Wall clock time and date at job start Sun Mar 29 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00014 * 2 1 4 4 C 1.53004 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.70196 * 185.98166 * 4 3 2 6 6 C 1.53628 * 109.65895 * 306.57266 * 4 3 2 7 7 C 1.53043 * 109.23762 * 174.55066 * 6 4 3 8 8 C 1.53043 * 109.53435 * 298.50741 * 7 6 4 9 9 C 1.53187 * 109.31264 * 61.36826 * 8 7 6 10 10 N 1.46919 * 108.77670 * 305.36312 * 9 8 7 11 11 C 1.34780 * 120.63444 * 233.58864 * 10 9 8 12 12 O 1.21282 * 120.00554 * 174.84073 * 11 10 9 13 13 C 1.50707 * 119.99563 * 354.56403 * 11 10 9 14 14 C 1.50695 * 109.46876 * 180.27814 * 13 11 10 15 15 H 1.07997 * 120.00069 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99973 * 180.02562 * 14 13 11 17 17 N 1.31511 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00280 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46938 * 89.99944 * 18 16 14 20 20 H 1.48494 * 109.47255 * 210.00070 * 18 16 14 21 21 H 1.48505 * 109.46888 * 330.00133 * 18 16 14 22 22 H 1.08997 * 109.46727 * 60.00260 * 1 2 3 23 23 H 1.09001 * 109.46540 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46870 * 299.99914 * 1 2 3 25 25 H 1.09009 * 109.47148 * 59.99818 * 3 2 1 26 26 H 1.08999 * 109.47295 * 300.00342 * 3 2 1 27 27 H 1.08992 * 109.63707 * 54.55998 * 6 4 3 28 28 H 1.09005 * 109.45853 * 294.42620 * 6 4 3 29 29 H 1.09005 * 109.46117 * 178.49016 * 7 6 4 30 30 H 1.09003 * 109.45410 * 58.51848 * 7 6 4 31 31 H 1.08998 * 109.50010 * 301.41540 * 8 7 6 32 32 H 1.09001 * 109.52143 * 181.33207 * 8 7 6 33 33 H 1.08998 * 109.58764 * 185.57348 * 9 8 7 34 34 H 1.09003 * 109.70447 * 65.22053 * 9 8 7 35 35 H 1.08999 * 109.46725 * 300.27722 * 13 11 10 36 36 H 1.08997 * 109.47167 * 60.27352 * 13 11 10 37 37 H 0.97000 * 120.00184 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9823 2.1732 0.1076 6 6 3.9822 0.2848 1.1629 7 6 5.4935 0.0601 1.0745 8 6 5.8295 -0.6487 -0.2397 9 6 5.4026 0.2354 -1.4156 10 7 3.9819 0.5760 -1.2598 11 6 3.1058 0.3398 -2.2564 12 8 1.9219 0.5379 -2.0828 13 6 3.5980 -0.1646 -3.5885 14 6 2.4285 -0.3392 -4.5227 15 1 1.4288 -0.1085 -4.1854 16 6 2.6346 -0.7946 -5.8077 17 7 3.8519 -1.0760 -6.2182 18 14 1.1849 -1.0118 -6.9655 19 1 0.9565 0.2498 -7.7148 20 1 1.4755 -2.1099 -7.9220 21 1 -0.0298 -1.3480 -6.1801 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.4677 -0.6741 1.1023 28 1 3.7411 0.7681 2.1097 29 1 5.8187 -0.5561 1.9128 30 1 6.0062 1.0214 1.1100 31 1 5.2975 -1.5988 -0.2870 32 1 6.9031 -0.8298 -0.2917 33 1 5.5484 -0.3050 -2.3509 34 1 5.9984 1.1482 -1.4244 35 1 4.2980 0.5549 -4.0133 36 1 4.0998 -1.1224 -3.4515 37 1 3.9969 -1.3967 -7.1221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:17 Heat of formation + Delta-G solvation = -74.502081 kcal Electronic energy + Delta-G solvation = -18618.277278 eV Core-core repulsion = 15782.106705 eV Total energy + Delta-G solvation = -2836.170573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.83273 -36.71974 -36.61003 -32.97543 -32.26956 -31.70396 -28.67231 -26.99943 -25.46942 -24.04465 -23.51585 -21.46200 -20.41706 -18.18546 -16.56947 -16.10928 -15.88508 -15.06393 -14.76765 -14.58057 -14.53186 -14.02224 -13.79937 -13.46908 -13.10568 -12.57261 -12.37079 -11.96419 -11.84184 -11.60217 -11.16806 -11.04083 -10.85210 -10.71819 -10.64510 -10.51984 -10.41667 -10.20392 -9.84322 -9.14595 -8.98640 -8.38338 -8.05268 -7.73147 -6.00879 -3.99331 3.36814 3.42015 3.48679 3.70984 3.86269 4.41269 4.51652 4.97518 5.00866 5.07497 5.35315 5.37477 5.48688 5.59250 5.62903 5.74337 5.83788 5.89105 5.99343 6.01986 6.07283 6.08540 6.22962 6.25175 6.34351 6.39716 6.43380 6.62606 7.18864 7.32435 7.42117 7.83259 8.01739 8.12814 8.49209 9.11047 9.40586 9.65370 11.11718 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.007958 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.087837 B = 3517.664729 C = 4384.523578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.366 6.366 3 C 0.070 3.930 4 C 0.149 3.851 5 H 0.072 0.928 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.135 4.135 9 C 0.112 3.888 10 N -0.624 5.624 11 C 0.517 3.483 12 O -0.521 6.521 13 C 0.008 3.992 14 C -0.502 4.502 15 H 0.074 0.926 16 C 0.053 3.947 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.021 0.979 25 H 0.022 0.978 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 3.535 13.863 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.285 6.285 3 C -0.006 4.006 4 C 0.045 3.955 5 H 0.090 0.910 6 C -0.165 4.165 7 C -0.154 4.154 8 C -0.173 4.173 9 C -0.011 4.011 10 N -0.361 5.361 11 C 0.309 3.691 12 O -0.397 6.397 13 C -0.031 4.031 14 C -0.541 4.541 15 H 0.092 0.908 16 C -0.147 4.147 17 N -0.542 5.542 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.352 3.401 13.773 14.380 hybrid contribution -0.683 0.041 -0.618 0.922 sum 1.668 3.443 13.154 13.700 Atomic orbital electron populations 1.22444 0.82291 1.01454 0.98774 1.87851 1.18623 1.27001 1.94990 1.22656 0.91642 0.86905 0.99410 1.21251 0.93683 0.95593 0.84996 0.90995 1.21968 0.95778 1.01548 0.97242 1.21502 0.96192 1.00285 0.97457 1.21915 1.00868 0.99619 0.94919 1.21613 0.81588 0.98458 0.99491 1.48316 1.08639 1.64271 1.14853 1.21836 0.85692 0.75626 0.85919 1.90455 1.16989 1.50795 1.81426 1.19231 0.98661 0.97444 0.87762 1.21181 0.93993 1.43068 0.95830 0.90782 1.24999 0.95906 0.95584 0.98200 1.69957 1.20086 1.46015 1.18162 0.86461 0.82810 0.77603 0.80381 1.20731 1.21340 1.19767 0.93757 0.90943 0.96063 0.96020 0.89853 0.90477 0.91975 0.92263 0.92302 0.91406 0.91286 0.88717 0.92461 0.93882 0.93801 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.64 101.05 1.07 1.86 16 2 O -0.37 -7.09 7.62 -59.94 -0.46 -7.54 16 3 C 0.07 1.21 4.72 37.16 0.18 1.39 16 4 C 0.15 2.35 3.31 -67.37 -0.22 2.12 16 5 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 6 C -0.13 -1.72 5.26 -26.38 -0.14 -1.86 16 7 C -0.12 -1.36 5.88 -26.69 -0.16 -1.52 16 8 C -0.13 -1.74 6.08 -26.61 -0.16 -1.91 16 9 C 0.11 1.72 6.32 -3.72 -0.02 1.70 16 10 N -0.62 -11.49 2.96 -164.97 -0.49 -11.98 16 11 C 0.52 11.96 7.41 -10.98 -0.08 11.88 16 12 O -0.52 -12.95 9.23 -19.16 -0.18 -13.12 16 13 C 0.01 0.21 3.86 -29.03 -0.11 0.10 16 14 C -0.50 -14.67 8.92 -34.44 -0.31 -14.97 16 15 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.08 1.66 5.99 -52.07 -0.31 1.34 16 27 H 0.08 1.23 7.38 -51.93 -0.38 0.84 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.60 5.97 -51.93 -0.31 1.29 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.04 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.04 1.17 7.48 -51.93 -0.39 0.78 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 291.10 15.07 4.39 4.39 Total: -1.00 -31.88 291.10 -7.01 -38.89 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.94 Total: -2.27 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.05 Total: 0.25 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.25 Total: -37.92 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.63 Total: -20.67 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.88 -7.01 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.612 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds