Wall clock time and date at job start Sun Mar 29 2020 22:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00010 * 2 1 4 4 C 1.52993 * 109.50713 * 59.91726 * 3 2 1 5 5 C 1.53129 * 109.46755 * 299.81666 * 3 2 1 6 6 C 1.53123 * 109.15931 * 297.65834 * 5 3 2 7 7 C 1.53039 * 109.31189 * 302.40768 * 6 5 3 8 8 N 1.46842 * 109.52266 * 59.15550 * 7 6 5 9 9 C 1.46910 * 110.99703 * 174.16402 * 8 7 6 10 10 C 1.53001 * 109.47153 * 66.04611 * 9 8 7 11 11 C 1.53003 * 109.46899 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.46799 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00554 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00201 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00041 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46913 * 90.00156 * 16 14 12 18 18 H 1.48499 * 109.47043 * 210.00174 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00243 * 16 14 12 20 20 C 1.46849 * 111.20050 * 298.25785 * 8 7 6 21 21 H 1.09004 * 109.47357 * 300.00655 * 1 2 3 22 22 H 1.09007 * 109.47207 * 60.00485 * 1 2 3 23 23 H 1.09000 * 109.47762 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46813 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47449 * 300.07878 * 4 3 2 26 26 H 1.08996 * 109.47321 * 60.08113 * 4 3 2 27 27 H 1.09000 * 109.49266 * 177.77525 * 5 3 2 28 28 H 1.08995 * 109.55725 * 57.58271 * 5 3 2 29 29 H 1.09002 * 109.50371 * 182.44317 * 6 5 3 30 30 H 1.09003 * 109.50070 * 62.36477 * 6 5 3 31 31 H 1.08995 * 109.46501 * 179.17754 * 7 6 5 32 32 H 1.09002 * 109.45552 * 299.15457 * 7 6 5 33 33 H 1.08996 * 109.46709 * 186.04933 * 9 8 7 34 34 H 1.09002 * 109.46552 * 306.04948 * 9 8 7 35 35 H 1.08995 * 109.47022 * 300.00315 * 10 9 8 36 36 H 1.09001 * 109.46710 * 59.99819 * 10 9 8 37 37 H 1.08996 * 109.46893 * 300.00280 * 11 10 9 38 38 H 1.09002 * 109.46622 * 60.00450 * 11 10 9 39 39 H 0.97001 * 120.00639 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46071 * 181.75754 * 20 8 7 41 41 H 1.08995 * 109.46417 * 301.72694 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5576 2.0661 1.2479 5 6 1.5620 2.0636 -1.2526 6 6 2.0712 1.3273 -2.4949 7 6 3.5951 1.2065 -2.4225 8 7 3.9721 0.4728 -1.2077 9 6 5.4184 0.2172 -1.1745 10 6 6.1681 1.5447 -1.0454 11 6 7.6743 1.2784 -1.0103 12 6 8.4127 2.5858 -0.8825 13 1 7.8628 3.5139 -0.8319 14 6 9.7905 2.5973 -0.8313 15 7 10.4349 3.7382 -0.7193 16 14 10.7418 0.9921 -0.9196 17 1 11.0449 0.6738 -2.3381 18 1 12.0109 1.1265 -0.1604 19 1 9.9259 -0.0999 -0.3306 20 6 3.5359 1.1854 0.0000 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 2.0010 3.0619 1.2470 25 1 0.4710 2.1514 1.2473 26 1 1.8793 1.5269 2.1388 27 1 1.9731 3.0729 -1.2334 28 1 0.4735 2.1131 -1.2792 29 1 1.7924 1.8855 -3.3886 30 1 1.6288 0.3319 -2.5347 31 1 3.9589 0.6698 -3.2986 32 1 4.0374 2.2025 -2.3971 33 1 5.6555 -0.4185 -0.3215 34 1 5.7201 -0.2824 -2.0951 35 1 5.9309 2.1804 -1.8985 36 1 5.8662 2.0444 -0.1249 37 1 7.9111 0.6428 -0.1570 38 1 7.9764 0.7785 -1.9307 39 1 11.4041 3.7464 -0.6829 40 1 3.8567 0.6332 0.8833 41 1 3.9785 2.1813 0.0139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230265327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:23 Heat of formation + Delta-G solvation = -78.541237 kcal Electronic energy + Delta-G solvation = -18305.195869 eV Core-core repulsion = 15604.683240 eV Total energy + Delta-G solvation = -2700.512629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01454 -38.36350 -35.83760 -34.43817 -32.78650 -32.50861 -28.90520 -27.92898 -27.20715 -25.68368 -23.52802 -22.61575 -21.69991 -20.22431 -18.91313 -17.38237 -16.64684 -16.52018 -16.23437 -16.15046 -15.71590 -15.25735 -15.18796 -14.67045 -14.23980 -14.08102 -13.78986 -13.50462 -13.39747 -12.99761 -12.93844 -12.82403 -12.72994 -12.31937 -12.21469 -11.83113 -11.79067 -11.74688 -11.55805 -11.40636 -11.32036 -10.98903 -10.77809 -10.29327 -9.10240 -8.31372 -6.35997 1.35327 1.37323 1.49874 2.35296 2.87632 3.04038 3.05564 3.72134 3.82649 3.98048 4.09184 4.22293 4.24978 4.34674 4.47944 4.53945 4.57063 4.59264 4.66076 4.67766 4.75805 4.79526 4.83940 4.91667 4.96603 5.00659 5.03968 5.06129 5.08248 5.20893 5.30583 5.39439 5.47374 5.54265 5.64273 6.11950 6.19349 6.28042 6.50021 6.71607 7.29001 8.85609 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041463 B = 0.004811 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.137599 B = 5818.663589 C = 5882.601773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.382 6.382 3 C 0.120 3.880 4 C -0.176 4.176 5 C -0.145 4.145 6 C -0.105 4.105 7 C 0.047 3.953 8 N -0.528 5.528 9 C 0.061 3.939 10 C -0.125 4.125 11 C -0.008 4.008 12 C -0.534 4.534 13 H 0.026 0.974 14 C 0.003 3.997 15 N -0.953 5.953 16 Si 0.954 3.046 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.246 1.246 20 C 0.065 3.935 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.267 0.733 40 H 0.071 0.929 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.572 -7.521 -0.190 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.301 6.301 3 C 0.080 3.920 4 C -0.233 4.233 5 C -0.183 4.183 6 C -0.143 4.143 7 C -0.080 4.080 8 N -0.250 5.250 9 C -0.067 4.067 10 C -0.165 4.165 11 C -0.046 4.046 12 C -0.572 4.572 13 H 0.044 0.956 14 C -0.194 4.194 15 N -0.594 5.594 16 Si 0.777 3.223 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.169 1.169 20 C -0.063 4.063 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.560 -8.078 -0.192 23.024 hybrid contribution 1.231 1.053 0.084 1.622 sum -20.329 -7.025 -0.108 21.508 Atomic orbital electron populations 1.22932 0.81002 1.03214 1.00652 1.88057 1.20148 1.26952 1.94976 1.21494 0.92028 0.83756 0.94739 1.22364 1.02762 1.00833 0.97389 1.22203 1.02080 0.99194 0.94797 1.21460 0.93763 1.01253 0.97795 1.22184 0.96913 0.96110 0.92839 1.62221 1.13604 1.47106 1.02113 1.22226 0.85863 0.95874 1.02779 1.21930 0.96009 0.98386 1.00136 1.19452 0.93574 0.95033 0.96520 1.21507 0.92085 0.93537 1.50108 0.95570 1.26065 0.98981 1.00331 0.93991 1.70075 1.08714 1.28202 1.52395 0.85606 0.77779 0.79820 0.79139 1.19014 1.20895 1.16893 1.22097 0.93578 0.97066 0.93607 0.93163 0.93222 0.89209 0.91259 0.90303 0.91947 0.91347 0.89616 0.90124 0.91207 0.90614 0.95826 0.90806 0.90359 0.93718 0.93657 0.96145 0.96201 0.92468 0.91071 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.22 113.37 1.16 1.45 16 2 O -0.38 -9.29 9.68 -148.98 -1.44 -10.73 16 3 C 0.12 2.74 0.73 -10.74 -0.01 2.73 16 4 C -0.18 -3.31 8.26 71.98 0.59 -2.72 16 5 C -0.15 -2.91 4.50 30.68 0.14 -2.78 16 6 C -0.11 -2.26 5.94 30.65 0.18 -2.08 16 7 C 0.05 1.28 5.05 86.33 0.44 1.72 16 8 N -0.53 -15.82 4.74 -896.35 -4.25 -20.07 16 9 C 0.06 2.00 5.36 86.30 0.46 2.46 16 10 C -0.13 -5.05 4.45 30.60 0.14 -4.92 16 11 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 12 C -0.53 -31.77 9.66 25.60 0.25 -31.52 16 13 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 14 C 0.00 0.17 5.47 84.65 0.46 0.63 16 15 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 16 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 20 C 0.06 1.85 3.81 86.32 0.33 2.17 16 21 H 0.05 0.70 6.42 -2.39 -0.02 0.68 16 22 H 0.05 0.71 6.37 -2.38 -0.02 0.69 16 23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.18 6.54 -2.39 -0.02 1.16 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.37 6.43 -2.39 -0.02 1.36 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.57 7.80 -2.39 -0.02 1.55 16 31 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 32 H 0.02 0.71 6.75 -2.39 -0.02 0.69 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.46 8.06 -2.39 -0.02 2.45 16 35 H 0.04 1.85 6.68 -2.39 -0.02 1.83 16 36 H 0.04 1.88 6.51 -2.39 -0.02 1.86 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 41 H 0.04 1.30 6.61 -2.39 -0.02 1.28 16 Total: -1.00 -67.94 308.35 1.67 -66.27 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.92 Total: 11.39 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.26 Total: -33.09 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.95 Total: -80.75 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.44 Total: -10.73 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -67.94 1.67 -66.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230265327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.274 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds