Wall clock time and date at job start Sun Mar 29 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47613 * 2 1 4 4 H 1.09008 * 109.46553 * 305.83445 * 3 2 1 5 5 C 1.50698 * 109.47135 * 65.82744 * 3 2 1 6 6 H 1.08004 * 119.99348 * 87.67235 * 5 3 2 7 7 C 1.37876 * 120.00266 * 267.67223 * 5 3 2 8 8 N 1.31513 * 119.99981 * 354.49054 * 7 5 3 9 9 Si 1.86807 * 119.99939 * 174.48691 * 7 5 3 10 10 H 1.48493 * 109.46924 * 90.00096 * 9 7 5 11 11 H 1.48500 * 109.46983 * 210.00329 * 9 7 5 12 12 H 1.48501 * 109.47146 * 330.00137 * 9 7 5 13 13 N 1.46893 * 109.47703 * 185.83319 * 3 2 1 14 14 C 1.46907 * 110.99900 * 309.60171 * 13 3 2 15 15 C 1.46907 * 111.00326 * 73.55116 * 13 3 2 16 16 C 1.53000 * 109.46990 * 75.74131 * 15 13 3 17 17 H 1.08998 * 109.48019 * 299.84213 * 16 15 13 18 18 C 1.53088 * 109.48039 * 179.81610 * 16 15 13 19 19 C 1.53178 * 109.16261 * 182.42245 * 18 16 15 20 20 C 1.53174 * 109.04587 * 56.96341 * 19 18 16 21 21 C 1.53089 * 109.16599 * 303.02799 * 20 19 18 22 22 O 1.42902 * 109.41432 * 57.60532 * 21 20 19 23 23 H 1.08998 * 109.46969 * 55.66884 * 1 2 3 24 24 H 1.09000 * 109.47214 * 175.67635 * 1 2 3 25 25 H 1.09008 * 109.46803 * 295.66987 * 1 2 3 26 26 H 1.09008 * 109.47117 * 240.00282 * 2 1 3 27 27 H 1.09005 * 109.47609 * 120.00457 * 2 1 3 28 28 H 0.97003 * 119.99585 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46811 * 66.21538 * 14 13 3 30 30 H 1.08997 * 109.47233 * 186.21995 * 14 13 3 31 31 H 1.08996 * 109.46465 * 306.21979 * 14 13 3 32 32 H 1.08992 * 109.47413 * 195.74664 * 15 13 3 33 33 H 1.09004 * 109.46941 * 315.74891 * 15 13 3 34 34 H 1.08996 * 109.52567 * 302.31598 * 18 16 15 35 35 H 1.09000 * 109.51981 * 62.50465 * 18 16 15 36 36 H 1.08998 * 109.53607 * 297.09775 * 19 18 16 37 37 H 1.08996 * 109.61939 * 176.88087 * 19 18 16 38 38 H 1.08997 * 109.52568 * 183.11742 * 20 19 18 39 39 H 1.09006 * 109.52270 * 62.92814 * 20 19 18 40 40 H 1.09001 * 109.47861 * 297.62837 * 21 20 19 41 41 H 1.08991 * 109.49491 * 177.59873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5939 1.9855 -0.8332 5 6 1.6591 2.1100 1.2962 6 1 2.3096 2.0329 2.1549 7 6 0.4801 2.8192 1.3860 8 7 -0.2587 3.0050 0.3139 9 14 -0.0679 3.5160 3.0303 10 1 0.4796 4.8866 3.1942 11 1 -1.5513 3.5667 3.0768 12 1 0.4324 2.6487 4.1269 13 7 3.5023 1.4449 -0.1407 14 6 4.1261 0.5362 0.8304 15 6 3.8997 1.1022 -1.5129 16 6 3.6600 2.3043 -2.4285 17 1 2.6023 2.5670 -2.4141 18 6 4.0784 1.9490 -3.8576 19 6 3.8924 3.1758 -4.7557 20 6 4.7056 4.3414 -4.1845 21 6 4.2628 4.6042 -2.7428 22 8 4.4332 3.4148 -1.9692 23 1 -0.3633 0.5796 -0.8486 24 1 -0.3633 -1.0247 -0.0775 25 1 -0.3633 0.4452 0.9263 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 -1.0880 3.5043 0.3771 29 1 3.8474 -0.4916 0.5974 30 1 5.2101 0.6391 0.7801 31 1 3.7836 0.7868 1.8344 32 1 4.9569 0.8378 -1.5296 33 1 3.3079 0.2559 -1.8619 34 1 5.1257 1.6469 -3.8662 35 1 3.4594 1.1307 -4.2256 36 1 2.8374 3.4481 -4.7870 37 1 4.2401 2.9479 -5.7633 38 1 4.5353 5.2340 -4.7864 39 1 5.7657 4.0878 -4.1994 40 1 3.2130 4.8971 -2.7327 41 1 4.8676 5.4047 -2.3168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042464123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:21 Heat of formation + Delta-G solvation = -56.535884 kcal Electronic energy + Delta-G solvation = -18881.305937 eV Core-core repulsion = 16181.747531 eV Total energy + Delta-G solvation = -2699.558406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03452 -37.04915 -33.21089 -33.07242 -31.39946 -30.60616 -27.02340 -26.50817 -24.34227 -23.55055 -22.38556 -21.32978 -19.90339 -18.69484 -16.38701 -15.75863 -15.57770 -14.71078 -14.43135 -14.29923 -13.93190 -13.79519 -13.30457 -13.07465 -12.63200 -12.29567 -12.20526 -11.76777 -11.44391 -11.33241 -10.95751 -10.87394 -10.82712 -10.74747 -10.61564 -10.35435 -10.24049 -10.22534 -9.82950 -9.72800 -9.29025 -8.87511 -8.78728 -8.29811 -6.92756 -5.94345 -3.93143 3.35548 3.42017 3.45550 4.34532 4.48821 4.85742 5.03657 5.11230 5.17286 5.35527 5.56554 5.59755 5.74789 5.81275 5.95228 6.02734 6.06315 6.08188 6.13952 6.19732 6.26465 6.34030 6.36131 6.40254 6.45882 6.48866 6.65873 6.69622 6.79606 6.98426 7.24108 7.32531 7.58081 7.66906 7.88560 7.95348 8.20921 8.50282 8.73171 9.12418 9.67967 11.14363 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.007741 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.953584 B = 3616.057160 C = 4007.954914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.140 4.140 3 C 0.200 3.800 4 H 0.068 0.932 5 C -0.488 4.488 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.523 5.523 14 C 0.035 3.965 15 C 0.061 3.939 16 C 0.100 3.900 17 H 0.064 0.936 18 C -0.150 4.150 19 C -0.120 4.120 20 C -0.155 4.155 21 C 0.059 3.941 22 O -0.354 6.354 23 H 0.052 0.948 24 H 0.011 0.989 25 H 0.063 0.937 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.258 0.742 29 H 0.010 0.990 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 -1.400 -8.046 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.094 3.906 4 H 0.086 0.914 5 C -0.527 4.527 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.245 5.245 14 C -0.113 4.113 15 C -0.068 4.068 16 C 0.042 3.958 17 H 0.082 0.918 18 C -0.189 4.189 19 C -0.158 4.158 20 C -0.193 4.193 21 C -0.018 4.018 22 O -0.272 6.272 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.880 -0.845 -7.830 10.458 hybrid contribution -0.861 -0.381 0.384 1.017 sum 6.019 -1.226 -7.446 9.653 Atomic orbital electron populations 1.21422 0.95793 0.96869 1.03451 1.22239 0.96953 1.01306 0.97450 1.19654 0.80961 0.90600 0.99388 0.91388 1.20953 1.04051 1.31464 0.96191 0.92634 1.24858 0.97012 0.95523 0.96123 1.69936 1.14302 1.41379 1.27429 0.86674 0.77525 0.79528 0.84717 1.20778 1.21420 1.20025 1.62459 1.12093 1.49354 1.00614 1.22221 0.97480 0.93478 0.98170 1.22034 0.99569 0.93833 0.91357 1.22093 0.95399 0.87456 0.90884 0.91826 1.22211 1.02044 0.97996 0.96603 1.21553 1.00433 0.95348 0.98461 1.22203 1.00531 0.98603 0.97918 1.22472 1.00503 0.88658 0.90201 1.88055 1.66901 1.18908 1.53367 0.92914 0.96944 0.91829 0.96267 0.93954 0.93186 0.97165 0.93898 0.91139 0.92143 0.94257 0.91578 0.91361 0.91824 0.92141 0.91596 0.91560 0.93350 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 8.74 37.16 0.32 -2.35 16 2 C -0.14 -3.16 4.43 -26.73 -0.12 -3.27 16 3 C 0.20 4.95 1.81 -68.87 -0.12 4.82 16 4 H 0.07 1.88 5.74 -51.92 -0.30 1.58 16 5 C -0.49 -13.30 7.69 -34.44 -0.26 -13.56 16 6 H 0.06 1.54 6.56 -52.48 -0.34 1.19 16 7 C 0.07 1.81 4.26 -17.82 -0.08 1.74 16 8 N -0.89 -24.94 11.71 55.43 0.65 -24.29 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.52 -11.69 4.47 -236.28 -1.06 -12.75 16 14 C 0.04 0.70 8.49 60.07 0.51 1.21 16 15 C 0.06 1.16 4.59 -3.82 -0.02 1.15 16 16 C 0.10 1.85 2.70 -26.69 -0.07 1.77 16 17 H 0.06 1.35 6.77 -51.93 -0.35 1.00 16 18 C -0.15 -2.17 5.42 -26.59 -0.14 -2.31 16 19 C -0.12 -1.55 6.03 -26.55 -0.16 -1.71 16 20 C -0.15 -1.98 6.14 -26.60 -0.16 -2.14 16 21 C 0.06 0.94 6.84 37.20 0.25 1.19 16 22 O -0.35 -6.93 10.27 -35.23 -0.36 -7.30 16 23 H 0.05 1.25 8.00 -51.93 -0.42 0.84 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 1.58 6.60 -51.92 -0.34 1.24 16 26 H 0.02 0.40 6.49 -51.92 -0.34 0.06 16 27 H 0.04 0.95 6.82 -51.93 -0.35 0.59 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.01 0.19 6.73 -51.93 -0.35 -0.16 16 30 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.07 1.49 6.53 -51.93 -0.34 1.15 16 32 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 33 H 0.04 0.73 6.33 -51.93 -0.33 0.40 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -28.58 308.62 -8.42 -37.01 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.23 Total: -0.29 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.05 Total: -13.47 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.41 Total: -37.03 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.36 Total: -7.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.58 -8.42 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042464123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.530 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds