Wall clock time and date at job start Sun Mar 29 2020 22:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00374 * 2 1 4 4 H 1.48504 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47085 * 300.00414 * 3 2 1 6 6 H 1.48497 * 109.46873 * 60.00261 * 3 2 1 7 7 C 1.37875 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00530 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.46847 * 111.00111 * 169.99928 * 10 9 7 12 12 C 1.53043 * 109.50674 * 185.86808 * 11 10 9 13 13 C 1.53083 * 109.25791 * 300.86471 * 12 11 10 14 14 C 1.53055 * 109.24451 * 57.64601 * 13 12 11 15 15 C 1.46842 * 110.99944 * 294.25697 * 10 9 7 16 16 O 1.42897 * 109.49367 * 177.61975 * 13 12 11 17 17 C 1.43112 * 113.75325 * 61.33375 * 16 13 12 18 18 C 1.53252 * 108.94491 * 57.87327 * 17 16 13 19 19 C 1.53259 * 108.98033 * 305.42541 * 18 17 16 20 20 O 1.42918 * 109.45484 * 297.76423 * 13 12 11 21 21 H 0.96994 * 119.99535 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47065 * 60.00333 * 9 7 2 23 23 H 1.08998 * 109.47214 * 299.99996 * 9 7 2 24 24 H 1.08999 * 109.46453 * 65.85750 * 11 10 9 25 25 H 1.08997 * 109.46353 * 305.87969 * 11 10 9 26 26 H 1.09001 * 109.50758 * 180.93015 * 12 11 10 27 27 H 1.09001 * 109.51115 * 60.79944 * 12 11 10 28 28 H 1.08997 * 109.51100 * 62.31560 * 14 13 12 29 29 H 1.09007 * 109.49962 * 182.44465 * 14 13 12 30 30 H 1.08996 * 109.46285 * 294.16644 * 15 10 9 31 31 H 1.09001 * 109.46242 * 54.13604 * 15 10 9 32 32 H 1.08999 * 109.55766 * 298.03232 * 17 16 13 33 33 H 1.09000 * 109.64735 * 177.76324 * 17 16 13 34 34 H 1.09002 * 109.57123 * 65.30827 * 18 17 16 35 35 H 1.08994 * 109.56917 * 185.54826 * 18 17 16 36 36 H 1.09002 * 109.56023 * 174.42435 * 19 18 17 37 37 H 1.08996 * 109.55972 * 294.76265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5214 -4.8932 0.2363 12 6 2.5583 -6.0104 0.3737 13 6 3.3919 -6.0861 -0.9080 14 6 4.0548 -4.7296 -1.1595 15 6 2.9745 -3.6493 -1.2522 16 8 4.3980 -7.0906 -0.7639 17 6 3.8738 -8.4049 -0.5495 18 6 2.9573 -8.7723 -1.7215 19 6 1.8903 -7.6837 -1.8802 20 8 2.5424 -6.4134 -2.0097 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 0.8600 -5.1127 -0.6018 25 1 0.9358 -4.8263 1.1531 26 1 2.0500 -6.9612 0.5340 27 1 3.2113 -5.7989 1.2205 28 1 4.7322 -4.4975 -0.3378 29 1 4.6144 -4.7659 -2.0943 30 1 2.3064 -3.8740 -2.0836 31 1 3.4442 -2.6793 -1.4158 32 1 3.3036 -8.4233 0.3793 33 1 4.6934 -9.1209 -0.4888 34 1 3.5454 -8.8434 -2.6365 35 1 2.4755 -9.7294 -1.5220 36 1 1.2945 -7.8838 -2.7708 37 1 1.2450 -7.6743 -1.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815157723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:44 Heat of formation + Delta-G solvation = -92.618263 kcal Electronic energy + Delta-G solvation = -18522.871358 eV Core-core repulsion = 15685.915208 eV Total energy + Delta-G solvation = -2836.956149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52385 -37.19713 -35.52005 -33.39946 -32.36050 -30.57862 -30.26162 -26.60325 -25.95992 -23.89314 -22.79953 -21.79413 -20.34843 -19.06093 -17.21521 -16.45003 -16.27213 -15.87096 -14.98464 -14.79213 -14.67852 -14.04054 -13.80817 -13.62712 -13.25768 -12.81008 -12.35614 -12.12314 -11.94660 -11.68781 -11.50245 -11.11103 -10.94371 -10.84448 -10.69558 -10.54556 -10.41853 -10.26287 -9.96834 -9.76182 -9.25098 -9.10301 -8.41471 -7.19742 -6.00500 -4.01659 3.33188 3.40493 3.45605 3.68633 3.76506 4.44626 4.62339 4.65215 4.81238 4.89613 5.05511 5.09802 5.27024 5.30312 5.35403 5.52461 5.60802 5.66465 5.81109 5.85415 5.89630 5.99238 6.13220 6.19078 6.30473 6.42497 6.69567 6.75972 6.96527 7.32807 7.38153 7.39525 7.83005 8.11363 8.22966 8.57626 9.06398 9.62635 11.10558 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052464 B = 0.005604 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.568112 B = 4995.500270 C = 5179.494753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.063 3.937 12 C -0.162 4.162 13 C 0.274 3.726 14 C -0.089 4.089 15 C 0.070 3.930 16 O -0.387 6.387 17 C 0.055 3.945 18 C -0.190 4.190 19 C 0.053 3.947 20 O -0.379 6.379 21 H 0.260 0.740 22 H -0.008 1.008 23 H 0.030 0.970 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 -16.492 -1.950 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.066 4.066 12 C -0.200 4.200 13 C 0.198 3.802 14 C -0.127 4.127 15 C -0.059 4.059 16 O -0.308 6.308 17 C -0.022 4.022 18 C -0.228 4.228 19 C -0.024 4.024 20 O -0.299 6.299 21 H 0.070 0.930 22 H 0.010 0.990 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.312 -16.115 -1.729 17.056 hybrid contribution -0.555 0.342 -0.400 0.765 sum 4.757 -15.773 -2.129 16.612 Atomic orbital electron populations 1.69973 1.06088 1.26629 1.51221 1.24993 0.94855 0.99329 0.95473 0.86446 0.80120 0.83433 0.77464 1.19603 1.21135 1.21058 1.21212 0.93567 0.89895 1.49786 0.91718 1.19704 0.90056 0.87269 0.96126 1.62083 1.27914 1.02538 1.33727 1.21858 0.94383 0.90035 1.00356 1.22586 0.99693 0.99154 0.98613 1.22860 0.82848 0.88771 0.85710 1.21536 0.98695 0.89472 1.03017 1.21882 0.94711 0.98063 0.91220 1.88135 1.34119 1.16439 1.92128 1.22581 0.98092 0.85064 0.96473 1.22763 0.99388 0.99856 1.00815 1.22653 0.94018 0.83248 1.02477 1.88222 1.61217 1.35705 1.44793 0.93015 0.99045 0.95207 0.95384 0.91175 0.91906 0.89523 0.89314 0.90825 0.95077 0.89122 0.92737 0.88811 0.90286 0.90163 0.88711 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.28 8.43 -34.44 -0.29 -14.57 16 8 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 9 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 10 N -0.54 -11.88 4.65 -236.10 -1.10 -12.97 16 11 C 0.06 1.17 5.33 -3.83 -0.02 1.15 16 12 C -0.16 -2.55 4.36 -26.67 -0.12 -2.66 16 13 C 0.27 4.44 1.08 -26.66 -0.03 4.41 16 14 C -0.09 -1.54 5.48 -26.67 -0.15 -1.69 16 15 C 0.07 1.42 5.16 -3.83 -0.02 1.40 16 16 O -0.39 -5.88 10.36 -59.03 -0.61 -6.49 16 17 C 0.05 0.61 6.60 37.29 0.25 0.86 16 18 C -0.19 -1.93 6.34 -26.47 -0.17 -2.10 16 19 C 0.05 0.64 6.62 37.29 0.25 0.89 16 20 O -0.38 -6.20 9.20 -59.03 -0.54 -6.74 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 23 H 0.03 0.84 7.99 -51.93 -0.41 0.42 16 24 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 25 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 26 H 0.06 0.84 5.14 -51.93 -0.27 0.58 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.03 0.66 7.76 -51.93 -0.40 0.26 16 31 H 0.09 1.95 6.69 -51.93 -0.35 1.60 16 32 H 0.05 0.57 6.59 -51.93 -0.34 0.23 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.65 6.49 -51.93 -0.34 0.31 16 LS Contribution 284.89 15.07 4.29 4.29 Total: -1.00 -30.97 284.89 -8.48 -39.45 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.82 Total: -2.30 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.42 Total: -5.76 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.36 Total: -39.15 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.15 Total: -13.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.97 -8.48 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815157723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.171 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds