Wall clock time and date at job start Sun Mar 29 2020 23:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46941 * 2 1 4 4 C 1.42907 * 113.99582 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.49951 * 330.07236 * 4 3 2 6 6 C 1.53113 * 109.50344 * 90.19483 * 4 3 2 7 7 C 1.53123 * 109.15981 * 177.59491 * 6 4 3 8 8 C 1.53042 * 109.27583 * 302.34660 * 7 6 4 9 9 N 1.46841 * 109.52632 * 59.17806 * 8 7 6 10 10 C 1.46899 * 110.99984 * 174.15849 * 9 8 7 11 11 H 1.08999 * 109.47043 * 65.45702 * 10 9 8 12 12 C 1.50702 * 109.47101 * 185.45395 * 10 9 8 13 13 H 1.08004 * 120.00024 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00113 * 180.02562 * 12 10 9 15 15 N 1.31507 * 119.99816 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99970 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47150 * 59.99790 * 16 14 12 18 18 H 1.48495 * 109.46944 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46952 * 300.00149 * 16 14 12 20 20 C 1.52996 * 109.47482 * 305.45370 * 10 9 8 21 21 C 1.53003 * 109.47152 * 301.85393 * 20 10 9 22 22 C 1.46851 * 111.19827 * 298.25734 * 9 8 7 23 23 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47391 * 300.00462 * 1 2 3 25 25 H 1.08999 * 109.46861 * 60.00094 * 1 2 3 26 26 H 1.08998 * 109.46885 * 239.99520 * 2 1 3 27 27 H 1.08999 * 109.46861 * 119.99906 * 2 1 3 28 28 H 1.09005 * 109.52491 * 297.49904 * 6 4 3 29 29 H 1.09002 * 109.52513 * 57.69093 * 6 4 3 30 30 H 1.08997 * 109.50350 * 182.40470 * 7 6 4 31 31 H 1.08996 * 109.53459 * 62.30446 * 7 6 4 32 32 H 1.09006 * 109.46144 * 299.15983 * 8 7 6 33 33 H 1.09004 * 109.45106 * 179.18998 * 8 7 6 34 34 H 0.97005 * 119.99877 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.46674 * 61.84885 * 20 10 9 36 36 H 1.09001 * 109.47184 * 181.85109 * 20 10 9 37 37 H 1.09005 * 109.47077 * 64.74478 * 21 20 10 38 38 H 1.08995 * 109.47144 * 184.74535 * 21 20 10 39 39 H 1.09001 * 109.47095 * 304.74378 * 21 20 10 40 40 H 1.09000 * 109.46300 * 301.72526 * 22 9 8 41 41 H 1.09003 * 109.46014 * 181.75387 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8641 0.6010 0.5117 6 6 3.9395 1.5055 -1.4441 7 6 5.4600 1.6867 -1.4357 8 6 5.8121 2.9658 -0.6728 9 7 5.3047 2.8727 0.7020 10 6 5.7437 4.0225 1.5041 11 1 5.2908 4.9331 1.1121 12 6 5.3191 3.8269 2.9368 13 1 4.7777 2.9372 3.2230 14 6 5.6217 4.7837 3.8823 15 7 6.2805 5.8672 3.5338 16 14 5.0960 4.5409 5.6583 17 1 5.7139 3.3007 6.1924 18 1 5.5385 5.7037 6.4689 19 1 3.6170 4.4254 5.7254 20 6 7.2675 4.1403 1.4355 21 6 7.9027 2.8441 1.9428 22 6 3.8419 2.7458 0.7207 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.6866 0.5731 -1.9490 29 1 3.4759 2.3417 -1.9675 30 1 5.8230 1.7626 -2.4606 31 1 5.9263 0.8314 -0.9469 32 1 5.3574 3.8224 -1.1705 33 1 6.8949 3.0901 -0.6527 34 1 6.4931 6.5405 4.1989 35 1 7.5723 4.3146 0.4036 36 1 7.5959 4.9734 2.0570 37 1 7.6424 2.0252 1.2721 38 1 8.9862 2.9582 1.9734 39 1 7.5320 2.6255 2.9442 40 1 3.3964 3.6033 0.2165 41 1 3.4936 2.7103 1.7530 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042422293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:36 Heat of formation + Delta-G solvation = -57.121960 kcal Electronic energy + Delta-G solvation = -18653.968971 eV Core-core repulsion = 15954.385151 eV Total energy + Delta-G solvation = -2699.583820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00568 -37.09298 -34.37281 -31.87854 -31.25584 -30.57183 -28.63738 -26.44597 -24.03606 -22.98691 -22.26808 -21.97894 -19.71165 -18.74827 -16.56427 -15.92076 -15.58034 -15.33201 -14.66932 -14.29046 -13.79579 -13.30177 -13.24104 -13.17050 -12.62415 -12.59000 -12.09041 -11.82407 -11.79557 -11.64248 -11.31706 -10.92821 -10.81869 -10.63985 -10.52209 -10.35544 -10.31454 -10.11021 -9.85848 -9.60729 -9.46694 -9.02408 -8.77208 -8.36330 -7.13246 -5.97482 -4.00910 3.34498 3.38726 3.41779 3.84165 4.43961 5.03111 5.07888 5.20585 5.27042 5.32909 5.35922 5.39220 5.43789 5.66918 5.70354 5.92459 5.93226 6.02267 6.11408 6.15475 6.23404 6.28814 6.38980 6.50886 6.54149 6.62484 6.70230 6.75838 6.84478 7.13064 7.33170 7.44228 7.54323 7.69275 7.78457 7.86680 8.21975 8.36575 8.63144 9.03880 9.62848 11.08892 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.007726 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.824849 B = 3623.250007 C = 4626.288191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.385 6.385 4 C 0.093 3.907 5 H 0.064 0.936 6 C -0.137 4.137 7 C -0.112 4.112 8 C 0.047 3.953 9 N -0.526 5.526 10 C 0.219 3.781 11 H -0.002 1.002 12 C -0.496 4.496 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.113 4.113 21 C -0.121 4.121 22 C 0.071 3.929 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.260 0.740 35 H 0.015 0.985 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.015 0.985 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 -9.322 -7.983 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.304 6.304 4 C 0.035 3.965 5 H 0.082 0.918 6 C -0.175 4.175 7 C -0.150 4.150 8 C -0.081 4.081 9 N -0.252 5.252 10 C 0.114 3.886 11 H 0.015 0.985 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.151 4.151 21 C -0.179 4.179 22 C -0.057 4.057 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.432 -9.401 -7.682 12.924 hybrid contribution -0.430 0.446 0.540 0.823 sum -4.863 -8.955 -7.141 12.443 Atomic orbital electron populations 1.21735 0.94238 1.01744 1.03027 1.22420 0.95142 0.84614 0.99679 1.87882 1.21863 1.25623 1.95054 1.22184 0.79539 0.99847 0.94938 0.91765 1.22053 0.96626 1.01321 0.97523 1.21536 0.94785 0.99303 0.99348 1.22141 1.00738 0.95086 0.90174 1.61948 1.08024 1.46043 1.09229 1.19246 0.92014 0.85345 0.92039 0.98470 1.21020 1.35337 1.04889 0.92232 0.92059 1.24889 0.95284 0.95172 0.98727 1.69863 1.40168 1.09181 1.34023 0.86639 0.78971 0.77491 0.84799 1.20270 1.21423 1.20364 1.21607 0.97129 0.99094 0.97285 1.21480 0.96206 0.98116 1.02068 1.21838 0.89304 0.93546 1.01031 0.91539 0.91827 0.92114 0.93961 0.93531 0.92777 0.91864 0.92224 0.91471 0.96223 0.90410 0.92978 0.96679 0.88873 0.94166 0.96549 0.92141 0.95643 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.75 6.47 37.16 0.24 0.99 16 3 O -0.39 -6.43 9.99 -35.23 -0.35 -6.78 16 4 C 0.09 1.58 2.77 -26.65 -0.07 1.51 16 5 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 6 C -0.14 -2.06 5.62 -26.61 -0.15 -2.21 16 7 C -0.11 -1.68 6.09 -26.65 -0.16 -1.84 16 8 C 0.05 0.86 4.87 -3.83 -0.02 0.85 16 9 N -0.53 -11.20 3.79 -228.07 -0.86 -12.06 16 10 C 0.22 5.46 1.76 -68.87 -0.12 5.33 16 11 H 0.00 -0.06 8.14 -51.93 -0.42 -0.49 16 12 C -0.50 -13.32 6.61 -34.44 -0.23 -13.55 16 13 H 0.06 1.66 6.79 -52.48 -0.36 1.30 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -25.22 11.31 55.43 0.63 -24.60 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.11 -2.68 4.95 -26.73 -0.13 -2.81 16 21 C -0.12 -2.65 9.43 37.16 0.35 -2.30 16 22 C 0.07 1.46 4.92 -3.83 -0.02 1.45 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.49 7.95 -51.93 -0.41 0.08 16 27 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 1.43 5.64 -51.93 -0.29 1.14 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.01 0.32 6.31 -51.93 -0.33 0.00 16 36 H 0.09 2.47 6.03 -51.93 -0.31 2.16 16 37 H 0.04 0.82 7.28 -51.93 -0.38 0.44 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 1.44 7.12 -51.93 -0.37 1.07 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 2.02 6.38 -51.93 -0.33 1.68 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -27.85 312.08 -8.32 -36.16 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.38 Total: -1.47 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.03 Total: -12.26 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.24 Total: -36.66 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.35 Total: -6.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.85 -8.32 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.960 kcal (2) G-P(sol) polarization free energy of solvation -27.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds