Wall clock time and date at job start Sun Mar 29 2020 22:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.09003 * 109.51004 * 54.83846 * 3 2 1 5 5 C 1.53093 * 109.50752 * 294.74907 * 3 2 1 6 6 O 1.43012 * 109.26078 * 183.21784 * 5 3 2 7 7 C 1.43019 * 113.73637 * 58.67525 * 6 5 3 8 8 H 1.09001 * 109.50296 * 181.39441 * 7 6 5 9 9 C 1.52998 * 109.50685 * 61.26290 * 7 6 5 10 10 C 1.53104 * 109.25709 * 301.32620 * 7 6 5 11 11 N 1.47015 * 109.28937 * 56.82927 * 10 7 6 12 12 C 1.46907 * 110.99838 * 177.63190 * 11 10 7 13 13 C 1.52993 * 109.47270 * 67.15550 * 12 11 10 14 14 C 1.52999 * 109.47138 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47276 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00194 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00182 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99816 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46731 * 90.00059 * 19 17 15 21 21 H 1.48498 * 109.47012 * 209.99978 * 19 17 15 22 22 H 1.48496 * 109.47118 * 330.00474 * 19 17 15 23 23 H 1.09004 * 109.47376 * 186.01423 * 1 2 3 24 24 H 1.08996 * 109.47352 * 306.01620 * 1 2 3 25 25 H 1.09006 * 109.46952 * 66.01429 * 1 2 3 26 26 H 1.08996 * 109.47300 * 239.99244 * 2 1 3 27 27 H 1.09003 * 109.46790 * 119.99678 * 2 1 3 28 28 H 1.09009 * 109.50279 * 63.28278 * 5 3 2 29 29 H 1.08999 * 109.50806 * 303.15552 * 5 3 2 30 30 H 1.09000 * 109.47113 * 300.21373 * 9 7 6 31 31 H 1.08992 * 109.46974 * 60.21886 * 9 7 6 32 32 H 1.09002 * 109.47049 * 180.21922 * 9 7 6 33 33 H 1.09000 * 109.50410 * 176.78131 * 10 7 6 34 34 H 1.08998 * 109.50432 * 296.87736 * 10 7 6 35 35 H 1.09004 * 109.46856 * 187.16253 * 12 11 10 36 36 H 1.09005 * 109.46647 * 307.15537 * 12 11 10 37 37 H 1.08997 * 109.47368 * 300.00318 * 13 12 11 38 38 H 1.09005 * 109.47296 * 60.00384 * 13 12 11 39 39 H 1.08997 * 109.47213 * 300.00366 * 14 13 12 40 40 H 1.09005 * 109.46751 * 60.00003 * 14 13 12 41 41 H 0.97002 * 120.00215 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9829 0.8400 5 6 1.6408 2.1259 -1.3105 6 8 2.1838 3.4486 -1.3373 7 6 3.6088 3.4884 -1.2218 8 1 3.9454 4.5251 -1.2250 9 6 4.2378 2.7424 -2.4002 10 6 4.0280 2.8188 0.0897 11 7 3.5051 1.4452 0.1225 12 6 3.9334 0.7479 1.3426 13 6 3.2685 1.3941 2.5595 14 6 3.7151 0.6683 3.8301 15 6 3.0606 1.3051 5.0289 16 1 2.3925 2.1435 4.8976 17 6 3.3139 0.8169 6.2932 18 7 4.1269 -0.2043 6.4531 19 14 2.5020 1.6059 7.7791 20 1 1.2053 0.9345 8.0494 21 1 3.3891 1.4638 8.9615 22 1 2.2662 3.0467 7.5075 23 1 -0.3634 -1.0220 0.1077 24 1 -0.3634 0.6043 0.8312 25 1 -0.3633 0.4178 -0.9390 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.5540 2.1771 -1.3779 29 1 2.0318 1.5548 -2.1526 30 1 3.8990 1.7064 -2.3970 31 1 3.9390 3.2195 -3.3335 32 1 5.3237 2.7697 -2.3096 33 1 5.1158 2.7958 0.1551 34 1 3.6245 3.3821 0.9311 35 1 3.6418 -0.3007 1.2831 36 1 5.0168 0.8187 1.4401 37 1 3.5601 2.4427 2.6189 38 1 2.1851 1.3233 2.4620 39 1 3.4238 -0.3804 3.7710 40 1 4.7984 0.7395 3.9275 41 1 4.3054 -0.5476 7.3426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:10 Heat of formation + Delta-G solvation = -81.931693 kcal Electronic energy + Delta-G solvation = -18474.497349 eV Core-core repulsion = 15773.837699 eV Total energy + Delta-G solvation = -2700.659651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23615 -37.86362 -35.72114 -34.98975 -33.22935 -31.81781 -29.28562 -28.25289 -26.53368 -25.45472 -23.88913 -22.60328 -21.90051 -19.80053 -18.58186 -17.58295 -17.52329 -16.61423 -16.18917 -16.02787 -15.60674 -15.43200 -14.90594 -14.55641 -14.27201 -14.09619 -13.73072 -13.60530 -13.20761 -12.96553 -12.78211 -12.67815 -12.60459 -12.48714 -12.31341 -12.14245 -11.94716 -11.67584 -11.55933 -11.36329 -11.30925 -11.03169 -10.59203 -10.47240 -9.22705 -8.23514 -6.35616 1.35870 1.37052 1.48267 2.36980 2.80556 2.95921 3.08511 3.79665 3.87320 3.97190 4.06680 4.17139 4.25900 4.31339 4.35972 4.45520 4.54232 4.57244 4.64450 4.69210 4.73839 4.84376 4.90530 4.92049 5.02654 5.08288 5.13121 5.15644 5.26070 5.29636 5.38201 5.44816 5.47525 5.66159 5.79971 6.00266 6.07898 6.21668 6.25025 6.80159 7.33683 8.87390 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.005514 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.640819 B = 5076.744839 C = 5389.129361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.045 3.955 4 H 0.030 0.970 5 C 0.070 3.930 6 O -0.399 6.399 7 C 0.088 3.912 8 H 0.116 0.884 9 C -0.166 4.166 10 C 0.017 3.983 11 N -0.520 5.520 12 C 0.061 3.939 13 C -0.124 4.124 14 C 0.031 3.969 15 C -0.546 4.546 16 H 0.051 0.949 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.267 1.267 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.046 0.954 39 H -0.007 1.007 40 H -0.008 1.008 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 3.850 -17.804 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.064 4.064 4 H 0.048 0.952 5 C -0.007 4.007 6 O -0.318 6.318 7 C 0.030 3.970 8 H 0.133 0.867 9 C -0.223 4.223 10 C -0.111 4.111 11 N -0.244 5.244 12 C -0.066 4.066 13 C -0.163 4.163 14 C -0.006 4.006 15 C -0.584 4.584 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.210 3.659 -18.128 18.770 hybrid contribution -0.282 0.347 2.142 2.188 sum -3.492 4.006 -15.986 16.846 Atomic orbital electron populations 1.21779 0.94316 1.02372 1.02178 1.21521 0.96684 0.94429 1.02594 1.22405 0.88077 0.97738 0.98178 0.95229 1.22824 0.99360 0.83063 0.95434 1.87993 1.21449 1.28248 1.94102 1.22411 0.80497 1.00645 0.93445 0.86661 1.22191 1.01587 1.01291 0.97216 1.22868 1.01293 0.89222 0.97739 1.62592 1.09918 1.15458 1.36393 1.22178 0.99571 0.98375 0.86522 1.21960 0.99495 0.98891 0.95940 1.18890 0.94822 0.94583 0.92352 1.21646 1.27715 1.16040 0.92973 0.93061 1.25942 0.95731 0.95511 1.02337 1.70080 1.37224 1.26087 1.23631 0.85489 0.78489 0.79013 0.78333 1.19620 1.20348 1.19126 0.91675 0.93864 0.90784 0.90103 0.93042 0.87383 0.91024 0.91836 0.91615 0.90771 0.88980 0.95694 0.90533 0.91142 0.94186 0.93569 0.98815 0.98964 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.52 71.98 0.69 -2.49 16 2 C -0.11 -2.89 5.23 30.59 0.16 -2.73 16 3 C 0.04 1.24 1.49 44.92 0.07 1.31 16 4 H 0.03 1.00 6.39 -2.39 -0.02 0.98 16 5 C 0.07 1.62 5.57 72.01 0.40 2.03 16 6 O -0.40 -10.55 10.64 -148.98 -1.59 -12.13 16 7 C 0.09 2.02 3.92 30.63 0.12 2.14 16 8 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 9 C -0.17 -3.15 8.89 71.98 0.64 -2.51 16 10 C 0.02 0.47 4.76 86.32 0.41 0.88 16 11 N -0.52 -15.19 4.12 -869.96 -3.58 -18.77 16 12 C 0.06 2.14 4.83 86.30 0.42 2.55 16 13 C -0.12 -5.29 4.43 30.59 0.14 -5.16 16 14 C 0.03 1.68 4.97 29.85 0.15 1.83 16 15 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 19 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.25 6.95 -2.38 -0.02 1.23 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.55 6.18 -2.39 -0.01 1.53 16 28 H 0.11 2.16 6.88 -2.38 -0.02 2.15 16 29 H 0.07 1.49 6.49 -2.39 -0.02 1.48 16 30 H 0.06 1.33 6.12 -2.39 -0.01 1.32 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 34 H 0.02 0.80 6.62 -2.39 -0.02 0.79 16 35 H 0.08 2.66 6.36 -2.39 -0.02 2.65 16 36 H 0.07 2.44 8.09 -2.38 -0.02 2.42 16 37 H 0.04 1.74 6.64 -2.39 -0.02 1.72 16 38 H 0.05 2.00 6.39 -2.38 -0.02 1.98 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -65.10 309.51 2.00 -63.10 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.98 Total: 10.93 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 3.88 Total: -33.32 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -3.30 Total: -75.67 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.59 Total: -12.13 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.10 2.00 -63.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.832 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds