Wall clock time and date at job start Sun Mar 29 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47613 * 2 1 4 4 H 1.09008 * 109.46553 * 305.83445 * 3 2 1 5 5 C 1.50698 * 109.47135 * 65.82744 * 3 2 1 6 6 H 1.08004 * 119.99348 * 87.67235 * 5 3 2 7 7 C 1.37876 * 120.00266 * 267.67223 * 5 3 2 8 8 N 1.31513 * 119.99981 * 354.49054 * 7 5 3 9 9 Si 1.86807 * 119.99939 * 174.48691 * 7 5 3 10 10 H 1.48493 * 109.46924 * 90.00096 * 9 7 5 11 11 H 1.48500 * 109.46983 * 210.00329 * 9 7 5 12 12 H 1.48501 * 109.47146 * 330.00137 * 9 7 5 13 13 N 1.46893 * 109.47703 * 185.83319 * 3 2 1 14 14 C 1.46907 * 110.99900 * 309.60171 * 13 3 2 15 15 C 1.46907 * 111.00326 * 73.55116 * 13 3 2 16 16 C 1.53000 * 109.46990 * 75.74131 * 15 13 3 17 17 H 1.08998 * 109.48019 * 299.84213 * 16 15 13 18 18 C 1.53088 * 109.48039 * 179.81610 * 16 15 13 19 19 C 1.53178 * 109.16261 * 182.42245 * 18 16 15 20 20 C 1.53174 * 109.04587 * 56.96341 * 19 18 16 21 21 C 1.53089 * 109.16599 * 303.02799 * 20 19 18 22 22 O 1.42902 * 109.41432 * 57.60532 * 21 20 19 23 23 H 1.08998 * 109.46969 * 55.66884 * 1 2 3 24 24 H 1.09000 * 109.47214 * 175.67635 * 1 2 3 25 25 H 1.09008 * 109.46803 * 295.66987 * 1 2 3 26 26 H 1.09008 * 109.47117 * 240.00282 * 2 1 3 27 27 H 1.09005 * 109.47609 * 120.00457 * 2 1 3 28 28 H 0.97003 * 119.99585 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46811 * 66.21538 * 14 13 3 30 30 H 1.08997 * 109.47233 * 186.21995 * 14 13 3 31 31 H 1.08996 * 109.46465 * 306.21979 * 14 13 3 32 32 H 1.08992 * 109.47413 * 195.74664 * 15 13 3 33 33 H 1.09004 * 109.46941 * 315.74891 * 15 13 3 34 34 H 1.08996 * 109.52567 * 302.31598 * 18 16 15 35 35 H 1.09000 * 109.51981 * 62.50465 * 18 16 15 36 36 H 1.08998 * 109.53607 * 297.09775 * 19 18 16 37 37 H 1.08996 * 109.61939 * 176.88087 * 19 18 16 38 38 H 1.08997 * 109.52568 * 183.11742 * 20 19 18 39 39 H 1.09006 * 109.52270 * 62.92814 * 20 19 18 40 40 H 1.09001 * 109.47861 * 297.62837 * 21 20 19 41 41 H 1.08991 * 109.49491 * 177.59873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5939 1.9855 -0.8332 5 6 1.6591 2.1100 1.2962 6 1 2.3096 2.0329 2.1549 7 6 0.4801 2.8192 1.3860 8 7 -0.2587 3.0050 0.3139 9 14 -0.0679 3.5160 3.0303 10 1 0.4796 4.8866 3.1942 11 1 -1.5513 3.5667 3.0768 12 1 0.4324 2.6487 4.1269 13 7 3.5023 1.4449 -0.1407 14 6 4.1261 0.5362 0.8304 15 6 3.8997 1.1022 -1.5129 16 6 3.6600 2.3043 -2.4285 17 1 2.6023 2.5670 -2.4141 18 6 4.0784 1.9490 -3.8576 19 6 3.8924 3.1758 -4.7557 20 6 4.7056 4.3414 -4.1845 21 6 4.2628 4.6042 -2.7428 22 8 4.4332 3.4148 -1.9692 23 1 -0.3633 0.5796 -0.8486 24 1 -0.3633 -1.0247 -0.0775 25 1 -0.3633 0.4452 0.9263 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 -1.0880 3.5043 0.3771 29 1 3.8474 -0.4916 0.5974 30 1 5.2101 0.6391 0.7801 31 1 3.7836 0.7868 1.8344 32 1 4.9569 0.8378 -1.5296 33 1 3.3079 0.2559 -1.8619 34 1 5.1257 1.6469 -3.8662 35 1 3.4594 1.1307 -4.2256 36 1 2.8374 3.4481 -4.7870 37 1 4.2401 2.9479 -5.7633 38 1 4.5353 5.2340 -4.7864 39 1 5.7657 4.0878 -4.1994 40 1 3.2130 4.8971 -2.7327 41 1 4.8676 5.4047 -2.3168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042464123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:21 Heat of formation + Delta-G solvation = -74.240308 kcal Electronic energy + Delta-G solvation = -18882.073658 eV Core-core repulsion = 16181.747531 eV Total energy + Delta-G solvation = -2700.326127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41557 -38.74155 -34.96431 -34.40751 -33.09448 -32.24406 -28.68381 -28.20817 -25.97430 -25.06947 -23.95113 -22.91457 -21.09582 -20.51298 -18.36852 -17.31023 -16.87939 -16.47560 -16.06357 -15.61336 -15.52302 -15.30147 -14.94640 -14.63928 -14.21253 -13.86817 -13.54570 -13.40694 -13.03980 -12.82678 -12.73756 -12.65950 -12.45280 -12.21002 -12.16091 -11.96612 -11.89345 -11.72925 -11.48661 -11.28294 -11.06349 -10.80950 -10.39096 -10.16434 -8.64135 -8.03576 -6.08400 1.41045 1.43009 1.51623 2.46637 3.00301 3.18838 3.51202 3.94394 3.99870 4.02699 4.15144 4.31258 4.45018 4.48369 4.49356 4.58492 4.62006 4.74350 4.76043 4.79892 4.83118 4.90173 4.95367 5.03860 5.11007 5.12580 5.15967 5.17667 5.24549 5.33528 5.42855 5.47632 5.69634 5.77378 5.82744 6.24825 6.52807 6.72396 6.88957 7.02117 7.55527 9.03616 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.007741 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.953584 B = 3616.057160 C = 4007.954914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C 0.209 3.791 4 H 0.033 0.967 5 C -0.504 4.504 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.283 1.283 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.546 5.546 14 C 0.039 3.961 15 C 0.062 3.938 16 C 0.101 3.899 17 H 0.023 0.977 18 C -0.142 4.142 19 C -0.121 4.121 20 C -0.145 4.145 21 C 0.050 3.950 22 O -0.383 6.383 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.258 0.742 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -2.116 -8.923 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.172 4.172 3 C 0.102 3.898 4 H 0.051 0.949 5 C -0.542 4.542 6 H 0.064 0.936 7 C -0.174 4.174 8 N -0.553 5.553 9 Si 0.768 3.232 10 H -0.209 1.209 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.269 5.269 14 C -0.109 4.109 15 C -0.066 4.066 16 C 0.043 3.957 17 H 0.041 0.959 18 C -0.180 4.180 19 C -0.158 4.158 20 C -0.183 4.183 21 C -0.027 4.027 22 O -0.302 6.302 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.122 -1.566 -8.709 12.011 hybrid contribution -1.205 -0.134 0.655 1.378 sum 6.917 -1.700 -8.054 10.752 Atomic orbital electron populations 1.21297 0.95972 0.98145 1.01190 1.22103 0.96697 1.00054 0.98360 1.19352 0.82536 0.91152 0.96753 0.94923 1.21218 1.04102 1.31901 0.97015 0.93643 1.25471 0.97148 0.95991 0.98821 1.70054 1.14466 1.41956 1.28855 0.85828 0.77247 0.78648 0.81509 1.20937 1.20873 1.19478 1.62302 1.10714 1.51009 1.02884 1.22194 0.98504 0.93587 0.96604 1.22108 1.00556 0.94322 0.89614 1.22040 0.93159 0.87118 0.93403 0.95945 1.22144 1.02876 0.99102 0.93926 1.21595 1.00012 0.94637 0.99604 1.22136 1.00894 0.99659 0.95596 1.22675 0.99696 0.87851 0.92435 1.87984 1.66922 1.20123 1.55202 0.94781 0.93810 0.94386 0.94401 0.93634 0.93338 0.95886 0.91719 0.92999 0.90234 0.93718 0.90151 0.90352 0.92940 0.89167 0.89290 0.90479 0.95462 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.91 8.74 71.98 0.63 -4.28 16 2 C -0.13 -5.92 4.43 30.59 0.14 -5.78 16 3 C 0.21 10.52 1.81 44.17 0.08 10.60 16 4 H 0.03 1.88 5.74 -2.38 -0.01 1.87 16 5 C -0.50 -28.03 7.69 25.60 0.20 -27.83 16 6 H 0.05 2.57 6.56 -2.91 -0.02 2.55 16 7 C 0.02 1.38 4.26 84.65 0.36 1.74 16 8 N -0.91 -52.55 11.71 21.45 0.25 -52.30 16 9 Si 0.94 44.63 29.54 68.60 2.03 46.65 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.55 -24.42 4.47 -901.45 -4.03 -28.45 16 14 C 0.04 1.53 8.49 127.69 1.08 2.62 16 15 C 0.06 2.32 4.59 86.30 0.40 2.72 16 16 C 0.10 3.74 2.70 30.62 0.08 3.82 16 17 H 0.02 1.00 6.77 -2.39 -0.02 0.99 16 18 C -0.14 -3.84 5.42 30.68 0.17 -3.67 16 19 C -0.12 -2.85 6.03 30.71 0.19 -2.67 16 20 C -0.15 -3.39 6.14 30.68 0.19 -3.20 16 21 C 0.05 1.59 6.84 72.01 0.49 2.08 16 22 O -0.38 -15.07 10.27 -148.98 -1.53 -16.60 16 23 H 0.03 1.63 8.00 -2.39 -0.02 1.61 16 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.89 6.60 -2.38 -0.02 1.87 16 26 H 0.04 1.53 6.49 -2.38 -0.02 1.52 16 27 H 0.04 1.99 6.82 -2.38 -0.02 1.97 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.02 0.82 6.73 -2.39 -0.02 0.81 16 30 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 31 H 0.05 2.18 6.53 -2.39 -0.02 2.17 16 32 H 0.08 2.64 7.92 -2.39 -0.02 2.62 16 33 H 0.04 1.61 6.33 -2.39 -0.02 1.59 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -62.46 308.62 1.69 -60.77 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.97 Total: 13.78 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.00 Total: -23.86 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.78 Total: -80.75 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -1.53 Total: -16.60 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.46 1.69 -60.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042464123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.473 kcal (2) G-P(sol) polarization free energy of solvation -62.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds