Wall clock time and date at job start Sun Mar 29 2020 22:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48502 * 109.46864 * 85.30837 * 3 2 1 5 5 H 1.48496 * 109.47137 * 325.31099 * 3 2 1 6 6 H 1.48500 * 109.47302 * 205.30418 * 3 2 1 7 7 C 1.37876 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00223 * 173.60996 * 7 2 1 9 9 C 1.50703 * 119.99857 * 353.61367 * 7 2 1 10 10 C 1.53002 * 115.55108 * 85.12488 * 9 7 2 11 11 N 1.46896 * 109.47203 * 54.34372 * 10 9 7 12 12 C 1.46841 * 110.99965 * 52.03644 * 11 10 9 13 13 C 1.53043 * 109.52379 * 185.83795 * 12 11 10 14 14 C 1.53110 * 109.27928 * 300.81987 * 13 12 11 15 15 C 1.53121 * 109.16010 * 57.65320 * 14 13 12 16 16 H 1.08995 * 109.50740 * 62.28839 * 15 14 13 17 17 C 1.53009 * 109.53533 * 182.38633 * 15 14 13 18 18 F 1.39893 * 109.46991 * 184.82079 * 17 15 14 19 19 C 1.46852 * 111.00053 * 176.24364 * 11 10 9 20 20 C 1.53004 * 117.49850 * 299.45524 * 9 7 2 21 21 C 1.53003 * 117.49754 * 230.79295 * 9 7 2 22 22 H 0.96999 * 120.00146 * 174.69615 * 1 2 3 23 23 H 1.09000 * 109.46950 * 174.34638 * 10 9 7 24 24 H 1.09001 * 109.46867 * 294.34395 * 10 9 7 25 25 H 1.08999 * 109.46578 * 305.85256 * 12 11 10 26 26 H 1.09000 * 109.46370 * 65.82135 * 12 11 10 27 27 H 1.09000 * 109.50006 * 180.87331 * 13 12 11 28 28 H 1.09003 * 109.53566 * 60.78564 * 13 12 11 29 29 H 1.09001 * 109.52123 * 297.75200 * 14 13 12 30 30 H 1.08995 * 109.52566 * 177.55703 * 14 13 12 31 31 H 1.08994 * 109.46803 * 304.82352 * 17 15 14 32 32 H 1.08998 * 109.47102 * 64.82277 * 17 15 14 33 33 H 1.09000 * 109.46095 * 294.17862 * 19 11 10 34 34 H 1.09004 * 109.45699 * 54.14628 * 19 11 10 35 35 H 1.09003 * 117.49651 * 359.97438 * 20 9 7 36 36 H 1.08997 * 117.50114 * 145.02601 * 20 9 7 37 37 H 1.09001 * 117.49430 * 214.97532 * 21 9 7 38 38 H 1.09000 * 117.49877 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3974 2.1036 1.3954 5 1 1.4996 2.6220 -0.7968 6 1 3.5927 1.4136 -0.5984 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1046 9 6 1.2580 -2.4952 0.1441 10 6 0.6973 -3.0820 -1.1530 11 7 1.7785 -3.2128 -2.1388 12 6 2.9215 -3.9404 -1.5727 13 6 4.0798 -3.9311 -2.5729 14 6 3.6263 -4.5914 -3.8778 15 6 2.4052 -3.8442 -4.4211 16 1 2.6802 -2.8143 -4.6485 17 6 1.9084 -4.5330 -5.6939 18 9 0.8628 -3.7880 -6.2495 19 6 1.2955 -3.8560 -3.3674 20 6 0.4457 -2.7052 1.4235 21 6 1.7500 -3.4773 1.2091 22 1 -0.4850 -0.8364 -0.0776 23 1 0.2681 -4.0635 -0.9519 24 1 -0.0752 -2.4213 -1.5465 25 1 3.2369 -3.4582 -0.6474 26 1 2.6298 -4.9698 -1.3644 27 1 4.9226 -4.4845 -2.1588 28 1 4.3820 -2.9028 -2.7712 29 1 3.3617 -5.6314 -3.6869 30 1 4.4343 -4.5482 -4.6080 31 1 2.7257 -4.6035 -6.4114 32 1 1.5518 -5.5337 -5.4498 33 1 1.0113 -4.8858 -3.1507 34 1 0.4297 -3.3124 -3.7456 35 1 0.4516 -1.9024 2.1609 36 1 -0.4878 -3.2618 1.3414 37 1 1.6738 -4.5415 0.9858 38 1 2.6139 -3.1826 1.8048 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711414658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:19 Heat of formation + Delta-G solvation = -41.754461 kcal Electronic energy + Delta-G solvation = -18326.198751 eV Core-core repulsion = 15503.821011 eV Total energy + Delta-G solvation = -2822.377740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.51358 -38.89054 -36.63173 -33.05819 -31.73236 -31.28971 -26.53544 -25.82683 -24.70693 -22.53722 -21.66445 -21.11655 -19.47766 -19.11330 -16.55676 -15.94268 -15.73019 -15.47540 -14.55440 -14.41414 -13.87957 -13.85646 -13.65609 -13.44260 -12.75732 -12.49622 -12.32023 -12.18863 -11.57874 -11.27429 -11.05185 -10.72935 -10.67415 -10.63269 -10.45435 -10.39734 -10.13670 -10.06049 -10.00956 -9.32336 -8.40487 -8.39571 -8.18108 -7.45882 -6.19616 -3.90712 3.50209 3.54746 3.69324 4.34479 4.62175 4.67267 4.83683 4.93648 5.01803 5.18715 5.22229 5.45946 5.47435 5.63418 5.65399 5.73393 5.84103 5.92056 5.98725 6.04701 6.13427 6.20211 6.26078 6.35615 6.38486 6.43946 6.56299 6.58226 6.67179 6.85003 6.93874 7.28913 7.32661 7.86690 7.95476 8.40219 8.56496 9.01444 9.80694 11.18929 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.007651 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.850497 B = 3658.590543 C = 3988.061430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 1.067 2.933 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.030 3.970 10 C 0.100 3.900 11 N -0.508 5.508 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.118 4.118 16 H 0.092 0.908 17 C 0.068 3.932 18 F -0.218 7.218 19 C 0.061 3.939 20 C -0.179 4.179 21 C -0.202 4.202 22 H 0.272 0.728 23 H -0.001 1.001 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.012 0.988 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -9.904 -7.304 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.028 4.028 11 N -0.232 5.232 12 C -0.069 4.069 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.137 4.137 16 H 0.110 0.890 17 C 0.013 3.987 18 F -0.199 7.199 19 C -0.068 4.068 20 C -0.218 4.218 21 C -0.239 4.239 22 H 0.083 0.917 23 H 0.017 0.983 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.431 -7.761 -7.372 12.003 hybrid contribution -0.229 -2.569 0.138 2.583 sum 5.202 -10.329 -7.234 13.642 Atomic orbital electron populations 1.70684 1.06848 1.31079 1.46035 1.25631 0.96535 1.02008 0.93679 0.83575 0.74783 0.75535 0.76445 1.21836 1.21389 1.21573 1.21101 0.93734 0.89307 1.54052 0.93050 1.19119 0.97692 0.95207 0.85039 1.21742 0.92201 0.95804 0.93027 1.61657 1.07711 1.49450 1.04353 1.22120 0.91187 0.94851 0.98745 1.21576 0.97602 1.01462 0.94708 1.21520 0.96562 0.98813 0.97912 1.21803 0.96402 1.01551 0.93908 0.88980 1.22041 0.87486 0.94203 0.94993 1.92762 1.60800 1.79371 1.87000 1.22042 0.96753 0.96427 0.91546 1.22787 0.92729 1.02106 1.04130 1.22965 0.98109 0.95313 1.07558 0.91708 0.98298 0.91268 0.88582 0.96941 0.92109 0.90819 0.92478 0.92039 0.90954 0.91288 0.96168 0.90849 0.89697 0.91877 0.92003 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.98 13.46 55.43 0.75 -26.23 16 2 C 0.03 0.73 5.39 -17.82 -0.10 0.64 16 3 Si 1.07 25.45 29.91 -169.99 -5.08 20.37 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.54 -14.75 8.05 -34.44 -0.28 -15.03 16 8 H 0.05 1.43 7.70 -52.49 -0.40 1.02 16 9 C 0.03 0.73 0.16 -155.65 -0.03 0.70 16 10 C 0.10 2.24 4.96 -3.83 -0.02 2.22 16 11 N -0.51 -10.30 4.45 -234.67 -1.04 -11.35 16 12 C 0.06 1.07 4.74 -3.83 -0.02 1.05 16 13 C -0.12 -1.72 6.09 -26.65 -0.16 -1.88 16 14 C -0.11 -1.38 5.29 -26.61 -0.14 -1.52 16 15 C -0.12 -1.66 2.65 -90.53 -0.24 -1.90 16 16 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.07 0.80 6.91 37.16 0.26 1.05 16 18 F -0.22 -3.22 17.05 2.25 0.04 -3.18 16 19 C 0.06 1.04 4.65 -3.83 -0.02 1.02 16 20 C -0.18 -4.16 8.90 -26.69 -0.24 -4.39 16 21 C -0.20 -4.34 8.14 -26.69 -0.22 -4.55 16 22 H 0.27 7.99 6.14 -40.82 -0.25 7.74 16 23 H 0.00 -0.02 8.08 -51.93 -0.42 -0.44 16 24 H 0.07 1.70 7.51 -51.93 -0.39 1.31 16 25 H 0.10 1.97 5.19 -51.93 -0.27 1.71 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 35 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -29.29 300.53 -8.45 -37.74 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.44 Total: 0.72 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.19 Total: -22.59 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.30 Total: -37.58 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.29 -8.45 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711414658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.016 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds