Wall clock time and date at job start Sun Mar 29 2020 22:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.09003 * 109.51004 * 54.83846 * 3 2 1 5 5 C 1.53093 * 109.50752 * 294.74907 * 3 2 1 6 6 O 1.43012 * 109.26078 * 183.21784 * 5 3 2 7 7 C 1.43019 * 113.73637 * 58.67525 * 6 5 3 8 8 H 1.09001 * 109.50296 * 181.39441 * 7 6 5 9 9 C 1.52998 * 109.50685 * 61.26290 * 7 6 5 10 10 C 1.53104 * 109.25709 * 301.32620 * 7 6 5 11 11 N 1.47015 * 109.28937 * 56.82927 * 10 7 6 12 12 C 1.46907 * 110.99838 * 177.63190 * 11 10 7 13 13 C 1.52993 * 109.47270 * 67.15550 * 12 11 10 14 14 C 1.52999 * 109.47138 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47276 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00194 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00182 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99816 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46731 * 90.00059 * 19 17 15 21 21 H 1.48498 * 109.47012 * 209.99978 * 19 17 15 22 22 H 1.48496 * 109.47118 * 330.00474 * 19 17 15 23 23 H 1.09004 * 109.47376 * 186.01423 * 1 2 3 24 24 H 1.08996 * 109.47352 * 306.01620 * 1 2 3 25 25 H 1.09006 * 109.46952 * 66.01429 * 1 2 3 26 26 H 1.08996 * 109.47300 * 239.99244 * 2 1 3 27 27 H 1.09003 * 109.46790 * 119.99678 * 2 1 3 28 28 H 1.09009 * 109.50279 * 63.28278 * 5 3 2 29 29 H 1.08999 * 109.50806 * 303.15552 * 5 3 2 30 30 H 1.09000 * 109.47113 * 300.21373 * 9 7 6 31 31 H 1.08992 * 109.46974 * 60.21886 * 9 7 6 32 32 H 1.09002 * 109.47049 * 180.21922 * 9 7 6 33 33 H 1.09000 * 109.50410 * 176.78131 * 10 7 6 34 34 H 1.08998 * 109.50432 * 296.87736 * 10 7 6 35 35 H 1.09004 * 109.46856 * 187.16253 * 12 11 10 36 36 H 1.09005 * 109.46647 * 307.15537 * 12 11 10 37 37 H 1.08997 * 109.47368 * 300.00318 * 13 12 11 38 38 H 1.09005 * 109.47296 * 60.00384 * 13 12 11 39 39 H 1.08997 * 109.47213 * 300.00366 * 14 13 12 40 40 H 1.09005 * 109.46751 * 60.00003 * 14 13 12 41 41 H 0.97002 * 120.00215 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9829 0.8400 5 6 1.6408 2.1259 -1.3105 6 8 2.1838 3.4486 -1.3373 7 6 3.6088 3.4884 -1.2218 8 1 3.9454 4.5251 -1.2250 9 6 4.2378 2.7424 -2.4002 10 6 4.0280 2.8188 0.0897 11 7 3.5051 1.4452 0.1225 12 6 3.9334 0.7479 1.3426 13 6 3.2685 1.3941 2.5595 14 6 3.7151 0.6683 3.8301 15 6 3.0606 1.3051 5.0289 16 1 2.3925 2.1435 4.8976 17 6 3.3139 0.8169 6.2932 18 7 4.1269 -0.2043 6.4531 19 14 2.5020 1.6059 7.7791 20 1 1.2053 0.9345 8.0494 21 1 3.3891 1.4638 8.9615 22 1 2.2662 3.0467 7.5075 23 1 -0.3634 -1.0220 0.1077 24 1 -0.3634 0.6043 0.8312 25 1 -0.3633 0.4178 -0.9390 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.5540 2.1771 -1.3779 29 1 2.0318 1.5548 -2.1526 30 1 3.8990 1.7064 -2.3970 31 1 3.9390 3.2195 -3.3335 32 1 5.3237 2.7697 -2.3096 33 1 5.1158 2.7958 0.1551 34 1 3.6245 3.3821 0.9311 35 1 3.6418 -0.3007 1.2831 36 1 5.0168 0.8187 1.4401 37 1 3.5601 2.4427 2.6189 38 1 2.1851 1.3233 2.4620 39 1 3.4238 -0.3804 3.7710 40 1 4.7984 0.7395 3.9275 41 1 4.3054 -0.5476 7.3426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:11 Heat of formation + Delta-G solvation = -62.907967 kcal Electronic energy + Delta-G solvation = -18473.672419 eV Core-core repulsion = 15773.837699 eV Total energy + Delta-G solvation = -2699.834720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10107 -36.60138 -34.24634 -33.34496 -31.62996 -30.50813 -28.02667 -26.85938 -24.98454 -24.31102 -22.31727 -21.16308 -20.57559 -18.57408 -16.71784 -16.44591 -16.05791 -15.04606 -14.99694 -14.54629 -14.33641 -14.04461 -13.51484 -13.35136 -13.01445 -12.65271 -12.33157 -12.17841 -11.86990 -11.80505 -11.42259 -11.27389 -11.10482 -10.94225 -10.84448 -10.63632 -10.59739 -10.54888 -10.17974 -9.62973 -9.41001 -9.36748 -9.18258 -8.35674 -7.87430 -6.00603 -4.03125 3.30767 3.37015 3.40671 3.87365 4.09182 4.45258 4.87104 4.95308 5.05864 5.10038 5.21760 5.30831 5.34908 5.42903 5.51596 5.57888 5.63341 5.72533 5.77581 5.89134 5.89988 5.98853 5.99199 6.07256 6.17642 6.22916 6.29058 6.36916 6.39921 6.60895 6.79883 7.04795 7.21415 7.32684 7.37511 7.65531 7.80073 7.98784 8.42431 9.03705 9.61051 11.10434 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.005514 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.640819 B = 5076.744839 C = 5389.129361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.046 3.954 4 H 0.058 0.942 5 C 0.066 3.934 6 O -0.383 6.383 7 C 0.088 3.912 8 H 0.100 0.900 9 C -0.173 4.173 10 C 0.021 3.979 11 N -0.530 5.530 12 C 0.050 3.950 13 C -0.144 4.144 14 C 0.026 3.974 15 C -0.520 4.520 16 H 0.052 0.948 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 3.183 -16.652 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.063 4.063 4 H 0.076 0.924 5 C -0.010 4.010 6 O -0.302 6.302 7 C 0.030 3.970 8 H 0.118 0.882 9 C -0.231 4.231 10 C -0.108 4.108 11 N -0.254 5.254 12 C -0.077 4.077 13 C -0.183 4.183 14 C -0.012 4.012 15 C -0.558 4.558 16 H 0.070 0.930 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.546 2.986 -16.957 17.406 hybrid contribution -0.507 0.559 1.792 1.944 sum -3.053 3.545 -15.165 15.871 Atomic orbital electron populations 1.21796 0.95722 1.01872 1.01583 1.21554 0.95433 0.95449 1.03148 1.22338 0.88920 0.97054 0.98003 0.92403 1.22756 0.98360 0.83571 0.96362 1.88009 1.20540 1.27474 1.94155 1.22275 0.81027 0.99654 0.94012 0.88235 1.22262 1.01061 1.02144 0.97601 1.22761 1.00786 0.90008 0.97230 1.62539 1.09237 1.15013 1.38650 1.22377 0.99959 0.98342 0.87041 1.22209 0.99644 0.99761 0.96654 1.19006 0.96474 0.95378 0.90316 1.21249 1.27286 1.15714 0.91573 0.92952 1.25017 0.95267 0.95071 0.99038 1.69960 1.36089 1.24840 1.22595 0.86620 0.79311 0.79771 0.82478 1.20652 1.21175 1.19934 0.92524 0.92450 0.92982 0.91577 0.90576 0.88934 0.92441 0.90935 0.92834 0.91860 0.89930 0.93356 0.90623 0.91191 0.93534 0.93124 0.96656 0.96711 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.52 37.16 0.35 -1.37 16 2 C -0.12 -1.54 5.23 -26.73 -0.14 -1.68 16 3 C 0.05 0.65 1.49 -67.60 -0.10 0.55 16 4 H 0.06 0.96 6.39 -51.93 -0.33 0.63 16 5 C 0.07 0.84 5.57 37.21 0.21 1.05 16 6 O -0.38 -5.42 10.64 -35.23 -0.37 -5.79 16 7 C 0.09 1.10 3.92 -26.68 -0.10 0.99 16 8 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 9 C -0.17 -1.88 8.89 37.16 0.33 -1.55 16 10 C 0.02 0.29 4.76 -3.71 -0.02 0.27 16 11 N -0.53 -7.90 4.12 -226.33 -0.93 -8.83 16 12 C 0.05 0.86 4.83 -3.82 -0.02 0.84 16 13 C -0.14 -2.98 4.43 -26.73 -0.12 -3.09 16 14 C 0.03 0.67 4.97 -27.89 -0.14 0.53 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.50 6.95 -51.93 -0.36 0.14 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.14 6.18 -51.93 -0.32 0.81 16 28 H 0.09 1.04 6.88 -51.92 -0.36 0.68 16 29 H 0.06 0.68 6.49 -51.93 -0.34 0.35 16 30 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 34 H 0.05 0.77 6.62 -51.93 -0.34 0.43 16 35 H 0.08 1.30 6.36 -51.93 -0.33 0.96 16 36 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 37 H 0.05 0.98 6.64 -51.93 -0.34 0.64 16 38 H 0.05 1.06 6.39 -51.93 -0.33 0.73 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -30.21 309.51 -8.23 -38.44 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.14 Total: -1.87 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -0.16 Total: -17.14 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.20 Total: -35.19 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.37 Total: -5.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.21 -8.23 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.469 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds