Wall clock time and date at job start Sun Mar 29 2020 23:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46932 * 2 1 4 4 C 1.52995 * 109.46969 * 240.00019 * 2 1 3 5 5 C 1.50699 * 109.46684 * 120.00001 * 2 1 3 6 6 O 1.21273 * 120.00520 * 0.02562 * 5 2 1 7 7 N 1.34781 * 119.99425 * 180.02562 * 5 2 1 8 8 O 1.41597 * 119.99655 * 185.04515 * 7 5 2 9 9 C 1.42900 * 114.00061 * 185.23285 * 8 7 5 10 10 C 1.52996 * 109.47429 * 184.37355 * 9 8 7 11 11 C 1.50706 * 115.55198 * 295.02018 * 10 9 8 12 12 H 1.07994 * 119.99962 * 114.72622 * 11 10 9 13 13 C 1.37882 * 119.99779 * 294.45167 * 11 10 9 14 14 N 1.31512 * 119.99861 * 174.42488 * 13 11 10 15 15 Si 1.86805 * 119.99814 * 354.42517 * 13 11 10 16 16 H 1.48497 * 109.46948 * 91.08684 * 15 13 11 17 17 H 1.48499 * 109.46584 * 211.08585 * 15 13 11 18 18 H 1.48503 * 109.47081 * 331.08684 * 15 13 11 19 19 C 1.53001 * 117.49976 * 80.68797 * 10 9 8 20 20 C 1.52998 * 117.50068 * 149.34657 * 10 9 8 21 21 H 1.08999 * 109.47232 * 300.00035 * 1 2 3 22 22 H 1.09001 * 109.47005 * 59.99904 * 1 2 3 23 23 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46632 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47354 * 299.99883 * 3 2 1 26 26 H 1.08999 * 109.47191 * 59.99940 * 3 2 1 27 27 H 1.08995 * 109.47184 * 299.99853 * 4 2 1 28 28 H 1.09001 * 109.47194 * 60.00192 * 4 2 1 29 29 H 1.09007 * 109.47027 * 179.97438 * 4 2 1 30 30 H 0.96999 * 120.00219 * 5.04233 * 7 5 2 31 31 H 1.09004 * 109.47023 * 64.37290 * 9 8 7 32 32 H 1.08995 * 109.47302 * 304.37362 * 9 8 7 33 33 H 0.96994 * 119.99803 * 180.02562 * 14 13 11 34 34 H 1.08998 * 117.50192 * 215.00575 * 19 10 9 35 35 H 1.09002 * 117.49601 * 0.02562 * 19 10 9 36 36 H 1.08998 * 117.49799 * 359.97438 * 20 10 9 37 37 H 1.09008 * 117.50251 * 144.97550 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1717 2.0285 7 7 3.3574 -0.8331 1.4440 8 8 3.8303 -1.5916 2.5422 9 6 5.2476 -1.5401 2.7170 10 6 5.6554 -2.4759 3.8566 11 6 5.1450 -2.0970 5.2230 12 1 4.4425 -2.7386 5.7341 13 6 5.5793 -0.9340 5.8231 14 7 5.0532 -0.5470 6.9646 15 14 6.9148 0.0917 5.0146 16 1 6.2911 1.1042 4.1253 17 1 7.7140 0.7776 6.0616 18 1 7.8010 -0.7913 4.2144 19 6 5.7778 -3.9671 3.5368 20 6 7.0365 -3.1291 3.7745 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7208 -1.2495 30 1 3.9871 -0.4018 0.8454 31 1 5.5469 -0.5204 2.9594 32 1 5.7390 -1.8537 1.7960 33 1 5.3585 0.2713 7.3865 34 1 5.4892 -4.6740 4.3145 35 1 5.5683 -4.2813 2.5143 36 1 7.6544 -2.8924 2.9084 37 1 7.5762 -3.2844 4.7088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853665064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:39 Heat of formation + Delta-G solvation = -15.795055 kcal Electronic energy + Delta-G solvation = -17896.688088 eV Core-core repulsion = 15063.063243 eV Total energy + Delta-G solvation = -2833.624845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71343 -37.64295 -35.83799 -35.36141 -32.12609 -31.50421 -27.52938 -27.25868 -26.68080 -25.01746 -22.94224 -21.59843 -19.70250 -18.80475 -17.64624 -16.56198 -16.24795 -15.47143 -14.93841 -14.77484 -14.11921 -14.02765 -13.90527 -13.27157 -12.83465 -12.66391 -12.43712 -12.35112 -12.27794 -11.91045 -11.84639 -11.21014 -11.09185 -11.07496 -11.02195 -10.64300 -10.38076 -10.28685 -9.68859 -9.37292 -9.12008 -8.72481 -8.50144 -8.30750 -6.10012 -4.10486 2.35596 2.93419 3.19422 3.31694 3.34605 4.37396 4.42142 4.60311 4.70947 4.74661 5.06813 5.16659 5.27217 5.36042 5.45165 5.53342 5.57173 5.65667 5.75321 5.77953 5.81848 5.85176 5.91630 6.07181 6.10173 6.22757 6.28768 6.44033 6.64164 6.91341 7.06891 7.39234 7.62578 7.70431 8.50560 8.65191 8.95451 9.51087 11.02356 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.006702 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.007374 B = 4176.626980 C = 4438.105054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.141 4.141 5 C 0.527 3.473 6 O -0.518 6.518 7 N -0.606 5.606 8 O -0.112 6.112 9 C 0.067 3.933 10 C 0.000 4.000 11 C -0.478 4.478 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.866 3.134 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.250 1.250 19 C -0.175 4.175 20 C -0.180 4.180 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.396 0.604 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 3.054 -17.813 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.079 4.079 3 C -0.202 4.202 4 C -0.199 4.199 5 C 0.313 3.687 6 O -0.392 6.392 7 N -0.306 5.306 8 O -0.115 6.115 9 C -0.011 4.011 10 C -0.002 4.002 11 C -0.515 4.515 12 H 0.098 0.902 13 C -0.124 4.124 14 N -0.529 5.529 15 Si 0.694 3.306 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.174 1.174 19 C -0.212 4.212 20 C -0.218 4.218 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.235 0.765 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.310 2.724 -16.934 17.306 hybrid contribution 1.428 0.986 -0.565 1.824 sum -0.883 3.710 -17.498 17.909 Atomic orbital electron populations 1.21672 0.91472 1.03146 1.02167 1.20787 0.98218 0.96176 0.92713 1.21929 1.01195 0.93853 1.03207 1.21900 1.01219 1.00899 0.95871 1.20535 0.80291 0.80454 0.87428 1.90731 1.54539 1.47936 1.45999 1.47703 1.06381 1.52382 1.24161 1.90812 1.22911 1.62501 1.35309 1.22920 0.80380 1.00437 0.97337 1.19181 0.96143 0.90430 0.94436 1.20248 1.26451 1.07542 0.97269 0.90222 1.24947 0.96022 0.96782 0.94693 1.69896 1.41749 1.23483 1.17733 0.87049 0.83135 0.80765 0.79668 1.20732 1.21549 1.17404 1.22799 1.02550 0.95505 1.00348 1.23093 0.91052 1.06184 1.01486 0.91616 0.91894 0.91680 0.92235 0.91149 0.91563 0.91712 0.91235 0.92190 0.76515 0.93181 0.94324 0.92527 0.89288 0.90739 0.91164 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.76 37.16 0.29 -1.13 16 2 C -0.08 -0.88 0.87 -155.66 -0.14 -1.02 16 3 C -0.14 -1.39 8.37 37.16 0.31 -1.08 16 4 C -0.14 -1.27 8.38 37.16 0.31 -0.96 16 5 C 0.53 9.29 6.62 -10.98 -0.07 9.22 16 6 O -0.52 -11.81 16.39 -12.57 -0.21 -12.01 16 7 N -0.61 -10.76 6.16 31.22 0.19 -10.57 16 8 O -0.11 -2.59 11.04 -29.60 -0.33 -2.92 16 9 C 0.07 1.43 5.69 37.16 0.21 1.64 16 10 C 0.00 0.01 1.06 -155.66 -0.16 -0.15 16 11 C -0.48 -13.80 9.32 -34.44 -0.32 -14.12 16 12 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 13 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 14 N -0.89 -27.75 13.96 55.43 0.77 -26.98 16 15 Si 0.87 21.08 25.01 -169.99 -4.25 16.83 16 16 H -0.28 -6.70 6.94 56.52 0.39 -6.30 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.25 -5.57 5.76 56.52 0.33 -5.25 16 19 C -0.17 -3.62 9.96 -26.69 -0.27 -3.88 16 20 C -0.18 -3.70 8.04 -26.70 -0.21 -3.92 16 21 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 24 H 0.06 0.53 7.46 -51.93 -0.39 0.14 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 30 H 0.40 5.34 7.41 -40.82 -0.30 5.04 16 31 H 0.05 1.11 5.01 -51.93 -0.26 0.85 16 32 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -34.95 305.41 -5.43 -40.37 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.06 Total: 3.90 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.15 Total: -13.22 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.97 Total: -37.55 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.53 Total: -14.93 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.25 Total: 16.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.95 -5.43 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853665064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.579 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds