Wall clock time and date at job start Sun Mar 29 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46725 * 2 1 4 4 H 1.08996 * 109.54587 * 305.43316 * 3 2 1 5 5 C 1.53097 * 109.50879 * 65.54192 * 3 2 1 6 6 O 1.43007 * 109.26374 * 176.78411 * 5 3 2 7 7 C 1.43021 * 113.73854 * 301.32486 * 6 5 3 8 8 H 1.08999 * 109.50906 * 178.60012 * 7 6 5 9 9 C 1.52996 * 109.50734 * 298.69301 * 7 6 5 10 10 C 1.53102 * 109.25346 * 58.66855 * 7 6 5 11 11 N 1.47014 * 109.26024 * 303.15230 * 10 7 6 12 12 C 1.46898 * 111.00179 * 182.39261 * 11 10 7 13 13 C 1.53007 * 109.46984 * 52.06788 * 12 11 10 14 14 C 1.53000 * 109.47115 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47146 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99633 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99797 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00203 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47174 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47279 * 120.00229 * 19 17 15 22 22 H 1.48501 * 109.46625 * 239.99635 * 19 17 15 23 23 H 1.09005 * 109.46530 * 174.25126 * 1 2 3 24 24 H 1.09000 * 109.47141 * 294.24948 * 1 2 3 25 25 H 1.08995 * 109.47018 * 54.25359 * 1 2 3 26 26 H 1.08993 * 109.47370 * 240.00078 * 2 1 3 27 27 H 1.09001 * 109.47180 * 119.99795 * 2 1 3 28 28 H 1.09002 * 109.50671 * 296.71871 * 5 3 2 29 29 H 1.08998 * 109.50827 * 56.80071 * 5 3 2 30 30 H 1.09004 * 109.46922 * 59.99560 * 9 7 6 31 31 H 1.09000 * 109.47031 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.46942 * 299.99688 * 9 7 6 33 33 H 1.09008 * 109.50561 * 183.21501 * 10 7 6 34 34 H 1.09000 * 109.50714 * 63.08879 * 10 7 6 35 35 H 1.08994 * 109.47508 * 172.06758 * 12 11 10 36 36 H 1.08995 * 109.47341 * 292.07211 * 12 11 10 37 37 H 1.09004 * 109.46910 * 300.00180 * 13 12 11 38 38 H 1.09002 * 109.47136 * 60.00022 * 13 12 11 39 39 H 1.09004 * 109.46693 * 300.00302 * 14 13 12 40 40 H 1.09002 * 109.47182 * 59.99951 * 14 13 12 41 41 H 0.97008 * 119.99685 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6000 1.9848 -0.8369 5 6 1.6470 2.1237 1.3136 6 8 2.1900 3.4464 1.3400 7 6 3.6144 3.4865 1.2178 8 1 3.9510 4.5233 1.2211 9 6 4.2492 2.7395 2.3924 10 6 4.0273 2.8192 -0.0968 11 7 3.5044 1.4455 -0.1285 12 6 3.9270 0.7494 -1.3511 13 6 5.4448 0.8656 -1.5054 14 6 5.8849 0.1411 -2.7791 15 6 7.3800 0.2551 -2.9308 16 1 7.9582 0.7910 -2.1927 17 6 8.0093 -0.3249 -4.0117 18 7 7.3050 -0.9771 -4.9107 19 14 9.8626 -0.1843 -4.1993 20 1 10.4175 0.5944 -3.0631 21 1 10.4636 -1.5422 -4.2098 22 1 10.1799 0.5073 -5.4746 23 1 -0.3632 -1.0226 -0.1029 24 1 -0.3633 0.4221 0.9370 25 1 -0.3633 0.6003 -0.8340 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5606 2.1748 1.3863 29 1 2.0413 1.5508 2.1528 30 1 3.9134 1.7025 2.3876 31 1 5.3347 2.7701 2.2985 32 1 3.9517 3.2134 3.3278 33 1 5.1149 2.7964 -0.1675 34 1 3.6192 3.3834 -0.9353 35 1 3.6480 -0.3022 -1.2854 36 1 3.4385 1.2017 -2.2140 37 1 5.7239 1.9173 -1.5711 38 1 5.9335 0.4133 -0.6424 39 1 5.6057 -0.9105 -2.7138 40 1 5.3963 0.5938 -3.6419 41 1 7.7479 -1.3854 -5.6710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:16 Heat of formation + Delta-G solvation = -81.719866 kcal Electronic energy + Delta-G solvation = -18226.659655 eV Core-core repulsion = 15526.009190 eV Total energy + Delta-G solvation = -2700.650465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15370 -37.69100 -35.98709 -35.00283 -33.20133 -31.88966 -29.32899 -28.22002 -26.81851 -25.26418 -23.93100 -22.19961 -21.68361 -20.32563 -18.55261 -17.63242 -17.34394 -16.52563 -16.26423 -16.08651 -15.76115 -15.42443 -14.89090 -14.56214 -14.29877 -14.12879 -13.67450 -13.53219 -13.41745 -13.01190 -12.81900 -12.69035 -12.53949 -12.44037 -12.26058 -12.13936 -11.92781 -11.65812 -11.45244 -11.36078 -11.16229 -11.07974 -10.57314 -10.46816 -9.32986 -8.21520 -6.32677 1.39463 1.39574 1.53205 2.39777 2.74949 2.92439 3.11905 3.76698 3.84167 3.94060 4.06815 4.11771 4.20204 4.29386 4.41164 4.43450 4.52619 4.61118 4.64650 4.68411 4.72214 4.82704 4.88493 4.95872 4.99152 5.04661 5.12202 5.18092 5.24179 5.26377 5.38136 5.43506 5.49787 5.70676 5.83245 5.98846 6.07316 6.22780 6.24964 6.84207 7.36880 8.90758 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030145 B = 0.005117 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.605805 B = 5470.369095 C = 6178.708866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.048 3.952 4 H 0.033 0.967 5 C 0.069 3.931 6 O -0.396 6.396 7 C 0.090 3.910 8 H 0.118 0.882 9 C -0.168 4.168 10 C 0.017 3.983 11 N -0.529 5.529 12 C 0.067 3.933 13 C -0.092 4.092 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.055 0.945 39 H -0.008 1.008 40 H -0.013 1.013 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 6.095 13.866 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.061 4.061 4 H 0.051 0.949 5 C -0.008 4.008 6 O -0.315 6.315 7 C 0.032 3.968 8 H 0.135 0.865 9 C -0.225 4.225 10 C -0.111 4.111 11 N -0.254 5.254 12 C -0.061 4.061 13 C -0.129 4.129 14 C -0.011 4.011 15 C -0.579 4.579 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.204 1.204 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.010 0.990 40 H 0.005 0.995 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.556 5.923 14.147 19.203 hybrid contribution 0.807 -0.028 -1.578 1.773 sum -10.748 5.895 12.569 17.557 Atomic orbital electron populations 1.21773 0.93690 1.02539 1.02453 1.21553 0.97037 0.94214 1.02655 1.22445 0.87381 0.97830 0.98443 0.94938 1.22837 0.99559 0.83066 0.95333 1.87988 1.21225 1.28208 1.94039 1.22380 0.80568 1.00616 0.93223 0.86475 1.22199 1.01416 1.01328 0.97559 1.22904 1.01619 0.88787 0.97760 1.62316 1.10175 1.15539 1.37329 1.22072 0.95766 0.98891 0.89329 1.21472 0.93658 0.99767 0.98035 1.18966 0.95137 0.94322 0.92715 1.21698 0.93978 1.33962 1.08224 0.92186 1.25991 1.03674 0.94740 0.95457 1.70110 1.37670 1.36658 1.13058 0.85389 0.79178 0.78107 0.78321 1.18510 1.20285 1.20387 0.91617 0.91058 0.92993 0.92749 0.90766 0.86776 0.91493 0.91980 0.91325 0.91379 0.89278 0.95483 0.90697 0.96561 0.92969 0.92595 0.98952 0.99452 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.54 71.98 0.69 -1.80 16 2 C -0.12 -2.62 5.25 30.59 0.16 -2.45 16 3 C 0.05 1.21 2.04 44.93 0.09 1.30 16 4 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 5 C 0.07 1.49 5.58 72.01 0.40 1.89 16 6 O -0.40 -9.95 10.64 -148.98 -1.59 -11.53 16 7 C 0.09 2.12 3.92 30.63 0.12 2.24 16 8 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 9 C -0.17 -3.57 8.89 71.98 0.64 -2.93 16 10 C 0.02 0.50 4.54 86.32 0.39 0.89 16 11 N -0.53 -15.78 4.01 -869.99 -3.49 -19.27 16 12 C 0.07 2.40 4.56 86.31 0.39 2.79 16 13 C -0.09 -3.86 4.65 30.60 0.14 -3.71 16 14 C 0.03 1.41 4.97 29.85 0.15 1.56 16 15 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 18 N -0.93 -57.56 13.29 21.44 0.28 -57.28 16 19 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 0.97 6.95 -2.39 -0.02 0.95 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 1.41 6.18 -2.39 -0.01 1.40 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.11 1.97 6.88 -2.39 -0.02 1.95 16 29 H 0.07 1.39 6.50 -2.39 -0.02 1.37 16 30 H 0.06 1.46 6.13 -2.38 -0.01 1.44 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 2.64 6.06 -2.38 -0.01 2.63 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 2.69 6.40 -2.39 -0.02 2.67 16 36 H 0.02 0.61 8.13 -2.39 -0.02 0.59 16 37 H 0.05 2.14 6.27 -2.38 -0.01 2.13 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 40 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -64.59 312.42 2.08 -62.52 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.97 Total: 9.76 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.87 Total: -30.83 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -3.21 Total: -76.55 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.59 Total: -11.53 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.59 2.08 -62.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.204 kcal (2) G-P(sol) polarization free energy of solvation -64.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds