Wall clock time and date at job start Sun Mar 29 2020 22:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47167 * 2 1 4 4 H 1.09002 * 109.54164 * 303.86461 * 3 2 1 5 5 C 1.53096 * 109.50579 * 63.96688 * 3 2 1 6 6 O 1.43013 * 109.25744 * 176.78122 * 5 3 2 7 7 C 1.43007 * 113.74194 * 301.33384 * 6 5 3 8 8 H 1.08999 * 109.50847 * 298.73553 * 7 6 5 9 9 C 1.53001 * 109.54286 * 178.62312 * 7 6 5 10 10 C 1.53095 * 109.25966 * 58.67104 * 7 6 5 11 11 N 1.47012 * 109.50888 * 183.75387 * 3 2 1 12 12 C 1.46906 * 111.00092 * 57.67021 * 11 3 2 13 13 C 1.52990 * 109.47155 * 190.91463 * 12 11 3 14 14 C 1.53002 * 109.47163 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47061 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00003 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99598 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99701 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00446 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47384 * 89.99759 * 19 17 15 21 21 H 1.48501 * 109.47455 * 210.00071 * 19 17 15 22 22 H 1.48507 * 109.47203 * 330.00140 * 19 17 15 23 23 H 1.09001 * 109.47199 * 173.77405 * 1 2 3 24 24 H 1.09007 * 109.47224 * 293.77164 * 1 2 3 25 25 H 1.09001 * 109.47377 * 53.76899 * 1 2 3 26 26 H 1.08996 * 109.46902 * 240.00360 * 2 1 3 27 27 H 1.09000 * 109.47073 * 119.99924 * 2 1 3 28 28 H 1.09007 * 109.50431 * 56.85336 * 5 3 2 29 29 H 1.09001 * 109.54575 * 296.74356 * 5 3 2 30 30 H 1.09000 * 109.47595 * 300.19664 * 9 7 6 31 31 H 1.09003 * 109.47130 * 60.20215 * 9 7 6 32 32 H 1.09007 * 109.47344 * 180.19626 * 9 7 6 33 33 H 1.08999 * 109.51322 * 183.21856 * 10 7 6 34 34 H 1.08999 * 109.51005 * 63.08052 * 10 7 6 35 35 H 1.09003 * 109.46849 * 70.91280 * 12 11 3 36 36 H 1.09003 * 109.47142 * 310.91968 * 12 11 3 37 37 H 1.09003 * 109.47391 * 60.00149 * 13 12 11 38 38 H 1.09003 * 109.47508 * 300.00281 * 13 12 11 39 39 H 1.08994 * 109.47378 * 300.00327 * 14 13 12 40 40 H 1.09003 * 109.46723 * 60.00429 * 14 13 12 41 41 H 0.97002 * 119.99983 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6219 1.9771 -0.8530 5 6 1.6133 2.1356 1.2967 6 8 2.1558 3.4586 1.3250 7 6 3.5828 3.4976 1.2392 8 1 4.0132 2.9725 2.0919 9 6 4.0561 4.9526 1.2432 10 6 4.0294 2.8184 -0.0581 11 7 3.5073 1.4445 -0.0907 12 6 3.9612 0.7372 -1.2956 13 6 5.4740 0.5215 -1.2209 14 6 5.9467 -0.2157 -2.4755 15 6 7.4369 -0.4275 -2.4022 16 1 7.9914 -0.0723 -1.5462 17 6 8.0925 -1.0749 -3.4280 18 7 9.3929 -1.2602 -3.3637 19 14 7.1336 -1.6886 -4.9089 20 1 7.0860 -0.6244 -5.9436 21 1 7.8012 -2.8920 -5.4669 22 1 5.7511 -2.0374 -4.4937 23 1 -0.3633 -1.0216 -0.1114 24 1 -0.3634 0.4143 0.9405 25 1 -0.3634 0.6074 -0.8289 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9865 1.5709 2.1511 29 1 0.5254 2.1873 1.3416 30 1 3.6242 5.4776 0.3912 31 1 3.7379 5.4356 2.1671 32 1 5.1436 4.9811 1.1742 33 1 5.1183 2.7950 -0.1006 34 1 3.6431 3.3749 -0.9120 35 1 3.7220 1.3315 -2.1775 36 1 3.4593 -0.2282 -1.3610 37 1 5.7132 -0.0728 -0.3390 38 1 5.9759 1.4869 -1.1555 39 1 5.4448 -1.1810 -2.5405 40 1 5.7075 0.3783 -3.3577 41 1 9.8541 -1.7160 -4.0852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:12 Heat of formation + Delta-G solvation = -61.986387 kcal Electronic energy + Delta-G solvation = -18088.297867 eV Core-core repulsion = 15388.503110 eV Total energy + Delta-G solvation = -2699.794757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94769 -36.51204 -34.71743 -33.38180 -31.91840 -31.13964 -28.08259 -26.95001 -25.53149 -23.71850 -22.05417 -21.19777 -20.02380 -19.92089 -16.74424 -16.64961 -16.16869 -15.45676 -14.82816 -14.57798 -14.30906 -14.21713 -13.70514 -13.45943 -13.20268 -12.59429 -12.54058 -12.42560 -12.27332 -11.85494 -11.72712 -11.42782 -11.33497 -11.16809 -10.96059 -10.78899 -10.60445 -10.30996 -9.92883 -9.77083 -9.59361 -9.37600 -9.14987 -8.52768 -8.19274 -6.03184 -4.00838 3.30611 3.38025 3.41672 3.69935 3.88478 4.45906 4.69243 4.79138 4.87691 5.02948 5.13678 5.16487 5.27522 5.30824 5.34452 5.47170 5.53980 5.56550 5.63176 5.69240 5.73089 5.84565 5.88232 5.90898 5.97999 6.04365 6.09636 6.18260 6.27148 6.53224 6.58152 6.90542 7.10999 7.21129 7.24246 7.36077 7.46535 7.81340 8.56117 9.02346 9.59553 11.10432 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025790 B = 0.005462 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.452429 B = 5125.103174 C = 5969.188050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.048 3.952 4 H 0.045 0.955 5 C 0.071 3.929 6 O -0.387 6.387 7 C 0.088 3.912 8 H 0.066 0.934 9 C -0.144 4.144 10 C 0.023 3.977 11 N -0.533 5.533 12 C 0.048 3.952 13 C -0.096 4.096 14 C -0.013 4.013 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.008 0.992 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.034 7.382 8.300 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.061 4.061 4 H 0.063 0.937 5 C -0.006 4.006 6 O -0.306 6.306 7 C 0.030 3.970 8 H 0.084 0.916 9 C -0.202 4.202 10 C -0.105 4.105 11 N -0.258 5.258 12 C -0.078 4.078 13 C -0.134 4.134 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.544 5.544 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.026 0.974 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.807 7.224 8.625 20.225 hybrid contribution -0.469 -0.226 -1.699 1.777 sum -17.276 6.997 6.926 19.885 Atomic orbital electron populations 1.21806 0.95630 1.01849 1.01674 1.21622 0.95335 0.95409 1.03524 1.22325 0.88925 0.96826 0.98037 0.93716 1.22704 0.98338 0.83256 0.96283 1.87939 1.20765 1.27322 1.94583 1.22186 0.81073 0.96684 0.97008 0.91565 1.21747 1.01363 0.94271 1.02768 1.22854 1.01847 0.88720 0.97124 1.62276 1.07797 1.14994 1.40700 1.22440 0.98557 0.97981 0.88871 1.21460 0.91035 1.00560 1.00343 1.19550 0.97300 0.95161 0.93074 1.21141 0.90891 1.37139 1.06427 0.91034 1.25036 0.94731 0.95549 0.98228 1.69919 1.07973 1.43155 1.33335 0.86777 0.80701 0.78572 0.83209 1.20380 1.21385 1.19066 0.92415 0.92658 0.92793 0.90920 0.90869 0.92445 0.88770 0.92008 0.91806 0.90701 0.88820 0.94324 0.95384 0.90506 0.91974 0.92968 0.96672 0.97361 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.49 37.16 0.35 -1.00 16 2 C -0.12 -1.36 5.26 -26.73 -0.14 -1.51 16 3 C 0.05 0.61 2.07 -67.60 -0.14 0.47 16 4 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 5 C 0.07 0.83 5.94 37.21 0.22 1.05 16 6 O -0.39 -5.16 10.47 -35.23 -0.37 -5.53 16 7 C 0.09 1.11 3.42 -26.68 -0.09 1.02 16 8 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.14 -1.48 9.57 37.16 0.36 -1.13 16 10 C 0.02 0.32 4.73 -3.71 -0.02 0.30 16 11 N -0.53 -7.94 4.53 -226.34 -1.03 -8.97 16 12 C 0.05 0.81 4.76 -3.83 -0.02 0.79 16 13 C -0.10 -1.93 5.11 -26.74 -0.14 -2.07 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 19 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.43 6.94 -51.93 -0.36 0.07 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.09 0.91 6.85 -51.93 -0.36 0.56 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.09 1.37 6.42 -51.93 -0.33 1.04 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.08 1.24 5.64 -51.93 -0.29 0.95 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 1.05 6.55 -51.93 -0.34 0.71 16 39 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -30.96 313.78 -8.13 -39.10 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -7.42 Total: -3.22 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.16 Total: -15.97 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.25 Total: -36.40 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.37 Total: -5.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.96 -8.13 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.890 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds