Wall clock time and date at job start Sun Mar 29 2020 23:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47147 * 2 1 4 4 C 1.42897 * 114.00315 * 180.02562 * 3 2 1 5 5 C 1.53121 * 109.52023 * 269.68280 * 4 3 2 6 6 C 1.53043 * 109.27830 * 182.43956 * 5 4 3 7 7 N 1.46845 * 109.51987 * 59.17810 * 6 5 4 8 8 C 1.46904 * 110.99617 * 174.16408 * 7 6 5 9 9 H 1.08996 * 109.47432 * 174.36818 * 8 7 6 10 10 C 1.50696 * 109.47320 * 54.36395 * 8 7 6 11 11 H 1.08000 * 120.00234 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00148 * 180.02562 * 10 8 7 13 13 N 1.31517 * 119.99656 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00187 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47050 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47354 * 119.99554 * 14 12 10 17 17 H 1.48504 * 109.46884 * 239.99661 * 14 12 10 18 18 C 1.53005 * 109.46883 * 294.36315 * 8 7 6 19 19 C 1.52996 * 109.47202 * 295.82036 * 18 8 7 20 20 C 1.46846 * 111.19736 * 298.25243 * 7 6 5 21 21 C 1.53043 * 109.52068 * 61.75013 * 20 7 6 22 22 H 1.09001 * 109.47150 * 300.00066 * 1 2 3 23 23 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47377 * 60.00176 * 1 2 3 25 25 H 1.09005 * 109.47163 * 119.99332 * 2 1 3 26 26 H 1.09001 * 109.47150 * 239.99934 * 2 1 3 27 27 H 1.08996 * 109.52114 * 29.86581 * 4 3 2 28 28 H 1.09003 * 109.50029 * 302.37810 * 5 4 3 29 29 H 1.08996 * 109.50604 * 62.49593 * 5 4 3 30 30 H 1.08993 * 109.46180 * 299.16002 * 6 5 4 31 31 H 1.08999 * 109.46146 * 179.19573 * 6 5 4 32 32 H 0.97002 * 119.99799 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46462 * 55.82192 * 18 8 7 34 34 H 1.08994 * 109.47172 * 175.81654 * 18 8 7 35 35 H 1.08998 * 109.47077 * 299.99868 * 19 18 8 36 36 H 1.09000 * 109.47109 * 60.00092 * 19 18 8 37 37 H 1.09004 * 109.46861 * 179.97438 * 19 18 8 38 38 H 1.08991 * 109.46732 * 301.73430 * 20 7 6 39 39 H 1.09000 * 109.46315 * 181.75978 * 20 7 6 40 40 H 1.08999 * 109.50363 * 180.87412 * 21 20 7 41 41 H 1.09001 * 109.50013 * 60.75665 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9408 1.5084 1.4424 6 6 5.4604 1.6904 1.4354 7 7 5.8022 2.9348 0.7346 8 6 7.2416 3.2131 0.8280 9 1 7.4837 4.0837 0.2185 10 6 8.0172 2.0205 0.3310 11 1 7.4934 1.1436 -0.0197 12 6 9.3957 2.0488 0.3239 13 7 10.0336 3.1169 0.7504 14 14 10.3571 0.5707 -0.2930 15 1 9.4116 -0.4939 -0.7144 16 1 11.1967 0.9739 -1.4495 17 1 11.2273 0.0570 0.7953 18 6 7.6136 3.4919 2.2858 19 6 6.9060 4.7634 2.7585 20 6 5.3643 2.8927 -0.6664 21 6 3.8419 2.7465 -0.7221 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.8641 0.6009 -0.5125 28 1 3.4765 2.3449 1.9647 29 1 3.6883 0.5769 1.9490 30 1 5.9249 0.8468 0.9251 31 1 5.8250 1.7395 2.4614 32 1 11.0034 3.1369 0.7451 33 1 7.3038 2.6513 2.9068 34 1 8.6923 3.6251 2.3664 35 1 7.2157 5.6038 2.1374 36 1 5.8272 4.6302 2.6779 37 1 7.1706 4.9617 3.7971 38 1 5.8292 2.0434 -1.1669 39 1 5.6591 3.8150 -1.1669 40 1 3.5187 2.6997 -1.7621 41 1 3.3761 3.6025 -0.2338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040689419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:43 Heat of formation + Delta-G solvation = -61.465532 kcal Electronic energy + Delta-G solvation = -18533.730140 eV Core-core repulsion = 15833.957969 eV Total energy + Delta-G solvation = -2699.772171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00907 -37.17845 -34.14678 -31.91394 -31.14308 -30.26177 -29.59010 -26.31808 -23.63411 -22.92792 -22.51980 -21.88854 -19.61094 -18.92803 -16.64591 -16.37980 -15.43505 -15.31052 -14.57640 -14.19545 -13.77786 -13.50163 -13.29127 -12.98085 -12.70114 -12.34784 -12.15410 -11.88627 -11.66666 -11.49156 -11.26827 -11.13364 -10.89397 -10.71118 -10.61245 -10.45083 -10.35404 -10.20583 -9.75728 -9.63001 -9.45847 -9.09402 -9.01816 -8.36495 -7.10030 -5.99218 -4.12756 3.24214 3.33134 3.35721 3.83489 4.38428 4.98656 5.02313 5.14356 5.24790 5.31372 5.32341 5.37479 5.55789 5.57152 5.82986 5.87988 6.02048 6.06636 6.13316 6.15648 6.31028 6.40146 6.40578 6.49793 6.57159 6.64449 6.72557 6.78586 6.88996 7.14608 7.21235 7.37986 7.48292 7.61980 7.77292 7.99615 8.16589 8.33795 8.48933 8.97849 9.54872 10.99771 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026874 B = 0.006444 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.666375 B = 4344.363019 C = 4930.732230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.092 3.908 5 C -0.135 4.135 6 C 0.065 3.935 7 N -0.534 5.534 8 C 0.213 3.787 9 H 0.038 0.962 10 C -0.542 4.542 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.886 3.114 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.110 4.110 19 C -0.138 4.138 20 C 0.066 3.934 21 C -0.109 4.109 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.260 0.740 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.578 -3.773 -0.458 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.307 6.307 4 C 0.035 3.965 5 C -0.173 4.173 6 C -0.064 4.064 7 N -0.258 5.258 8 C 0.107 3.893 9 H 0.056 0.944 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.714 3.286 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.149 4.149 19 C -0.195 4.195 20 C -0.063 4.063 21 C -0.147 4.147 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.757 -3.147 -0.203 13.142 hybrid contribution 1.307 -1.810 -0.722 2.346 sum -11.451 -4.957 -0.925 12.512 Atomic orbital electron populations 1.21732 0.94202 1.01809 1.02930 1.22426 0.95146 0.84689 0.99772 1.87895 1.22013 1.25596 1.95157 1.22210 0.79672 0.98374 0.96285 1.22124 0.97598 1.01317 0.96310 1.21849 0.92008 0.92665 0.99879 1.62405 1.19798 1.32208 1.11406 1.19282 0.80624 0.95765 0.93644 0.94365 1.21779 0.91748 1.01915 1.42711 0.92578 1.24906 0.97776 0.95704 0.95006 1.69887 1.08108 1.27717 1.46594 0.86643 0.80145 0.83215 0.78609 1.20041 1.21014 1.20994 1.21595 1.02424 0.94145 0.96717 1.21707 1.00577 0.99285 0.97980 1.21808 0.92037 1.00945 0.91470 1.21684 0.96957 0.96837 0.99269 0.91969 0.91513 0.92044 0.93664 0.93820 0.92908 0.91014 0.92812 0.94531 0.90889 0.92959 0.94934 0.89023 0.94262 0.93281 0.95668 0.94717 0.91257 0.92141 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.68 6.47 37.16 0.24 0.92 16 3 O -0.39 -5.90 9.99 -35.23 -0.35 -6.25 16 4 C 0.09 1.47 2.68 -26.61 -0.07 1.40 16 5 C -0.14 -2.23 5.72 -26.65 -0.15 -2.39 16 6 C 0.06 1.26 4.78 -3.83 -0.02 1.24 16 7 N -0.53 -11.16 4.02 -228.08 -0.92 -12.08 16 8 C 0.21 5.18 1.71 -68.86 -0.12 5.06 16 9 H 0.04 1.03 7.99 -51.93 -0.41 0.62 16 10 C -0.54 -14.27 7.23 -34.44 -0.25 -14.52 16 11 H 0.06 1.49 5.84 -52.49 -0.31 1.19 16 12 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 13 N -0.88 -24.62 11.30 55.43 0.63 -24.00 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 C -0.11 -2.60 5.14 -26.73 -0.14 -2.74 16 19 C -0.14 -2.82 9.79 37.16 0.36 -2.46 16 20 C 0.07 1.27 5.19 -3.83 -0.02 1.25 16 21 C -0.11 -1.79 5.75 -26.65 -0.15 -1.95 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.53 7.96 -51.93 -0.41 0.11 16 26 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.05 0.84 7.79 -51.93 -0.40 0.44 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.80 7.96 -51.93 -0.41 0.39 16 30 H 0.04 0.77 6.38 -51.93 -0.33 0.44 16 31 H 0.07 1.47 6.13 -51.93 -0.32 1.15 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.03 0.75 6.25 -51.92 -0.32 0.43 16 34 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.97 7.73 -51.93 -0.40 0.57 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.03 0.71 7.28 -51.93 -0.38 0.34 16 39 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -27.25 313.03 -8.34 -35.59 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.37 Total: -0.38 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.03 Total: -13.50 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.29 Total: -36.07 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.35 Total: -6.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.25 -8.34 -35.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040689419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.877 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds