Wall clock time and date at job start Sun Mar 29 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47110 * 2 1 4 4 C 1.42897 * 113.99862 * 180.02562 * 3 2 1 5 5 C 1.53126 * 109.52331 * 149.99973 * 4 3 2 6 6 C 1.53035 * 109.28064 * 177.55917 * 5 4 3 7 7 N 1.46848 * 109.52170 * 300.82012 * 6 5 4 8 8 C 1.46902 * 110.99950 * 185.83686 * 7 6 5 9 9 H 1.08996 * 109.47038 * 303.21790 * 8 7 6 10 10 C 1.50698 * 109.46955 * 63.21454 * 8 7 6 11 11 H 1.08009 * 120.00062 * 5.72393 * 10 8 7 12 12 C 1.37877 * 120.00199 * 185.72342 * 10 8 7 13 13 N 1.31508 * 120.00224 * 193.43766 * 12 10 8 14 14 Si 1.86800 * 119.99760 * 13.43640 * 12 10 8 15 15 H 1.48505 * 109.47037 * 84.73003 * 14 12 10 16 16 H 1.48502 * 109.47124 * 204.73242 * 14 12 10 17 17 H 1.48504 * 109.47045 * 324.73026 * 14 12 10 18 18 C 1.53001 * 109.46602 * 183.21228 * 8 7 6 19 19 C 1.52997 * 109.47392 * 301.91799 * 18 8 7 20 20 C 1.46855 * 111.19876 * 61.74280 * 7 6 5 21 21 C 1.53043 * 109.51845 * 298.25780 * 20 7 6 22 22 H 1.09002 * 109.47606 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47276 * 299.99846 * 1 2 3 24 24 H 1.09003 * 109.47556 * 60.00142 * 1 2 3 25 25 H 1.08997 * 109.46741 * 240.00212 * 2 1 3 26 26 H 1.08996 * 109.47181 * 119.99934 * 2 1 3 27 27 H 1.09001 * 109.57781 * 29.84152 * 4 3 2 28 28 H 1.09001 * 109.50372 * 57.61172 * 5 4 3 29 29 H 1.09001 * 109.50094 * 297.49835 * 5 4 3 30 30 H 1.08994 * 109.46484 * 180.80168 * 6 5 4 31 31 H 1.09003 * 109.46199 * 60.83456 * 6 5 4 32 32 H 0.96999 * 120.00181 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46769 * 181.92011 * 18 8 7 34 34 H 1.08997 * 109.47488 * 61.92786 * 18 8 7 35 35 H 1.08997 * 109.47156 * 54.98577 * 19 18 8 36 36 H 1.09002 * 109.46965 * 174.98435 * 19 18 8 37 37 H 1.09001 * 109.47558 * 294.98434 * 19 18 8 38 38 H 1.08997 * 109.46160 * 58.27175 * 20 7 6 39 39 H 1.08998 * 109.45989 * 178.24405 * 20 7 6 40 40 H 1.08997 * 109.50327 * 299.23337 * 21 20 7 41 41 H 1.09007 * 109.49560 * 179.12335 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8420 2.7466 -0.7222 6 6 5.3643 2.8927 -0.6665 7 7 5.8023 2.9347 0.7345 8 6 7.2417 3.2130 0.8279 9 1 7.7943 2.4621 0.2632 10 6 7.5271 4.5793 0.2599 11 1 6.7116 5.2180 -0.0462 12 6 8.8291 5.0142 0.1308 13 7 9.0779 6.2829 -0.1096 14 14 10.2397 3.8010 0.2974 15 1 10.4768 3.1350 -1.0086 16 1 11.4679 4.5242 0.7145 17 1 9.8959 2.7794 1.3189 18 6 7.6753 3.1697 2.2946 19 6 6.8655 4.1907 3.0962 20 6 5.4604 1.6903 1.4353 21 6 3.9408 1.5083 1.4423 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8650 0.6010 -0.5119 28 1 3.3761 3.6025 -0.2339 29 1 3.5187 2.6997 -1.7621 30 1 5.6592 3.8149 -1.1670 31 1 5.8293 2.0433 -1.1671 32 1 9.9939 6.5889 -0.2001 33 1 8.7361 3.4097 2.3671 34 1 7.5005 2.1714 2.6959 35 1 5.8013 4.0045 2.9517 36 1 7.1101 4.0983 4.1544 37 1 7.1081 5.1966 2.7537 38 1 5.9249 0.8466 0.9249 39 1 5.8250 1.7394 2.4613 40 1 3.4766 2.3447 1.9647 41 1 3.6883 0.5768 1.9489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040689420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:45 Heat of formation + Delta-G solvation = -50.549000 kcal Electronic energy + Delta-G solvation = -18535.746901 eV Core-core repulsion = 15836.448107 eV Total energy + Delta-G solvation = -2699.298795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.16946 -37.36981 -34.35224 -32.04328 -31.32980 -30.49564 -29.56677 -26.73282 -23.74398 -22.92247 -22.79613 -21.90961 -19.84696 -18.93711 -16.79052 -16.42738 -15.64917 -15.53459 -14.64393 -14.26142 -13.85128 -13.70427 -13.49897 -13.18668 -12.82113 -12.53887 -12.30888 -12.12989 -11.90165 -11.69932 -11.46227 -11.14221 -10.97567 -10.76061 -10.67431 -10.50215 -10.36782 -10.06266 -9.96441 -9.92820 -9.33317 -9.23130 -8.89586 -8.43167 -7.30164 -6.06783 -4.00377 3.27343 3.36174 3.38459 3.74768 4.42690 4.73234 4.94027 5.02388 5.15380 5.22960 5.24868 5.28186 5.41240 5.48407 5.65515 5.78607 5.82904 5.95149 5.97697 5.99848 6.07980 6.17289 6.20368 6.29302 6.37320 6.43742 6.49698 6.66703 6.74135 6.80674 6.96866 7.11991 7.21071 7.39637 7.51149 7.72293 7.98755 8.11321 8.68649 9.04486 9.58653 11.06096 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041133 B = 0.005782 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.550330 B = 4841.697302 C = 5029.621723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.384 6.384 4 C 0.091 3.909 5 C -0.111 4.111 6 C 0.067 3.933 7 N -0.518 5.518 8 C 0.190 3.810 9 H -0.010 1.010 10 C -0.500 4.500 11 H 0.081 0.919 12 C 0.076 3.924 13 N -0.893 5.893 14 Si 0.857 3.143 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.253 1.253 18 C -0.122 4.122 19 C -0.126 4.126 20 C 0.050 3.950 21 C -0.133 4.133 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.018 0.982 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -12.141 1.494 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.304 6.304 4 C 0.034 3.966 5 C -0.149 4.149 6 C -0.061 4.061 7 N -0.243 5.243 8 C 0.083 3.917 9 H 0.008 0.992 10 C -0.538 4.538 11 H 0.099 0.901 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.684 3.316 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.178 1.178 18 C -0.160 4.160 19 C -0.183 4.183 20 C -0.079 4.079 21 C -0.171 4.171 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.204 -11.450 1.696 16.110 hybrid contribution 1.576 -1.576 -0.346 2.255 sum -9.628 -13.026 1.350 16.255 Atomic orbital electron populations 1.21735 0.94101 1.01844 1.03062 1.22431 0.95288 0.84648 0.99659 1.87927 1.21752 1.25581 1.95107 1.22234 0.79953 0.98454 0.95994 1.21696 0.96741 0.96847 0.99567 1.21941 0.92235 1.01723 0.90230 1.61877 1.18860 1.30961 1.12628 1.19604 0.82808 0.96754 0.92547 0.99227 1.20830 0.93299 0.98531 1.41172 0.90084 1.24842 0.98345 0.94544 0.94917 1.69939 1.20128 1.13691 1.49378 0.87377 0.82562 0.82717 0.78902 1.20718 1.21499 1.17812 1.22035 0.99936 0.96590 0.97441 1.21494 1.00200 1.00972 0.95678 1.22111 0.93971 0.91571 1.00212 1.22055 0.96506 1.01721 0.96793 0.91492 0.91906 0.91950 0.93828 0.93736 0.93073 0.90368 0.91818 0.88549 0.96397 0.92744 0.92360 0.95362 0.92600 0.96133 0.91493 0.96408 0.90217 0.90368 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.63 6.47 37.16 0.24 0.87 16 3 O -0.38 -5.57 9.99 -35.23 -0.35 -5.92 16 4 C 0.09 1.35 2.68 -26.61 -0.07 1.28 16 5 C -0.11 -1.79 5.75 -26.65 -0.15 -1.94 16 6 C 0.07 1.27 5.29 -3.83 -0.02 1.25 16 7 N -0.52 -10.49 3.65 -228.07 -0.83 -11.32 16 8 C 0.19 4.39 1.34 -68.86 -0.09 4.30 16 9 H -0.01 -0.23 6.87 -51.93 -0.36 -0.59 16 10 C -0.50 -13.47 7.09 -34.44 -0.24 -13.71 16 11 H 0.08 2.40 7.42 -52.48 -0.39 2.01 16 12 C 0.08 2.11 5.37 -17.82 -0.10 2.01 16 13 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 14 Si 0.86 20.86 25.90 -169.99 -4.40 16.46 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.25 -5.82 5.30 56.52 0.30 -5.52 16 18 C -0.12 -2.64 4.53 -26.73 -0.12 -2.76 16 19 C -0.13 -2.61 9.30 37.16 0.35 -2.27 16 20 C 0.05 0.86 4.77 -3.83 -0.02 0.84 16 21 C -0.13 -1.99 5.72 -26.65 -0.15 -2.14 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.04 0.46 7.96 -51.93 -0.41 0.05 16 27 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 2.03 6.63 -51.93 -0.34 1.69 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.06 1.33 4.67 -51.93 -0.24 1.09 16 34 H 0.03 0.55 6.31 -51.93 -0.33 0.22 16 35 H 0.05 1.13 6.99 -51.93 -0.36 0.76 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.56 7.46 -51.93 -0.39 1.18 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 1.36 5.58 -51.93 -0.29 1.07 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -28.76 306.90 -7.58 -36.34 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.39 Total: -1.05 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 0.00 Total: -13.26 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.06 Total: -37.20 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.35 Total: -5.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.40 Total: 16.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.76 -7.58 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040689420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.208 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds