.89855 1.05047 1.21391 0.87810 0.86793 0.74025 1.90664 1.16878 1.88393 1.51012 1.45807 1.10755 1.04553 1.75912 1.22142 0.95612 0.83163 1.01795 1.22112 0.90207 0.93862 0.85161 1.86573 1.64752 1.44404 1.41461 1.23122 0.99787 0.98855 0.97196 1.22460 0.97165 0.94182 1.01789 1.22382 0.96795 1.00476 0.96321 1.22161 0.99554 0.93896 0.99748 0.92872 1.00004 1.00075 0.87509 0.87514 0.74825 0.92865 0.91594 0.76462 0.90769 0.89421 0.91020 0.90338 0.90132 0.91020 0.90375 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 2 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.26 4.26 29.85 0.13 2.38 16 10 C -0.12 -4.65 5.64 29.85 0.17 -4.48 16 11 C 0.51 19.50 7.83 87.66 0.69 20.18 16 12 O -0.59 -29.24 15.98 -3.04 -0.05 -29.29 16 13 N -0.72 -18.31 5.09 -463.07 -2.36 -20.67 16 14 C 0.10 2.39 4.47 86.38 0.39 2.77 16 15 C 0.13 2.30 1.04 -10.07 -0.01 2.29 16 16 O -0.56 -10.53 12.90 -148.98 -1.92 -12.46 16 17 C -0.15 -2.19 5.25 31.70 0.17 -2.02 16 18 C -0.12 -1.49 6.91 31.91 0.22 -1.27 16 19 C -0.12 -1.60 6.83 31.67 0.22 -1.39 16 20 C -0.12 -1.94 6.27 31.32 0.20 -1.74 16 21 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 22 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 23 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 24 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 25 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 26 H 0.41 7.21 7.30 -92.71 -0.68 6.54 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.39 5.00 8.18 -74.06 -0.61 4.39 16 30 H 0.07 1.18 7.85 -2.38 -0.02 1.16 16 31 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.08 1.36 7.96 -2.38 -0.02 1.34 16 37 H 0.07 1.28 7.67 -2.39 -0.02 1.26 16 Total: -1.00 -77.47 305.58 0.61 -76.86 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.22 Total: 12.82 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 2.85 Total: -13.89 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.07 Total: -80.20 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.97 Total: -41.74 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.47 0.61 -76.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.485 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds