Wall clock time and date at job start Sun Mar 29 2020 22:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48505 * 109.47341 * 270.00369 * 3 2 1 5 5 H 1.48506 * 109.47030 * 30.00167 * 3 2 1 6 6 H 1.48503 * 109.47183 * 150.00448 * 3 2 1 7 7 C 1.37870 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99941 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99704 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00218 * 180.02562 * 11 10 9 14 14 O 1.41596 * 120.00190 * 180.02562 * 13 11 10 15 15 C 1.42896 * 114.00215 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46906 * 84.99737 * 15 14 13 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 C 1.53000 * 109.47231 * 204.99596 * 15 14 13 21 21 H 0.97005 * 120.00512 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47309 * 59.99730 * 9 7 2 23 23 H 1.09005 * 109.46858 * 299.99376 * 9 7 2 24 24 H 1.09002 * 109.46958 * 59.99830 * 10 9 7 25 25 H 1.08992 * 109.47085 * 299.99825 * 10 9 7 26 26 H 0.97000 * 119.99801 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.46984 * 324.99916 * 15 14 13 28 28 H 1.08996 * 109.47853 * 300.00254 * 16 15 14 29 29 H 1.09002 * 109.47153 * 60.00282 * 16 15 14 30 30 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 32 32 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 33 33 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 34 34 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 36 36 H 1.08992 * 109.47399 * 300.00058 * 20 15 14 37 37 H 1.09004 * 109.46724 * 60.00544 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 8 6.1349 -1.5861 -0.0026 13 7 6.2025 -3.8037 -0.0028 14 8 7.6184 -3.8036 -0.0034 15 6 8.1997 -5.1090 -0.0035 16 6 8.2916 -5.6263 -1.4405 17 6 8.9145 -7.0237 -1.4407 18 6 10.3167 -6.9572 -0.8318 19 6 10.2247 -6.4399 0.6051 20 6 9.6017 -5.0431 0.6054 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6803 0.8887 23 1 3.8745 -0.6800 -0.8912 24 1 3.6578 -3.1505 -0.8907 25 1 3.6586 -3.1501 0.8892 26 1 5.7175 -4.6437 -0.0021 27 1 7.5787 -5.7833 0.5863 28 1 7.2928 -5.6733 -1.8744 29 1 8.9126 -4.9520 -2.0303 30 1 8.9805 -7.3920 -2.4644 31 1 8.2939 -7.6982 -0.8507 32 1 10.9373 -6.2827 -1.4218 33 1 10.7602 -7.9528 -0.8316 34 1 11.2235 -6.3930 1.0390 35 1 9.6041 -7.1144 1.1950 36 1 10.2227 -4.3689 0.0157 37 1 9.5362 -4.6746 1.6292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812544464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:26 Heat of formation + Delta-G solvation = -87.539060 kcal Electronic energy + Delta-G solvation = -17087.638234 eV Core-core repulsion = 14250.902335 eV Total energy + Delta-G solvation = -2836.735899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71005 -39.74645 -37.26736 -35.54392 -33.77156 -32.83784 -31.76707 -30.28207 -27.82682 -23.75105 -23.47555 -23.22012 -21.50230 -20.66896 -19.32094 -18.97452 -17.70114 -16.77603 -16.52517 -16.21062 -15.75410 -15.40819 -15.18866 -14.83834 -14.68013 -14.40994 -14.00615 -13.88115 -13.41192 -13.20029 -12.93234 -12.71655 -12.17689 -12.11384 -12.05249 -11.97306 -11.77197 -11.54641 -11.41595 -11.39159 -11.07866 -10.89169 -10.76870 -9.89132 -8.30481 -6.33186 0.92123 1.34533 1.36951 1.51968 1.62753 2.36221 3.05552 3.37609 3.65621 3.68288 3.83789 4.00983 4.18269 4.21277 4.30670 4.35083 4.47205 4.47586 4.51121 4.62194 4.90094 4.94131 5.00577 5.06218 5.16621 5.17826 5.27935 5.33297 5.34663 5.43206 5.46825 5.59981 5.85070 6.22996 6.37796 6.73445 7.31765 7.32779 8.84881 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.060211 B = 0.003861 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.917119 B = 7250.550426 C = 7480.104026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.002 3.998 10 C -0.100 4.100 11 C 0.524 3.476 12 O -0.579 6.579 13 N -0.586 5.586 14 O -0.175 6.175 15 C 0.056 3.944 16 C -0.142 4.142 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.112 4.112 21 H 0.267 0.733 22 H 0.011 0.989 23 H 0.010 0.990 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.424 0.576 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.136 -18.450 -0.471 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.036 4.036 10 C -0.140 4.140 11 C 0.313 3.687 12 O -0.457 6.457 13 N -0.290 5.290 14 O -0.179 6.179 15 C -0.001 4.001 16 C -0.180 4.180 17 C -0.150 4.150 18 C -0.161 4.161 19 C -0.146 4.146 20 C -0.151 4.151 21 H 0.076 0.924 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.268 0.732 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.545 -17.434 -0.475 26.949 hybrid contribution -0.150 0.546 -0.107 0.577 sum 20.395 -16.888 -0.582 26.486 Atomic orbital electron populations 1.70009 1.07688 1.28085 1.52496 1.25745 0.95449 1.02687 0.94338 0.85888 0.79255 0.79809 0.79123 1.19440 1.20358 1.18720 1.21381 0.90881 0.93926 1.50264 0.92542 1.19271 0.94180 0.93433 0.96680 1.21486 0.85718 1.00530 1.06233 1.21677 0.90581 0.81957 0.74486 1.90660 1.70814 1.33185 1.51079 1.47633 0.94293 1.09593 1.77453 1.90610 1.01628 1.28641 1.97029 1.22929 0.95810 0.83767 0.97635 1.22086 1.01829 0.98267 0.95817 1.21500 0.96619 0.94889 1.02035 1.21613 0.96800 1.01988 0.95712 1.21486 1.01560 0.93948 0.97627 1.21581 0.92899 0.99569 1.01015 0.92357 0.97016 0.97171 0.86735 0.86692 0.73189 0.88959 0.91630 0.92444 0.90848 0.90654 0.92305 0.90126 0.90088 0.90627 0.91911 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.96 21.44 0.30 -58.26 16 2 C 0.02 0.93 5.47 84.65 0.46 1.39 16 3 Si 0.93 46.82 27.47 68.60 1.88 48.70 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -13.19 6.54 99.48 0.65 -12.54 16 7 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 8 H 0.06 3.32 7.99 -2.91 -0.02 3.30 16 9 C 0.00 0.12 3.33 29.85 0.10 0.22 16 10 C -0.10 -3.65 5.64 29.85 0.17 -3.48 16 11 C 0.52 19.60 7.97 87.66 0.70 20.30 16 12 O -0.58 -27.99 16.39 14.36 0.24 -27.75 16 13 N -0.59 -16.42 6.37 -173.53 -1.11 -17.53 16 14 O -0.17 -5.17 10.75 -21.38 -0.23 -5.40 16 15 C 0.06 1.07 2.74 30.59 0.08 1.15 16 16 C -0.14 -2.37 5.57 30.59 0.17 -2.20 16 17 C -0.11 -1.27 5.92 30.60 0.18 -1.09 16 18 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 19 C -0.11 -1.17 5.92 30.58 0.18 -0.99 16 20 C -0.11 -1.86 5.57 30.58 0.17 -1.69 16 21 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 22 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 23 H 0.01 0.51 7.53 -2.38 -0.02 0.49 16 24 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 25 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 26 H 0.42 7.98 8.43 -92.71 -0.78 7.20 16 27 H 0.09 1.38 7.94 -2.39 -0.02 1.36 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.30 304.47 3.93 -71.37 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.20 Total: 5.95 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 2.65 Total: -17.09 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -0.81 Total: -75.79 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: 0.01 Total: -33.15 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.88 Total: 48.70 kcal Total: -75.30 3.93 -71.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812544464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.166 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds