Wall clock time and date at job start Sun Mar 29 2020 22:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00374 * 2 1 4 4 H 1.48504 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47085 * 300.00414 * 3 2 1 6 6 H 1.48497 * 109.46873 * 60.00261 * 3 2 1 7 7 C 1.37875 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00530 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.46847 * 111.00111 * 169.99928 * 10 9 7 12 12 C 1.53043 * 109.50674 * 185.86808 * 11 10 9 13 13 C 1.53083 * 109.25791 * 300.86471 * 12 11 10 14 14 C 1.53055 * 109.24451 * 57.64601 * 13 12 11 15 15 C 1.46842 * 110.99944 * 294.25697 * 10 9 7 16 16 O 1.42897 * 109.49367 * 177.61975 * 13 12 11 17 17 C 1.43112 * 113.75325 * 61.33375 * 16 13 12 18 18 C 1.53252 * 108.94491 * 57.87327 * 17 16 13 19 19 C 1.53259 * 108.98033 * 305.42541 * 18 17 16 20 20 O 1.42918 * 109.45484 * 297.76423 * 13 12 11 21 21 H 0.96994 * 119.99535 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47065 * 60.00333 * 9 7 2 23 23 H 1.08998 * 109.47214 * 299.99996 * 9 7 2 24 24 H 1.08999 * 109.46453 * 65.85750 * 11 10 9 25 25 H 1.08997 * 109.46353 * 305.87969 * 11 10 9 26 26 H 1.09001 * 109.50758 * 180.93015 * 12 11 10 27 27 H 1.09001 * 109.51115 * 60.79944 * 12 11 10 28 28 H 1.08997 * 109.51100 * 62.31560 * 14 13 12 29 29 H 1.09007 * 109.49962 * 182.44465 * 14 13 12 30 30 H 1.08996 * 109.46285 * 294.16644 * 15 10 9 31 31 H 1.09001 * 109.46242 * 54.13604 * 15 10 9 32 32 H 1.08999 * 109.55766 * 298.03232 * 17 16 13 33 33 H 1.09000 * 109.64735 * 177.76324 * 17 16 13 34 34 H 1.09002 * 109.57123 * 65.30827 * 18 17 16 35 35 H 1.08994 * 109.56917 * 185.54826 * 18 17 16 36 36 H 1.09002 * 109.56023 * 174.42435 * 19 18 17 37 37 H 1.08996 * 109.55972 * 294.76265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 1.5214 -4.8932 0.2363 12 6 2.5583 -6.0104 0.3737 13 6 3.3919 -6.0861 -0.9080 14 6 4.0548 -4.7296 -1.1595 15 6 2.9745 -3.6493 -1.2522 16 8 4.3980 -7.0906 -0.7639 17 6 3.8738 -8.4049 -0.5495 18 6 2.9573 -8.7723 -1.7215 19 6 1.8903 -7.6837 -1.8802 20 8 2.5424 -6.4134 -2.0097 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 0.8600 -5.1127 -0.6018 25 1 0.9358 -4.8263 1.1531 26 1 2.0500 -6.9612 0.5340 27 1 3.2113 -5.7989 1.2205 28 1 4.7322 -4.4975 -0.3378 29 1 4.6144 -4.7659 -2.0943 30 1 2.3064 -3.8740 -2.0836 31 1 3.4442 -2.6793 -1.4158 32 1 3.3036 -8.4233 0.3793 33 1 4.6934 -9.1209 -0.4888 34 1 3.5454 -8.8434 -2.6365 35 1 2.4755 -9.7294 -1.5220 36 1 1.2945 -7.8838 -2.7708 37 1 1.2450 -7.6743 -1.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815157723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:44 Heat of formation + Delta-G solvation = -114.120621 kcal Electronic energy + Delta-G solvation = -18523.803770 eV Core-core repulsion = 15685.915208 eV Total energy + Delta-G solvation = -2837.888562 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70228 -38.75352 -36.63937 -35.16685 -33.87406 -32.10706 -31.65525 -28.56840 -26.89851 -25.45151 -24.33738 -23.37978 -21.78863 -20.30308 -18.45976 -18.37011 -17.63006 -17.09090 -16.54447 -16.17703 -15.84223 -15.50398 -15.37478 -15.25331 -14.27568 -14.20118 -14.10498 -13.81725 -13.34326 -13.16152 -12.86605 -12.63200 -12.45158 -12.42654 -12.18297 -12.15596 -11.96521 -11.74106 -11.54704 -11.20956 -10.96048 -10.61826 -10.34822 -9.05162 -8.20140 -6.30267 1.42646 1.42864 1.57041 2.41395 2.59935 2.66377 3.12324 3.26357 3.54608 3.72491 3.82034 3.85804 4.13918 4.21256 4.36090 4.39920 4.43482 4.47453 4.51752 4.64944 4.75612 4.78828 4.84251 4.89864 4.99887 5.04759 5.08255 5.15406 5.26646 5.32209 5.65922 5.91374 6.04473 6.27741 6.30021 6.60891 6.85750 7.39594 8.91580 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052464 B = 0.005604 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.568112 B = 4995.500270 C = 5179.494753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.541 5.541 11 C 0.062 3.938 12 C -0.151 4.151 13 C 0.278 3.722 14 C -0.085 4.085 15 C 0.076 3.924 16 O -0.401 6.401 17 C 0.043 3.957 18 C -0.182 4.182 19 C 0.040 3.960 20 O -0.406 6.406 21 H 0.264 0.736 22 H -0.041 1.041 23 H 0.006 0.994 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -17.818 -1.728 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.066 4.066 12 C -0.189 4.189 13 C 0.201 3.799 14 C -0.123 4.123 15 C -0.052 4.052 16 O -0.323 6.323 17 C -0.033 4.033 18 C -0.219 4.219 19 C -0.036 4.036 20 O -0.327 6.327 21 H 0.073 0.927 22 H -0.023 1.023 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.553 -17.477 -1.506 18.726 hybrid contribution -0.986 0.647 -0.491 1.278 sum 5.567 -16.830 -1.997 17.839 Atomic orbital electron populations 1.70098 1.07808 1.27865 1.51892 1.25932 0.95741 1.03268 0.94736 0.85305 0.79031 0.78416 0.77694 1.18571 1.20473 1.20339 1.21500 0.93726 0.90920 1.49939 0.91648 1.19363 0.90087 0.88942 0.93409 1.62025 1.27062 1.02913 1.34625 1.21922 0.95301 0.89492 0.99935 1.22492 0.98863 0.98915 0.98650 1.22564 0.83005 0.88604 0.85704 1.21418 0.97564 0.89536 1.03781 1.21782 0.94972 0.98602 0.89888 1.88100 1.34039 1.17844 1.92285 1.22946 0.99464 0.83567 0.97331 1.22719 0.98553 1.00418 1.00235 1.22968 0.94790 0.82391 1.03443 1.88187 1.61603 1.37973 1.44956 0.92679 1.02297 0.97546 0.96192 0.91132 0.89035 0.89439 0.88990 0.89762 0.96581 0.90863 0.91673 0.86455 0.90705 0.86917 0.87469 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.52 -30.18 8.43 25.60 0.22 -29.96 16 8 H 0.07 3.69 7.12 -2.91 -0.02 3.67 16 9 C 0.21 11.49 4.72 85.56 0.40 11.89 16 10 N -0.54 -24.49 4.65 -900.88 -4.18 -28.68 16 11 C 0.06 2.33 5.33 86.33 0.46 2.79 16 12 C -0.15 -4.50 4.36 30.64 0.13 -4.37 16 13 C 0.28 8.59 1.08 30.64 0.03 8.63 16 14 C -0.09 -2.90 5.48 30.63 0.17 -2.73 16 15 C 0.08 3.16 5.16 86.33 0.45 3.61 16 16 O -0.40 -11.21 10.36 -126.23 -1.31 -12.52 16 17 C 0.04 0.81 6.60 72.07 0.48 1.28 16 18 C -0.18 -3.07 6.34 30.77 0.20 -2.88 16 19 C 0.04 0.89 6.62 72.07 0.48 1.36 16 20 O -0.41 -12.82 9.20 -126.23 -1.16 -13.98 16 21 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 22 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 23 H 0.01 0.38 7.99 -2.39 -0.02 0.36 16 24 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 25 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 26 H 0.09 2.20 5.14 -2.39 -0.01 2.19 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.02 0.71 7.76 -2.39 -0.02 0.69 16 31 H 0.07 3.25 6.69 -2.39 -0.02 3.24 16 32 H 0.07 1.11 6.59 -2.39 -0.02 1.09 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.26 6.49 -2.39 -0.02 1.25 16 Total: -1.00 -67.52 284.89 0.17 -67.35 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.04 Total: 7.76 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.47 Total: -9.85 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.90 Total: -85.56 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -2.47 Total: -26.50 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.52 0.17 -67.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815157723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.766 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds