Wall clock time and date at job start Sun Mar 29 2020 23:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 H 1.09003 * 109.46749 * 55.94611 * 3 2 1 5 5 C 1.50699 * 109.47293 * 175.94818 * 3 2 1 6 6 H 1.07990 * 119.99815 * 115.05831 * 5 3 2 7 7 C 1.37873 * 119.99667 * 295.05650 * 5 3 2 8 8 N 1.31521 * 120.00425 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99793 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47073 * 90.00469 * 9 7 5 11 11 H 1.48507 * 109.47395 * 209.99770 * 9 7 5 12 12 H 1.48498 * 109.47558 * 330.00203 * 9 7 5 13 13 N 1.46903 * 109.47077 * 295.94755 * 3 2 1 14 14 C 1.46904 * 110.99796 * 132.51972 * 13 3 2 15 15 C 1.50697 * 112.84677 * 65.53619 * 14 13 3 16 16 O 1.20829 * 120.00049 * 144.41111 * 15 14 13 17 17 O 1.34226 * 120.00371 * 324.40346 * 15 14 13 18 18 C 1.45193 * 117.00571 * 180.02562 * 17 15 14 19 19 C 1.53780 * 113.61752 * 294.33478 * 14 13 3 20 20 C 1.53955 * 87.02078 * 220.04982 * 19 14 13 21 21 C 1.53780 * 87.10958 * 25.36424 * 20 19 14 22 22 H 1.08999 * 109.47471 * 305.08381 * 1 2 3 23 23 H 1.09004 * 109.47111 * 65.08750 * 1 2 3 24 24 H 1.09004 * 109.47198 * 185.08337 * 1 2 3 25 25 H 1.09002 * 109.47009 * 240.00603 * 2 1 3 26 26 H 1.08999 * 109.47424 * 120.00193 * 2 1 3 27 27 H 0.96998 * 120.00360 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00176 * 256.47355 * 13 3 2 29 29 H 1.09000 * 109.47276 * 179.97438 * 18 17 15 30 30 H 1.08995 * 109.47551 * 300.00648 * 18 17 15 31 31 H 1.09003 * 109.46781 * 60.00316 * 18 17 15 32 32 H 1.09000 * 113.61273 * 334.57209 * 19 14 13 33 33 H 1.09002 * 113.61173 * 105.46515 * 19 14 13 34 34 H 1.09004 * 113.53652 * 270.81133 * 20 19 14 35 35 H 1.08994 * 113.66397 * 139.93411 * 20 19 14 36 36 H 1.09006 * 113.61046 * 220.09097 * 21 20 19 37 37 H 1.08993 * 113.61531 * 89.19129 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6185 1.9769 0.8515 5 6 3.5437 1.4437 0.1004 6 1 4.1391 1.8202 -0.7181 7 6 4.1590 0.9642 1.2372 8 7 3.4338 0.5053 2.2338 9 14 6.0228 0.9651 1.3614 10 1 6.4787 2.2474 1.9558 11 1 6.4622 -0.1630 2.2215 12 1 6.6094 0.8116 0.0058 13 7 1.6319 2.1062 -1.2454 14 6 1.0474 3.4258 -0.9716 15 6 2.0431 4.3982 -0.3937 16 8 1.9862 5.5685 -0.6892 17 8 2.9932 3.9645 0.4495 18 6 3.9178 4.9569 0.9677 19 6 -0.2766 3.3635 -0.1919 20 6 -0.7756 4.4970 -1.1065 21 6 0.2394 3.9979 -2.1483 22 1 -0.3634 0.5907 0.8409 23 1 -0.3633 0.4329 -0.9321 24 1 -0.3634 -1.0236 0.0911 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8667 0.1676 3.0334 28 1 2.4074 2.1802 -1.8866 29 1 4.6317 4.4746 1.6354 30 1 4.4517 5.4234 0.1399 31 1 3.3636 5.7177 1.5174 32 1 -0.8171 2.4262 -0.3237 33 1 -0.1815 3.6549 0.8541 34 1 -0.5548 5.4937 -0.7244 35 1 -1.8136 4.3825 -1.4185 36 1 0.7505 4.8009 -2.6795 37 1 -0.1598 3.2344 -2.8160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:53 Heat of formation + Delta-G solvation = -65.157233 kcal Electronic energy + Delta-G solvation = -19076.013939 eV Core-core repulsion = 16240.248589 eV Total energy + Delta-G solvation = -2835.765350 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43507 -37.85899 -35.87889 -34.76077 -31.85915 -30.65063 -27.39858 -26.46101 -25.38469 -24.13812 -22.63284 -21.39274 -19.43148 -18.63926 -17.07601 -16.49125 -15.85771 -15.63486 -14.89354 -14.58882 -14.14941 -13.66506 -13.02935 -12.87893 -12.62496 -12.46787 -12.00438 -11.58832 -11.41117 -11.30008 -11.04948 -11.02203 -10.82309 -10.67508 -10.46662 -10.31072 -10.02177 -9.95544 -9.80009 -9.50987 -9.40703 -8.95406 -8.35160 -7.46448 -5.96465 -3.98722 2.79327 3.25637 3.35192 3.37683 3.43556 4.43042 4.91294 4.96357 5.15356 5.20476 5.37013 5.40939 5.66484 5.71992 5.75341 6.02674 6.09884 6.15033 6.21907 6.28803 6.36979 6.44700 6.50961 6.65524 6.66173 7.08869 7.13670 7.16353 7.44891 7.51054 7.80826 8.02721 8.06414 8.25720 8.45109 8.63209 9.04515 9.62124 11.09212 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.011281 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.377535 B = 2481.442111 C = 3349.645192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.039 0.961 5 C -0.504 4.504 6 H 0.051 0.949 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.659 5.659 14 C 0.097 3.903 15 C 0.447 3.553 16 O -0.536 6.536 17 O -0.290 6.290 18 C 0.033 3.967 19 C -0.111 4.111 20 C -0.145 4.145 21 C -0.108 4.108 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.259 0.741 28 H 0.334 0.666 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 4.782 -3.874 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.543 4.543 6 H 0.069 0.931 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.290 5.290 14 C 0.002 3.998 15 C 0.289 3.711 16 O -0.427 6.427 17 O -0.202 6.202 18 C -0.062 4.062 19 C -0.148 4.148 20 C -0.182 4.182 21 C -0.146 4.146 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.363 4.705 -3.764 8.066 hybrid contribution 2.224 0.705 0.560 2.400 sum -3.139 5.410 -3.204 7.027 Atomic orbital electron populations 1.21791 0.99256 0.98511 1.00157 1.21479 0.91923 0.99428 1.01190 1.19226 0.93711 0.90692 0.85527 0.94351 1.21472 0.91570 1.39879 1.01394 0.93081 1.24783 0.97209 0.95537 0.95751 1.69899 1.34562 1.42207 1.06000 0.86791 0.86928 0.77426 0.77893 1.21025 1.21398 1.20120 1.61226 1.37037 1.13485 1.17209 1.22177 0.91652 0.88622 0.97317 1.24866 0.81247 0.88634 0.76400 1.90537 1.72979 1.19619 1.59523 1.87257 1.38941 1.38250 1.55773 1.23128 0.92488 0.91953 0.98602 1.23042 0.93749 0.99962 0.98093 1.22878 0.98865 0.98840 0.97662 1.22892 0.96173 0.99974 0.95554 0.94353 0.93395 0.95569 0.94768 0.90074 0.93147 0.84786 0.88680 0.93060 0.93182 0.87606 0.91768 0.90082 0.91170 0.91193 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.80 37.16 0.33 -2.35 16 2 C -0.10 -2.30 5.48 -26.73 -0.15 -2.45 16 3 C 0.22 4.99 1.09 -68.86 -0.08 4.92 16 4 H 0.04 1.00 6.49 -51.93 -0.34 0.66 16 5 C -0.50 -12.81 6.15 -34.44 -0.21 -13.02 16 6 H 0.05 1.32 7.40 -52.49 -0.39 0.93 16 7 C 0.07 1.80 5.31 -17.82 -0.09 1.71 16 8 N -0.89 -24.26 11.68 55.43 0.65 -23.62 16 9 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.66 -13.11 5.73 -94.59 -0.54 -13.66 16 14 C 0.10 1.78 0.98 -131.94 -0.13 1.65 16 15 C 0.45 9.18 7.04 36.00 0.25 9.44 16 16 O -0.54 -11.33 15.11 -18.75 -0.28 -11.61 16 17 O -0.29 -6.33 6.54 -39.25 -0.26 -6.59 16 18 C 0.03 0.60 10.56 101.05 1.07 1.67 16 19 C -0.11 -1.85 6.47 -25.83 -0.17 -2.02 16 20 C -0.14 -2.09 7.70 -25.83 -0.20 -2.29 16 21 C -0.11 -1.66 7.23 -25.92 -0.19 -1.85 16 22 H 0.04 0.73 7.79 -51.93 -0.40 0.33 16 23 H 0.05 0.86 7.24 -51.93 -0.38 0.48 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 2.07 6.39 -51.93 -0.33 1.74 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.33 6.76 7.99 -39.29 -0.31 6.44 16 29 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 31 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.11 1.72 6.07 -51.93 -0.32 1.40 16 33 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 34 H 0.08 1.24 7.61 -51.93 -0.40 0.85 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -27.64 294.71 -6.35 -33.99 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.77 Total: 6.07 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 0.44 Total: -4.60 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.11 Total: -37.27 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.54 Total: -18.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.64 -6.35 -33.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.168 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds