Wall clock time and date at job start Sun Mar 29 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47110 * 2 1 4 4 C 1.42897 * 113.99862 * 180.02562 * 3 2 1 5 5 C 1.53126 * 109.52331 * 149.99973 * 4 3 2 6 6 C 1.53035 * 109.28064 * 177.55917 * 5 4 3 7 7 N 1.46848 * 109.52170 * 300.82012 * 6 5 4 8 8 C 1.46902 * 110.99950 * 185.83686 * 7 6 5 9 9 H 1.08996 * 109.47038 * 303.21790 * 8 7 6 10 10 C 1.50698 * 109.46955 * 63.21454 * 8 7 6 11 11 H 1.08009 * 120.00062 * 5.72393 * 10 8 7 12 12 C 1.37877 * 120.00199 * 185.72342 * 10 8 7 13 13 N 1.31508 * 120.00224 * 193.43766 * 12 10 8 14 14 Si 1.86800 * 119.99760 * 13.43640 * 12 10 8 15 15 H 1.48505 * 109.47037 * 84.73003 * 14 12 10 16 16 H 1.48502 * 109.47124 * 204.73242 * 14 12 10 17 17 H 1.48504 * 109.47045 * 324.73026 * 14 12 10 18 18 C 1.53001 * 109.46602 * 183.21228 * 8 7 6 19 19 C 1.52997 * 109.47392 * 301.91799 * 18 8 7 20 20 C 1.46855 * 111.19876 * 61.74280 * 7 6 5 21 21 C 1.53043 * 109.51845 * 298.25780 * 20 7 6 22 22 H 1.09002 * 109.47606 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47276 * 299.99846 * 1 2 3 24 24 H 1.09003 * 109.47556 * 60.00142 * 1 2 3 25 25 H 1.08997 * 109.46741 * 240.00212 * 2 1 3 26 26 H 1.08996 * 109.47181 * 119.99934 * 2 1 3 27 27 H 1.09001 * 109.57781 * 29.84152 * 4 3 2 28 28 H 1.09001 * 109.50372 * 57.61172 * 5 4 3 29 29 H 1.09001 * 109.50094 * 297.49835 * 5 4 3 30 30 H 1.08994 * 109.46484 * 180.80168 * 6 5 4 31 31 H 1.09003 * 109.46199 * 60.83456 * 6 5 4 32 32 H 0.96999 * 120.00181 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46769 * 181.92011 * 18 8 7 34 34 H 1.08997 * 109.47488 * 61.92786 * 18 8 7 35 35 H 1.08997 * 109.47156 * 54.98577 * 19 18 8 36 36 H 1.09002 * 109.46965 * 174.98435 * 19 18 8 37 37 H 1.09001 * 109.47558 * 294.98434 * 19 18 8 38 38 H 1.08997 * 109.46160 * 58.27175 * 20 7 6 39 39 H 1.08998 * 109.45989 * 178.24405 * 20 7 6 40 40 H 1.08997 * 109.50327 * 299.23337 * 21 20 7 41 41 H 1.09007 * 109.49560 * 179.12335 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8420 2.7466 -0.7222 6 6 5.3643 2.8927 -0.6665 7 7 5.8023 2.9347 0.7345 8 6 7.2417 3.2130 0.8279 9 1 7.7943 2.4621 0.2632 10 6 7.5271 4.5793 0.2599 11 1 6.7116 5.2180 -0.0462 12 6 8.8291 5.0142 0.1308 13 7 9.0779 6.2829 -0.1096 14 14 10.2397 3.8010 0.2974 15 1 10.4768 3.1350 -1.0086 16 1 11.4679 4.5242 0.7145 17 1 9.8959 2.7794 1.3189 18 6 7.6753 3.1697 2.2946 19 6 6.8655 4.1907 3.0962 20 6 5.4604 1.6903 1.4353 21 6 3.9408 1.5083 1.4423 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8650 0.6010 -0.5119 28 1 3.3761 3.6025 -0.2339 29 1 3.5187 2.6997 -1.7621 30 1 5.6592 3.8149 -1.1670 31 1 5.8293 2.0433 -1.1671 32 1 9.9939 6.5889 -0.2001 33 1 8.7361 3.4097 2.3671 34 1 7.5005 2.1714 2.6959 35 1 5.8013 4.0045 2.9517 36 1 7.1101 4.0983 4.1544 37 1 7.1081 5.1966 2.7537 38 1 5.9249 0.8466 0.9249 39 1 5.8250 1.7394 2.4613 40 1 3.4766 2.3447 1.9647 41 1 3.6883 0.5768 1.9489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040689420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:45 Heat of formation + Delta-G solvation = -68.942681 kcal Electronic energy + Delta-G solvation = -18536.544511 eV Core-core repulsion = 15836.448107 eV Total energy + Delta-G solvation = -2700.096405 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51010 -38.68312 -35.92261 -33.97468 -32.53936 -31.83489 -30.86655 -28.59766 -25.39575 -24.31285 -23.93690 -23.22472 -21.39582 -20.49601 -18.49838 -17.90880 -17.18272 -16.55561 -16.16071 -15.80708 -15.36194 -15.14350 -15.03156 -14.62087 -14.37855 -13.97686 -13.70516 -13.37286 -13.13437 -12.90460 -12.85532 -12.72808 -12.42918 -12.36059 -12.15037 -11.99709 -11.83734 -11.74365 -11.53877 -11.33329 -11.10373 -10.89508 -10.52528 -10.28693 -8.91404 -8.23459 -6.20472 1.34089 1.37585 1.45253 2.37822 2.72994 3.09970 3.23794 3.85947 3.89277 4.16275 4.19995 4.29415 4.38133 4.40242 4.44339 4.52209 4.54173 4.55125 4.62918 4.70572 4.77807 4.93705 4.99124 5.00461 5.07424 5.07913 5.16780 5.22040 5.23966 5.28524 5.34735 5.43210 5.44311 5.74224 5.83241 6.11764 6.37361 6.45705 6.77780 6.84174 7.42134 8.93259 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041133 B = 0.005782 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.550330 B = 4841.697302 C = 5029.621723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.097 3.903 5 C -0.103 4.103 6 C 0.070 3.930 7 N -0.532 5.532 8 C 0.193 3.807 9 H -0.014 1.014 10 C -0.492 4.492 11 H 0.036 0.964 12 C 0.020 3.980 13 N -0.944 5.944 14 Si 0.917 3.083 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.225 1.225 18 C -0.122 4.122 19 C -0.117 4.117 20 C 0.050 3.950 21 C -0.125 4.125 22 H 0.091 0.909 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 -15.420 2.600 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.039 3.961 5 C -0.141 4.141 6 C -0.058 4.058 7 N -0.257 5.257 8 C 0.085 3.915 9 H 0.003 0.997 10 C -0.530 4.530 11 H 0.054 0.946 12 C -0.178 4.178 13 N -0.585 5.585 14 Si 0.742 3.258 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.148 1.148 18 C -0.160 4.160 19 C -0.174 4.174 20 C -0.078 4.078 21 C -0.163 4.163 22 H 0.109 0.891 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.849 -14.759 2.811 19.134 hybrid contribution 1.630 -0.526 -0.723 1.859 sum -10.219 -15.285 2.088 18.505 Atomic orbital electron populations 1.21756 0.92815 1.03314 1.02617 1.22708 0.96400 0.83133 1.00647 1.87910 1.21110 1.27917 1.95194 1.22075 0.80656 0.97620 0.95719 1.21570 0.94393 0.97536 1.00627 1.21838 0.94277 1.00147 0.89567 1.61791 1.16893 1.33520 1.13521 1.19457 0.84803 0.93945 0.93326 0.99700 1.20979 0.92013 0.99801 1.40221 0.94598 1.25622 1.01170 0.96028 0.94968 1.70089 1.20647 1.15954 1.51782 0.86397 0.78895 0.80948 0.79591 1.20530 1.21674 1.14826 1.21991 0.99179 0.98560 0.96274 1.21372 1.00236 0.98489 0.97294 1.22192 0.95596 0.90065 0.99938 1.21986 0.94657 1.02575 0.97061 0.89069 0.92355 0.92419 0.92873 0.92635 0.91749 0.92039 0.90539 0.92083 0.95749 0.92846 0.93505 0.92039 0.92337 0.93107 0.95346 0.95439 0.89666 0.91685 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.91 6.47 71.98 0.47 1.37 16 3 O -0.40 -10.68 9.99 -148.98 -1.49 -12.17 16 4 C 0.10 2.64 2.68 30.67 0.08 2.72 16 5 C -0.10 -3.28 5.75 30.65 0.18 -3.10 16 6 C 0.07 2.66 5.29 86.32 0.46 3.12 16 7 N -0.53 -21.17 3.65 -875.49 -3.19 -24.36 16 8 C 0.19 8.77 1.34 44.17 0.06 8.83 16 9 H -0.01 -0.67 6.87 -2.39 -0.02 -0.68 16 10 C -0.49 -27.38 7.09 25.60 0.18 -27.20 16 11 H 0.04 2.27 7.42 -2.91 -0.02 2.25 16 12 C 0.02 1.12 5.37 84.66 0.45 1.57 16 13 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 14 Si 0.92 43.05 25.90 68.60 1.78 44.83 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 17 H -0.23 -9.49 5.30 99.48 0.53 -8.96 16 18 C -0.12 -5.02 4.53 30.59 0.14 -4.88 16 19 C -0.12 -4.68 9.30 71.98 0.67 -4.01 16 20 C 0.05 1.57 4.77 86.33 0.41 1.98 16 21 C -0.12 -3.37 5.72 30.65 0.18 -3.20 16 22 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.06 0.95 7.96 -2.39 -0.02 0.93 16 27 H 0.06 1.60 7.79 -2.39 -0.02 1.58 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 2.72 6.63 -2.39 -0.02 2.70 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.05 2.03 4.67 -2.39 -0.01 2.01 16 34 H 0.06 2.14 6.31 -2.39 -0.02 2.12 16 35 H 0.06 2.29 6.99 -2.39 -0.02 2.27 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 1.33 7.46 -2.39 -0.02 1.31 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 2.58 5.58 -2.39 -0.01 2.57 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 1.83 7.96 -2.38 -0.02 1.81 16 Total: -1.00 -63.93 306.90 2.20 -61.73 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.79 Total: 12.65 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.01 Total: -24.35 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.89 Total: -82.68 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.49 Total: -12.17 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.78 Total: 44.83 kcal Total: -63.93 2.20 -61.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040689420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.212 kcal (2) G-P(sol) polarization free energy of solvation -63.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds