Wall clock time and date at job start Sun Mar 29 2020 23:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46932 * 2 1 4 4 C 1.52995 * 109.46969 * 240.00019 * 2 1 3 5 5 C 1.50699 * 109.46684 * 120.00001 * 2 1 3 6 6 O 1.21273 * 120.00520 * 0.02562 * 5 2 1 7 7 N 1.34781 * 119.99425 * 180.02562 * 5 2 1 8 8 O 1.41597 * 119.99655 * 185.04515 * 7 5 2 9 9 C 1.42900 * 114.00061 * 185.23285 * 8 7 5 10 10 C 1.52996 * 109.47429 * 184.37355 * 9 8 7 11 11 C 1.50706 * 115.55198 * 295.02018 * 10 9 8 12 12 H 1.07994 * 119.99962 * 114.72622 * 11 10 9 13 13 C 1.37882 * 119.99779 * 294.45167 * 11 10 9 14 14 N 1.31512 * 119.99861 * 174.42488 * 13 11 10 15 15 Si 1.86805 * 119.99814 * 354.42517 * 13 11 10 16 16 H 1.48497 * 109.46948 * 91.08684 * 15 13 11 17 17 H 1.48499 * 109.46584 * 211.08585 * 15 13 11 18 18 H 1.48503 * 109.47081 * 331.08684 * 15 13 11 19 19 C 1.53001 * 117.49976 * 80.68797 * 10 9 8 20 20 C 1.52998 * 117.50068 * 149.34657 * 10 9 8 21 21 H 1.08999 * 109.47232 * 300.00035 * 1 2 3 22 22 H 1.09001 * 109.47005 * 59.99904 * 1 2 3 23 23 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46632 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47354 * 299.99883 * 3 2 1 26 26 H 1.08999 * 109.47191 * 59.99940 * 3 2 1 27 27 H 1.08995 * 109.47184 * 299.99853 * 4 2 1 28 28 H 1.09001 * 109.47194 * 60.00192 * 4 2 1 29 29 H 1.09007 * 109.47027 * 179.97438 * 4 2 1 30 30 H 0.96999 * 120.00219 * 5.04233 * 7 5 2 31 31 H 1.09004 * 109.47023 * 64.37290 * 9 8 7 32 32 H 1.08995 * 109.47302 * 304.37362 * 9 8 7 33 33 H 0.96994 * 119.99803 * 180.02562 * 14 13 11 34 34 H 1.08998 * 117.50192 * 215.00575 * 19 10 9 35 35 H 1.09002 * 117.49601 * 0.02562 * 19 10 9 36 36 H 1.08998 * 117.49799 * 359.97438 * 20 10 9 37 37 H 1.09008 * 117.50251 * 144.97550 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1717 2.0285 7 7 3.3574 -0.8331 1.4440 8 8 3.8303 -1.5916 2.5422 9 6 5.2476 -1.5401 2.7170 10 6 5.6554 -2.4759 3.8566 11 6 5.1450 -2.0970 5.2230 12 1 4.4425 -2.7386 5.7341 13 6 5.5793 -0.9340 5.8231 14 7 5.0532 -0.5470 6.9646 15 14 6.9148 0.0917 5.0146 16 1 6.2911 1.1042 4.1253 17 1 7.7140 0.7776 6.0616 18 1 7.8010 -0.7913 4.2144 19 6 5.7778 -3.9671 3.5368 20 6 7.0365 -3.1291 3.7745 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7208 -1.2495 30 1 3.9871 -0.4018 0.8454 31 1 5.5469 -0.5204 2.9594 32 1 5.7390 -1.8537 1.7960 33 1 5.3585 0.2713 7.3865 34 1 5.4892 -4.6740 4.3145 35 1 5.5683 -4.2813 2.5143 36 1 7.6544 -2.8924 2.9084 37 1 7.5762 -3.2844 4.7088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853665064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:39 Heat of formation + Delta-G solvation = -40.977632 kcal Electronic energy + Delta-G solvation = -17897.780087 eV Core-core repulsion = 15063.063243 eV Total energy + Delta-G solvation = -2834.716844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04100 -39.30827 -37.37451 -36.61517 -34.32037 -32.95829 -28.63081 -28.22858 -28.00187 -26.96563 -24.17409 -23.22934 -21.31778 -20.41369 -19.03932 -18.33874 -17.67885 -17.21429 -16.40727 -16.10857 -15.65909 -15.52607 -14.86632 -14.83033 -14.54168 -14.28982 -13.87725 -13.31563 -13.06847 -13.00471 -12.96803 -12.92531 -12.64078 -12.28080 -12.16875 -11.98672 -11.93251 -11.89719 -11.56366 -11.00716 -10.86739 -10.65375 -10.43775 -9.86907 -8.32157 -6.39336 0.90951 1.27361 1.35374 1.48229 1.58039 2.33723 2.91338 3.15861 3.39329 3.75694 3.80069 3.89709 3.98071 4.13927 4.20683 4.25875 4.39262 4.62694 4.70996 4.72296 4.81659 4.85853 4.93658 4.94172 4.99209 4.99798 5.19788 5.22959 5.33700 5.35761 5.46024 5.62795 5.88630 6.24936 6.32741 6.65858 7.26811 7.29263 8.85026 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.006702 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.007374 B = 4176.626980 C = 4438.105054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.138 4.138 5 C 0.517 3.483 6 O -0.584 6.584 7 N -0.592 5.592 8 O -0.164 6.164 9 C 0.073 3.927 10 C -0.040 4.040 11 C -0.488 4.488 12 H 0.015 0.985 13 C 0.011 3.989 14 N -0.954 5.954 15 Si 0.940 3.060 16 H -0.270 1.270 17 H -0.293 1.293 18 H -0.207 1.207 19 C -0.168 4.168 20 C -0.154 4.154 21 H 0.042 0.958 22 H 0.103 0.897 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.419 0.581 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.266 0.734 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 4.216 -22.408 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.462 6.462 7 N -0.294 5.294 8 O -0.168 6.168 9 C -0.004 4.004 10 C -0.043 4.043 11 C -0.526 4.526 12 H 0.033 0.967 13 C -0.186 4.186 14 N -0.593 5.593 15 Si 0.762 3.238 16 H -0.196 1.196 17 H -0.220 1.220 18 H -0.129 1.129 19 C -0.205 4.205 20 C -0.192 4.192 21 H 0.061 0.939 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.125 0.875 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.063 3.869 -21.578 21.922 hybrid contribution 0.546 0.532 0.904 1.183 sum 0.609 4.401 -20.674 21.146 Atomic orbital electron populations 1.21730 0.91417 1.02418 1.03007 1.20927 0.98194 0.97090 0.90624 1.21992 1.02026 0.92027 1.04064 1.21946 1.02119 1.00253 0.95246 1.22013 0.79585 0.79420 0.88441 1.90701 1.56080 1.50776 1.48613 1.47810 1.07036 1.51700 1.22847 1.90778 1.24226 1.63909 1.37912 1.22811 0.80024 0.99305 0.98243 1.19160 0.99395 0.93091 0.92607 1.20426 1.25246 1.06857 1.00060 0.96709 1.26026 0.98980 0.98367 0.95206 1.70097 1.44356 1.24542 1.20303 0.85900 0.79770 0.79160 0.78921 1.19624 1.21955 1.12891 1.22859 1.02645 0.93462 1.01553 1.23145 0.89921 1.03256 1.02845 0.93862 0.87852 0.93291 0.91007 0.87524 0.93508 0.92859 0.87797 0.90834 0.73875 0.93965 0.89351 0.92569 0.91007 0.87587 0.86700 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 7.76 71.98 0.56 -2.15 16 2 C -0.06 -1.37 0.87 -52.93 -0.05 -1.42 16 3 C -0.14 -2.29 8.37 71.98 0.60 -1.68 16 4 C -0.14 -1.94 8.38 71.98 0.60 -1.34 16 5 C 0.52 18.13 6.62 87.66 0.58 18.71 16 6 O -0.58 -27.86 16.39 14.33 0.23 -27.63 16 7 N -0.59 -20.18 6.16 -173.54 -1.07 -21.25 16 8 O -0.16 -7.54 11.04 -21.44 -0.24 -7.78 16 9 C 0.07 2.94 5.69 71.98 0.41 3.34 16 10 C -0.04 -1.87 1.06 -52.93 -0.06 -1.92 16 11 C -0.49 -29.54 9.32 25.60 0.24 -29.30 16 12 H 0.01 1.03 8.06 -2.91 -0.02 1.00 16 13 C 0.01 0.66 5.47 84.66 0.46 1.12 16 14 N -0.95 -62.70 13.96 21.45 0.30 -62.40 16 15 Si 0.94 43.17 25.01 68.60 1.72 44.88 16 16 H -0.27 -11.88 6.94 99.48 0.69 -11.19 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.21 -7.99 5.76 99.48 0.57 -7.41 16 19 C -0.17 -6.66 9.96 30.62 0.30 -6.35 16 20 C -0.15 -5.75 8.04 30.62 0.25 -5.50 16 21 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 22 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.05 1.17 8.10 -2.39 -0.02 1.16 16 24 H 0.07 0.97 7.46 -2.39 -0.02 0.95 16 25 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.85 7.69 -2.38 -0.02 0.83 16 30 H 0.42 9.91 7.41 -92.71 -0.69 9.22 16 31 H 0.04 1.73 5.01 -2.38 -0.01 1.72 16 32 H 0.09 2.64 8.09 -2.39 -0.02 2.62 16 33 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 Total: -1.00 -85.12 305.41 5.06 -80.06 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.21 Total: 20.60 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 3.90 Total: -26.49 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -0.77 Total: -83.65 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: 0.00 Total: -35.40 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.72 Total: 44.88 kcal Total: -85.12 5.06 -80.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853665064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.083 kcal (2) G-P(sol) polarization free energy of solvation -85.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds