Wall clock time and date at job start Sun Mar 29 2020 23:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47147 * 2 1 4 4 C 1.42897 * 114.00315 * 180.02562 * 3 2 1 5 5 C 1.53121 * 109.52023 * 269.68280 * 4 3 2 6 6 C 1.53043 * 109.27830 * 182.43956 * 5 4 3 7 7 N 1.46845 * 109.51987 * 59.17810 * 6 5 4 8 8 C 1.46904 * 110.99617 * 174.16408 * 7 6 5 9 9 H 1.08996 * 109.47432 * 174.36818 * 8 7 6 10 10 C 1.50696 * 109.47320 * 54.36395 * 8 7 6 11 11 H 1.08000 * 120.00234 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00148 * 180.02562 * 10 8 7 13 13 N 1.31517 * 119.99656 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00187 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47050 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47354 * 119.99554 * 14 12 10 17 17 H 1.48504 * 109.46884 * 239.99661 * 14 12 10 18 18 C 1.53005 * 109.46883 * 294.36315 * 8 7 6 19 19 C 1.52996 * 109.47202 * 295.82036 * 18 8 7 20 20 C 1.46846 * 111.19736 * 298.25243 * 7 6 5 21 21 C 1.53043 * 109.52068 * 61.75013 * 20 7 6 22 22 H 1.09001 * 109.47150 * 300.00066 * 1 2 3 23 23 H 1.08999 * 109.46859 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47377 * 60.00176 * 1 2 3 25 25 H 1.09005 * 109.47163 * 119.99332 * 2 1 3 26 26 H 1.09001 * 109.47150 * 239.99934 * 2 1 3 27 27 H 1.08996 * 109.52114 * 29.86581 * 4 3 2 28 28 H 1.09003 * 109.50029 * 302.37810 * 5 4 3 29 29 H 1.08996 * 109.50604 * 62.49593 * 5 4 3 30 30 H 1.08993 * 109.46180 * 299.16002 * 6 5 4 31 31 H 1.08999 * 109.46146 * 179.19573 * 6 5 4 32 32 H 0.97002 * 119.99799 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46462 * 55.82192 * 18 8 7 34 34 H 1.08994 * 109.47172 * 175.81654 * 18 8 7 35 35 H 1.08998 * 109.47077 * 299.99868 * 19 18 8 36 36 H 1.09000 * 109.47109 * 60.00092 * 19 18 8 37 37 H 1.09004 * 109.46861 * 179.97438 * 19 18 8 38 38 H 1.08991 * 109.46732 * 301.73430 * 20 7 6 39 39 H 1.09000 * 109.46315 * 181.75978 * 20 7 6 40 40 H 1.08999 * 109.50363 * 180.87412 * 21 20 7 41 41 H 1.09001 * 109.50013 * 60.75665 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9408 1.5084 1.4424 6 6 5.4604 1.6904 1.4354 7 7 5.8022 2.9348 0.7346 8 6 7.2416 3.2131 0.8280 9 1 7.4837 4.0837 0.2185 10 6 8.0172 2.0205 0.3310 11 1 7.4934 1.1436 -0.0197 12 6 9.3957 2.0488 0.3239 13 7 10.0336 3.1169 0.7504 14 14 10.3571 0.5707 -0.2930 15 1 9.4116 -0.4939 -0.7144 16 1 11.1967 0.9739 -1.4495 17 1 11.2273 0.0570 0.7953 18 6 7.6136 3.4919 2.2858 19 6 6.9060 4.7634 2.7585 20 6 5.3643 2.8927 -0.6664 21 6 3.8419 2.7465 -0.7221 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.8641 0.6009 -0.5125 28 1 3.4765 2.3449 1.9647 29 1 3.6883 0.5769 1.9490 30 1 5.9249 0.8468 0.9251 31 1 5.8250 1.7395 2.4614 32 1 11.0034 3.1369 0.7451 33 1 7.3038 2.6513 2.9068 34 1 8.6923 3.6251 2.3664 35 1 7.2157 5.6038 2.1374 36 1 5.8272 4.6302 2.6779 37 1 7.1706 4.9617 3.7971 38 1 5.8292 2.0434 -1.1669 39 1 5.6591 3.8150 -1.1669 40 1 3.5187 2.6997 -1.7621 41 1 3.3761 3.6025 -0.2338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040689419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:43 Heat of formation + Delta-G solvation = -77.072072 kcal Electronic energy + Delta-G solvation = -18534.406890 eV Core-core repulsion = 15833.957969 eV Total energy + Delta-G solvation = -2700.448922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43743 -38.59363 -35.81103 -33.72833 -32.47144 -31.71768 -30.95501 -28.22060 -25.35536 -24.23133 -23.91902 -23.24138 -21.22632 -20.65828 -18.31688 -17.83737 -17.05812 -16.47629 -16.23455 -15.75626 -15.34617 -15.03922 -14.79394 -14.49914 -14.07505 -13.78293 -13.49495 -13.24634 -13.10162 -13.04894 -12.88012 -12.60482 -12.50180 -12.38650 -12.14019 -12.00935 -11.78980 -11.74919 -11.52947 -11.30441 -11.14856 -10.95707 -10.44947 -10.28886 -8.90761 -8.02319 -6.25051 1.35442 1.38824 1.47654 2.39848 2.72633 3.15731 3.41635 3.88413 3.92838 4.18772 4.20237 4.37095 4.41501 4.52066 4.55642 4.58032 4.61215 4.71033 4.76811 4.90243 4.92930 4.96286 5.01198 5.04310 5.09045 5.14260 5.25677 5.29299 5.32416 5.40480 5.44722 5.52868 5.65366 5.81039 6.08213 6.21175 6.35287 6.40643 6.69607 6.96500 7.45890 8.92607 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026874 B = 0.006444 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.666375 B = 4344.363019 C = 4930.732230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.397 6.397 4 C 0.097 3.903 5 C -0.125 4.125 6 C 0.069 3.931 7 N -0.532 5.532 8 C 0.219 3.781 9 H 0.005 0.995 10 C -0.550 4.550 11 H 0.050 0.950 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.945 3.055 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.280 1.280 18 C -0.105 4.105 19 C -0.126 4.126 20 C 0.067 3.933 21 C -0.100 4.100 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.261 0.739 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.018 0.982 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 -4.803 -0.412 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.317 6.317 4 C 0.039 3.961 5 C -0.163 4.163 6 C -0.059 4.059 7 N -0.256 5.256 8 C 0.111 3.889 9 H 0.023 0.977 10 C -0.589 4.589 11 H 0.068 0.932 12 C -0.177 4.177 13 N -0.550 5.550 14 Si 0.771 3.229 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.206 1.206 18 C -0.144 4.144 19 C -0.183 4.183 20 C -0.061 4.061 21 C -0.138 4.138 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.349 -4.185 -0.158 14.948 hybrid contribution 1.758 -1.503 -0.748 2.431 sum -12.591 -5.689 -0.906 13.846 Atomic orbital electron populations 1.21741 0.92391 1.03323 1.02791 1.22706 0.96649 0.83274 1.00377 1.87880 1.20949 1.27679 1.95180 1.22045 0.80540 0.97943 0.95572 1.22015 0.94844 1.02244 0.97170 1.21817 0.94248 0.91089 0.98784 1.62369 1.17455 1.33127 1.12631 1.19062 0.82587 0.93786 0.93426 0.97724 1.21995 0.92178 1.02237 1.42484 0.93233 1.25589 0.98746 0.98046 0.95354 1.70009 1.08265 1.29246 1.47443 0.85714 0.78769 0.80298 0.78073 1.19762 1.20763 1.20619 1.21441 1.00874 0.95731 0.96341 1.21566 1.00538 0.97281 0.98935 1.21819 0.94198 0.99914 0.90192 1.21564 0.94302 0.97298 1.00612 0.92170 0.89202 0.92117 0.93132 0.93161 0.92907 0.91098 0.90906 0.96386 0.91692 0.92955 0.94968 0.91949 0.94857 0.92489 0.93617 0.96415 0.91857 0.90350 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 10.28 71.98 0.74 -1.69 16 2 C 0.05 1.00 6.47 71.98 0.47 1.46 16 3 O -0.40 -11.13 9.99 -148.98 -1.49 -12.62 16 4 C 0.10 2.90 2.68 30.67 0.08 2.98 16 5 C -0.12 -3.89 5.72 30.65 0.18 -3.71 16 6 C 0.07 2.66 4.78 86.33 0.41 3.08 16 7 N -0.53 -22.29 4.02 -875.51 -3.52 -25.81 16 8 C 0.22 10.86 1.71 44.17 0.08 10.93 16 9 H 0.00 0.27 7.99 -2.39 -0.02 0.25 16 10 C -0.55 -29.45 7.23 25.60 0.19 -29.27 16 11 H 0.05 2.67 5.84 -2.91 -0.02 2.66 16 12 C 0.02 1.23 5.29 84.65 0.45 1.67 16 13 N -0.91 -51.64 11.30 21.45 0.24 -51.40 16 14 Si 0.94 43.28 29.54 68.60 2.03 45.30 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C -0.11 -5.02 5.14 30.59 0.16 -4.86 16 19 C -0.13 -5.07 9.79 71.98 0.70 -4.36 16 20 C 0.07 2.59 5.19 86.33 0.45 3.04 16 21 C -0.10 -3.12 5.75 30.65 0.18 -2.95 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 1.04 7.96 -2.38 -0.02 1.02 16 26 H 0.05 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.05 1.59 7.79 -2.39 -0.02 1.57 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.00 7.96 -2.39 -0.02 1.98 16 30 H 0.02 0.76 6.38 -2.39 -0.02 0.74 16 31 H 0.06 2.59 6.13 -2.39 -0.01 2.57 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.03 1.50 6.25 -2.38 -0.01 1.48 16 34 H 0.06 3.36 5.97 -2.39 -0.01 3.34 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 2.19 7.73 -2.39 -0.02 2.17 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.02 0.73 7.28 -2.39 -0.02 0.72 16 39 H 0.06 2.47 8.02 -2.39 -0.02 2.45 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -58.01 313.03 2.30 -55.71 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.97 Total: 12.50 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.07 Total: -23.67 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -3.28 Total: -77.21 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -1.49 Total: -12.62 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -58.01 2.30 -55.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040689419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.360 kcal (2) G-P(sol) polarization free energy of solvation -58.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds