Wall clock time and date at job start Sun Mar 29 2020 22:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47033 * 2 1 4 4 H 1.09001 * 109.50978 * 54.69697 * 3 2 1 5 5 C 1.53102 * 109.54051 * 294.58625 * 3 2 1 6 6 O 1.43012 * 109.25839 * 183.19703 * 5 3 2 7 7 C 1.43013 * 113.74022 * 58.67110 * 6 5 3 8 8 H 1.09008 * 109.53936 * 61.28612 * 7 6 5 9 9 C 1.52994 * 109.51012 * 181.39229 * 7 6 5 10 10 C 1.53097 * 109.26080 * 301.33171 * 7 6 5 11 11 N 1.47015 * 109.25970 * 56.84366 * 10 7 6 12 12 C 1.46894 * 111.00196 * 177.60961 * 11 10 7 13 13 C 1.53005 * 109.47336 * 307.84897 * 12 11 10 14 14 C 1.52994 * 109.47324 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47065 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00251 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99581 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99574 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00477 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46748 * 90.00378 * 19 17 15 21 21 H 1.48500 * 109.47138 * 210.00652 * 19 17 15 22 22 H 1.48498 * 109.46955 * 330.00163 * 19 17 15 23 23 H 1.08992 * 109.47330 * 305.78864 * 1 2 3 24 24 H 1.09001 * 109.46522 * 65.79160 * 1 2 3 25 25 H 1.09004 * 109.46730 * 185.78642 * 1 2 3 26 26 H 1.08997 * 109.47241 * 239.99462 * 2 1 3 27 27 H 1.09006 * 109.47108 * 119.99511 * 2 1 3 28 28 H 1.08997 * 109.50896 * 303.12934 * 5 3 2 29 29 H 1.08999 * 109.50553 * 63.26040 * 5 3 2 30 30 H 1.08995 * 109.47568 * 179.78017 * 9 7 6 31 31 H 1.08999 * 109.47506 * 299.78849 * 9 7 6 32 32 H 1.09000 * 109.46875 * 59.78458 * 9 7 6 33 33 H 1.09003 * 109.50344 * 296.90964 * 10 7 6 34 34 H 1.08999 * 109.50890 * 176.78248 * 10 7 6 35 35 H 1.09002 * 109.46933 * 67.85124 * 12 11 10 36 36 H 1.08995 * 109.47220 * 187.85357 * 12 11 10 37 37 H 1.08994 * 109.46877 * 300.00729 * 13 12 11 38 38 H 1.09003 * 109.46535 * 59.99706 * 13 12 11 39 39 H 1.08992 * 109.47314 * 300.00534 * 14 13 12 40 40 H 1.09006 * 109.46903 * 60.00149 * 14 13 12 41 41 H 0.97000 * 119.99867 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6015 1.9836 0.8385 5 6 1.6447 2.1254 -1.3120 6 8 2.1877 3.4481 -1.3376 7 6 3.6123 3.4881 -1.2177 8 1 4.0637 2.9568 -2.0557 9 6 4.0847 4.9432 -1.2214 10 6 4.0276 2.8190 0.0951 11 7 3.5047 1.4453 0.1259 12 6 3.9295 0.7476 1.3468 13 6 5.4478 0.8617 1.4975 14 6 5.8901 0.1356 2.7695 15 6 7.3855 0.2486 2.9182 16 1 7.9627 0.7843 2.1792 17 6 8.0168 -0.3330 3.9972 18 7 9.3218 -0.2339 4.1272 19 14 7.0186 -1.2603 5.2751 20 1 6.9158 -2.6886 4.8818 21 1 7.6884 -1.1576 6.5964 22 1 5.6580 -0.6718 5.3628 23 1 -0.3633 0.6009 0.8335 24 1 -0.3632 0.4214 -0.9373 25 1 -0.3633 -1.0225 0.1036 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.0383 1.5541 -2.1527 29 1 0.5582 2.1765 -1.3828 30 1 5.1701 4.9732 -1.1261 31 1 3.7888 5.4191 -2.1563 32 1 3.6318 5.4743 -0.3842 33 1 3.6209 3.3822 0.9352 34 1 5.1152 2.7961 0.1639 35 1 3.4435 1.1997 2.2114 36 1 3.6491 -0.3036 1.2808 37 1 5.9337 0.4097 0.6329 38 1 5.7283 1.9130 1.5635 39 1 5.4042 0.5880 3.6338 40 1 5.6095 -0.9157 2.7038 41 1 9.7660 -0.6434 4.8861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:14 Heat of formation + Delta-G solvation = -82.325201 kcal Electronic energy + Delta-G solvation = -18111.872453 eV Core-core repulsion = 15411.195739 eV Total energy + Delta-G solvation = -2700.676714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02038 -37.71258 -36.04500 -35.03138 -33.47728 -32.36518 -29.50665 -27.99680 -27.01718 -24.78002 -23.56460 -22.26301 -21.66646 -20.98678 -18.90517 -17.63148 -17.27963 -16.59346 -16.28197 -16.05290 -15.56269 -15.48468 -15.00116 -14.70857 -14.54063 -14.09250 -13.77781 -13.51274 -13.31211 -13.19984 -13.05249 -12.69477 -12.57202 -12.33092 -12.16649 -12.09795 -11.78779 -11.69983 -11.59519 -11.40889 -11.27329 -11.19462 -10.77308 -10.48582 -9.38052 -8.30653 -6.34992 1.34630 1.36528 1.48456 2.35069 2.69945 2.82716 3.04606 3.72348 3.82195 3.88206 4.07236 4.11115 4.19513 4.24557 4.35442 4.43069 4.51998 4.57363 4.62450 4.65091 4.69469 4.78428 4.81945 4.87272 4.93264 4.96975 5.05225 5.10046 5.19564 5.25208 5.26444 5.39827 5.46783 5.55738 5.63932 5.96701 6.04634 6.22076 6.27996 6.72895 7.29679 8.86322 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025609 B = 0.005547 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.086955 B = 5046.113983 C = 5967.127515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.048 3.952 4 H 0.037 0.963 5 C 0.071 3.929 6 O -0.398 6.398 7 C 0.090 3.910 8 H 0.066 0.934 9 C -0.141 4.141 10 C 0.020 3.980 11 N -0.540 5.540 12 C 0.064 3.936 13 C -0.092 4.092 14 C -0.009 4.009 15 C -0.533 4.533 16 H 0.030 0.970 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.952 3.048 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.248 1.248 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.322 4.223 -10.293 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.061 4.061 4 H 0.055 0.945 5 C -0.006 4.006 6 O -0.317 6.317 7 C 0.033 3.967 8 H 0.084 0.916 9 C -0.198 4.198 10 C -0.108 4.108 11 N -0.264 5.264 12 C -0.063 4.063 13 C -0.130 4.130 14 C -0.047 4.047 15 C -0.571 4.571 16 H 0.049 0.951 17 C -0.193 4.193 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.171 1.171 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.105 4.100 -10.614 22.237 hybrid contribution 0.335 -0.198 1.545 1.593 sum -18.770 3.902 -9.070 21.208 Atomic orbital electron populations 1.21776 0.93685 1.02603 1.02432 1.21564 0.97016 0.93983 1.02877 1.22458 0.87133 0.98078 0.98424 0.94490 1.22850 0.99764 0.82588 0.95407 1.87936 1.21208 1.28370 1.94188 1.22228 0.81094 0.97807 0.95620 0.91627 1.21747 1.01850 0.92923 1.03312 1.22906 1.01391 0.88656 0.97894 1.62303 1.10421 1.15590 1.38124 1.22141 0.95233 0.99416 0.89554 1.21379 0.93955 0.99789 0.97851 1.19478 0.94063 0.96162 0.94974 1.21481 0.92974 1.34101 1.08531 0.95126 1.26041 0.95898 0.97022 1.00370 1.70074 1.10472 1.46894 1.31834 0.85630 0.79700 0.79418 0.77729 1.18930 1.20915 1.17137 0.92824 0.91308 0.91521 0.90918 0.92125 0.92103 0.86428 0.89950 0.90609 0.92195 0.95068 0.89691 0.95512 0.89772 0.92991 0.93276 0.96506 0.96136 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.53 71.98 0.69 -1.50 16 2 C -0.12 -2.34 5.25 30.59 0.16 -2.18 16 3 C 0.05 1.13 2.05 44.93 0.09 1.22 16 4 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 5 C 0.07 1.49 5.98 72.02 0.43 1.92 16 6 O -0.40 -10.00 10.47 -148.98 -1.56 -11.56 16 7 C 0.09 2.20 3.43 30.62 0.10 2.31 16 8 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 9 C -0.14 -2.82 9.57 71.98 0.69 -2.13 16 10 C 0.02 0.56 4.42 86.31 0.38 0.94 16 11 N -0.54 -15.59 4.65 -870.00 -4.04 -19.63 16 12 C 0.06 2.07 4.55 86.31 0.39 2.46 16 13 C -0.09 -3.68 4.66 30.59 0.14 -3.54 16 14 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 15 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 16 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 17 C 0.00 0.19 5.47 84.65 0.46 0.66 16 18 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 19 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.25 -10.81 6.54 99.48 0.65 -10.15 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 0.84 6.95 -2.39 -0.02 0.82 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.35 6.18 -2.38 -0.01 1.33 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 1.91 6.88 -2.39 -0.02 1.89 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 2.59 6.06 -2.39 -0.01 2.58 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 2.59 6.40 -2.39 -0.02 2.58 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.00 6.27 -2.39 -0.01 1.98 16 39 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 40 H 0.02 0.93 7.57 -2.38 -0.02 0.92 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -66.60 313.40 1.40 -65.20 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.91 Total: 10.94 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 3.91 Total: -31.27 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.74 Total: -79.88 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.56 Total: -11.56 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -66.60 1.40 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds