Wall clock time and date at job start Sun Mar 29 2020 22:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47033 * 2 1 4 4 H 1.09001 * 109.50978 * 54.69697 * 3 2 1 5 5 C 1.53102 * 109.54051 * 294.58625 * 3 2 1 6 6 O 1.43012 * 109.25839 * 183.19703 * 5 3 2 7 7 C 1.43013 * 113.74022 * 58.67110 * 6 5 3 8 8 H 1.09008 * 109.53936 * 61.28612 * 7 6 5 9 9 C 1.52994 * 109.51012 * 181.39229 * 7 6 5 10 10 C 1.53097 * 109.26080 * 301.33171 * 7 6 5 11 11 N 1.47015 * 109.25970 * 56.84366 * 10 7 6 12 12 C 1.46894 * 111.00196 * 177.60961 * 11 10 7 13 13 C 1.53005 * 109.47336 * 307.84897 * 12 11 10 14 14 C 1.52994 * 109.47324 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47065 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00251 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99581 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99574 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00477 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46748 * 90.00378 * 19 17 15 21 21 H 1.48500 * 109.47138 * 210.00652 * 19 17 15 22 22 H 1.48498 * 109.46955 * 330.00163 * 19 17 15 23 23 H 1.08992 * 109.47330 * 305.78864 * 1 2 3 24 24 H 1.09001 * 109.46522 * 65.79160 * 1 2 3 25 25 H 1.09004 * 109.46730 * 185.78642 * 1 2 3 26 26 H 1.08997 * 109.47241 * 239.99462 * 2 1 3 27 27 H 1.09006 * 109.47108 * 119.99511 * 2 1 3 28 28 H 1.08997 * 109.50896 * 303.12934 * 5 3 2 29 29 H 1.08999 * 109.50553 * 63.26040 * 5 3 2 30 30 H 1.08995 * 109.47568 * 179.78017 * 9 7 6 31 31 H 1.08999 * 109.47506 * 299.78849 * 9 7 6 32 32 H 1.09000 * 109.46875 * 59.78458 * 9 7 6 33 33 H 1.09003 * 109.50344 * 296.90964 * 10 7 6 34 34 H 1.08999 * 109.50890 * 176.78248 * 10 7 6 35 35 H 1.09002 * 109.46933 * 67.85124 * 12 11 10 36 36 H 1.08995 * 109.47220 * 187.85357 * 12 11 10 37 37 H 1.08994 * 109.46877 * 300.00729 * 13 12 11 38 38 H 1.09003 * 109.46535 * 59.99706 * 13 12 11 39 39 H 1.08992 * 109.47314 * 300.00534 * 14 13 12 40 40 H 1.09006 * 109.46903 * 60.00149 * 14 13 12 41 41 H 0.97000 * 119.99867 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9836 0.8385 5 6 1.6447 2.1254 -1.3120 6 8 2.1877 3.4481 -1.3376 7 6 3.6123 3.4881 -1.2177 8 1 4.0637 2.9568 -2.0557 9 6 4.0847 4.9432 -1.2214 10 6 4.0276 2.8190 0.0951 11 7 3.5047 1.4453 0.1259 12 6 3.9295 0.7476 1.3468 13 6 5.4478 0.8617 1.4975 14 6 5.8901 0.1356 2.7695 15 6 7.3855 0.2486 2.9182 16 1 7.9627 0.7843 2.1792 17 6 8.0168 -0.3330 3.9972 18 7 9.3218 -0.2339 4.1272 19 14 7.0186 -1.2603 5.2751 20 1 6.9158 -2.6886 4.8818 21 1 7.6884 -1.1576 6.5964 22 1 5.6580 -0.6718 5.3628 23 1 -0.3633 0.6009 0.8335 24 1 -0.3632 0.4214 -0.9373 25 1 -0.3633 -1.0225 0.1036 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.0383 1.5541 -2.1527 29 1 0.5582 2.1765 -1.3828 30 1 5.1701 4.9732 -1.1261 31 1 3.7888 5.4191 -2.1563 32 1 3.6318 5.4743 -0.3842 33 1 3.6209 3.3822 0.9352 34 1 5.1152 2.7961 0.1639 35 1 3.4435 1.1997 2.2114 36 1 3.6491 -0.3036 1.2808 37 1 5.9337 0.4097 0.6329 38 1 5.7283 1.9130 1.5635 39 1 5.4042 0.5880 3.6338 40 1 5.6095 -0.9157 2.7038 41 1 9.7660 -0.6434 4.8861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:14 Heat of formation + Delta-G solvation = -61.999672 kcal Electronic energy + Delta-G solvation = -18110.991072 eV Core-core repulsion = 15411.195739 eV Total energy + Delta-G solvation = -2699.795333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95255 -36.51963 -34.78332 -33.34007 -31.90277 -31.12036 -28.08694 -26.91678 -25.61323 -23.69287 -22.03128 -21.24686 -20.09358 -19.81739 -16.75391 -16.60088 -16.16004 -15.40278 -14.90144 -14.52465 -14.37345 -14.25151 -13.64986 -13.45431 -13.21768 -12.61776 -12.51404 -12.39249 -12.23935 -11.89566 -11.73616 -11.42125 -11.34012 -11.17234 -10.96909 -10.76307 -10.61562 -10.34442 -9.89989 -9.69418 -9.66768 -9.41369 -9.15491 -8.53468 -8.18256 -6.04029 -4.01833 3.30385 3.37661 3.41270 3.71307 3.89692 4.45287 4.70520 4.79940 4.88680 5.04024 5.15176 5.17313 5.28844 5.30115 5.33806 5.48999 5.54366 5.57913 5.65792 5.70067 5.72573 5.84132 5.88931 5.89968 6.00439 6.04420 6.11793 6.16318 6.24336 6.51691 6.56699 6.87654 7.11971 7.21215 7.24574 7.31942 7.44697 7.80213 8.54807 9.01132 9.58664 11.09544 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025609 B = 0.005547 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.086955 B = 5046.113983 C = 5967.127515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.048 3.952 4 H 0.046 0.954 5 C 0.071 3.929 6 O -0.387 6.387 7 C 0.088 3.912 8 H 0.066 0.934 9 C -0.144 4.144 10 C 0.020 3.980 11 N -0.534 5.534 12 C 0.052 3.948 13 C -0.102 4.102 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.267 1.267 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 4.754 -10.203 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.061 4.061 4 H 0.064 0.936 5 C -0.006 4.006 6 O -0.306 6.306 7 C 0.030 3.970 8 H 0.084 0.916 9 C -0.202 4.202 10 C -0.108 4.108 11 N -0.258 5.258 12 C -0.075 4.075 13 C -0.140 4.140 14 C -0.050 4.050 15 C -0.557 4.557 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.544 5.544 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.517 4.622 -10.504 20.112 hybrid contribution -0.531 -0.410 1.589 1.725 sum -17.049 4.212 -8.914 19.694 Atomic orbital electron populations 1.21805 0.95643 1.01823 1.01697 1.21581 0.95342 0.95427 1.03403 1.22351 0.88914 0.96828 0.98040 0.93649 1.22695 0.98411 0.83351 0.96109 1.87942 1.21080 1.27317 1.94271 1.22203 0.81145 0.96758 0.96856 0.91625 1.21745 1.01415 0.94256 1.02752 1.22902 1.02174 0.88727 0.97004 1.62303 1.08634 1.15466 1.39427 1.22377 0.98030 0.98528 0.88583 1.21571 0.91397 1.00839 1.00188 1.19543 0.97372 0.95140 0.92988 1.21134 0.90476 1.34713 1.09339 0.91045 1.25036 0.94757 0.95933 0.97803 1.69919 1.08346 1.45428 1.30660 0.86774 0.80811 0.80577 0.81090 1.20270 1.21406 1.19122 0.92771 0.92667 0.92443 0.90981 0.91046 0.92487 0.88802 0.90666 0.91835 0.91975 0.94248 0.88439 0.95412 0.90634 0.91931 0.92699 0.96883 0.97051 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.53 37.16 0.35 -0.99 16 2 C -0.12 -1.33 5.25 -26.73 -0.14 -1.47 16 3 C 0.05 0.61 2.05 -67.60 -0.14 0.47 16 4 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.07 0.83 5.98 37.21 0.22 1.06 16 6 O -0.39 -5.22 10.47 -35.23 -0.37 -5.59 16 7 C 0.09 1.12 3.43 -26.68 -0.09 1.03 16 8 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 9 C -0.14 -1.53 9.57 37.15 0.36 -1.17 16 10 C 0.02 0.29 4.42 -3.71 -0.02 0.27 16 11 N -0.53 -7.97 4.65 -226.34 -1.05 -9.02 16 12 C 0.05 0.87 4.55 -3.82 -0.02 0.85 16 13 C -0.10 -2.04 4.66 -26.73 -0.12 -2.17 16 14 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 15 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 19 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.43 6.95 -51.93 -0.36 0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.86 6.18 -51.93 -0.32 0.54 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.91 6.88 -51.93 -0.36 0.56 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.46 6.06 -51.93 -0.31 1.15 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.23 6.40 -51.93 -0.33 0.90 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.05 1.09 6.27 -51.93 -0.33 0.77 16 39 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -30.87 313.40 -8.17 -39.04 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.44 Total: -3.08 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.14 Total: -15.98 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.28 Total: -36.39 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.37 Total: -5.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.87 -8.17 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.956 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds