Wall clock time and date at job start Sun Mar 29 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 H 1.09002 * 109.47333 * 319.22326 * 3 2 1 5 5 C 1.50705 * 109.46598 * 199.22904 * 3 2 1 6 6 H 1.08001 * 119.99615 * 245.36720 * 5 3 2 7 7 C 1.37871 * 120.00155 * 65.36485 * 5 3 2 8 8 N 1.31518 * 120.00008 * 200.62819 * 7 5 3 9 9 Si 1.86799 * 120.00004 * 20.63082 * 7 5 3 10 10 H 1.48507 * 109.47212 * 87.83661 * 9 7 5 11 11 H 1.48501 * 109.47260 * 207.83235 * 9 7 5 12 12 H 1.48497 * 109.47382 * 327.83404 * 9 7 5 13 13 N 1.46894 * 109.47306 * 79.22918 * 3 2 1 14 14 C 1.46905 * 111.00193 * 54.68526 * 13 3 2 15 15 C 1.46905 * 110.99838 * 290.73838 * 13 3 2 16 16 C 1.53002 * 109.46942 * 203.13243 * 15 13 3 17 17 H 1.09000 * 109.48220 * 304.97624 * 16 15 13 18 18 C 1.53283 * 109.46720 * 184.98604 * 16 15 13 19 19 C 1.53176 * 109.05991 * 182.43937 * 18 16 15 20 20 C 1.53176 * 109.11152 * 56.94684 * 19 18 16 21 21 C 1.53095 * 109.16160 * 302.97128 * 20 19 18 22 22 O 1.42900 * 109.41737 * 57.60442 * 21 20 19 23 23 H 1.09003 * 109.47507 * 183.08734 * 1 2 3 24 24 H 1.09006 * 109.47358 * 303.08838 * 1 2 3 25 25 H 1.09006 * 109.47218 * 63.08511 * 1 2 3 26 26 H 1.08997 * 109.47085 * 239.99885 * 2 1 3 27 27 H 1.09000 * 109.46996 * 119.99703 * 2 1 3 28 28 H 0.96998 * 120.00006 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47273 * 296.05085 * 14 13 3 30 30 H 1.09005 * 109.46765 * 56.04789 * 14 13 3 31 31 H 1.09004 * 109.47225 * 176.04739 * 14 13 3 32 32 H 1.08992 * 109.47439 * 83.13140 * 15 13 3 33 33 H 1.08999 * 109.46841 * 323.12358 * 15 13 3 34 34 H 1.09000 * 109.63897 * 62.52748 * 18 16 15 35 35 H 1.08995 * 109.50070 * 302.27353 * 18 16 15 36 36 H 1.08994 * 109.54735 * 297.02552 * 19 18 16 37 37 H 1.09003 * 109.54188 * 176.85011 * 19 18 16 38 38 H 1.09002 * 109.52866 * 62.87378 * 20 19 18 39 39 H 1.08996 * 109.52559 * 183.06896 * 20 19 18 40 40 H 1.08996 * 109.48647 * 177.59532 * 21 20 19 41 41 H 1.09001 * 109.47609 * 297.61539 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4273 2.0445 -0.6712 5 6 3.4722 1.4689 -0.4680 6 1 4.2563 1.7725 0.2100 7 6 3.7817 1.1055 -1.7614 8 7 5.0065 0.7351 -2.0652 9 14 2.4613 1.1393 -3.0824 10 1 2.4047 2.4926 -3.6912 11 1 2.7841 0.1381 -4.1306 12 1 1.1456 0.8140 -2.4756 13 7 1.9591 1.9905 1.3605 14 6 2.6710 1.1323 2.3169 15 6 0.5611 2.1852 1.7674 16 6 0.4939 3.2412 2.8726 17 1 1.1487 2.9499 3.6939 18 6 -0.9467 3.3549 3.3837 19 6 -1.0151 4.4563 4.4460 20 6 -0.5064 5.7685 3.8414 21 6 0.9155 5.5606 3.3135 22 8 0.9155 4.5035 2.3520 23 1 -0.3634 -1.0262 0.0553 24 1 -0.3634 0.5611 0.8610 25 1 -0.3634 0.4652 -0.9164 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.2243 0.4797 -2.9753 29 1 2.1823 0.1591 2.3655 30 1 3.7035 1.0045 1.9917 31 1 2.6554 1.5964 3.3031 32 1 0.1564 1.2440 2.1392 33 1 -0.0237 2.5189 0.9102 34 1 -1.2558 2.4061 3.8223 35 1 -1.6080 3.6068 2.5547 36 1 -0.3923 4.1813 5.2971 37 1 -2.0467 4.5822 4.7747 38 1 -1.1589 6.0691 3.0216 39 1 -0.5008 6.5444 4.6069 40 1 1.2669 6.4793 2.8437 41 1 1.5758 5.2998 4.1406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042464125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:23 Heat of formation + Delta-G solvation = -63.201540 kcal Electronic energy + Delta-G solvation = -18748.543990 eV Core-core repulsion = 16048.696540 eV Total energy + Delta-G solvation = -2699.847450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51212 -39.08235 -34.84543 -34.41759 -33.42830 -32.21006 -29.60630 -28.15369 -26.19281 -24.86173 -24.06784 -22.34780 -21.18031 -20.81573 -18.77196 -17.42386 -17.24356 -16.52185 -16.26116 -15.84318 -15.40105 -15.20408 -15.05060 -14.67872 -14.03833 -13.98572 -13.79427 -13.44713 -13.22086 -13.11680 -12.81463 -12.59789 -12.43982 -12.33012 -12.14405 -12.04152 -11.81759 -11.62624 -11.54892 -11.33509 -11.23681 -10.92654 -10.43238 -10.17742 -8.74930 -8.28239 -6.20234 1.33885 1.38571 1.47307 2.37987 2.99948 3.04739 3.27520 3.94501 4.01236 4.03625 4.16779 4.22437 4.29964 4.34832 4.43861 4.50260 4.53030 4.57481 4.70683 4.76050 4.78458 4.82990 4.92940 4.96008 5.02904 5.13486 5.16320 5.17126 5.19606 5.23729 5.26873 5.33122 5.45739 5.63877 5.68696 6.11899 6.47007 6.59651 6.80477 6.83712 7.40537 8.88370 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.006591 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.474857 B = 4247.409026 C = 4423.774804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.155 4.155 3 C 0.198 3.802 4 H 0.025 0.975 5 C -0.510 4.510 6 H 0.034 0.966 7 C 0.022 3.978 8 N -0.938 5.938 9 Si 0.921 3.079 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.232 1.232 13 N -0.537 5.537 14 C 0.038 3.962 15 C 0.058 3.942 16 C 0.097 3.903 17 H 0.051 0.949 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.151 4.151 21 C 0.050 3.950 22 O -0.393 6.393 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.264 0.736 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.469 4.804 12.932 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.194 4.194 3 C 0.090 3.910 4 H 0.043 0.957 5 C -0.548 4.548 6 H 0.052 0.948 7 C -0.176 4.176 8 N -0.578 5.578 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.154 1.154 13 N -0.260 5.260 14 C -0.110 4.110 15 C -0.070 4.070 16 C 0.039 3.961 17 H 0.069 0.931 18 C -0.185 4.185 19 C -0.156 4.156 20 C -0.188 4.188 21 C -0.026 4.026 22 O -0.313 6.313 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.067 5.231 12.603 20.328 hybrid contribution -0.030 -0.777 -0.859 1.158 sum -15.097 4.455 11.744 19.639 Atomic orbital electron populations 1.22271 0.95257 1.02178 1.02358 1.22464 0.95945 1.00042 1.00982 1.19497 0.94422 0.90073 0.87021 0.95718 1.21127 0.92677 1.43937 0.97083 0.94753 1.25623 0.97205 0.93973 1.00757 1.70152 1.22422 1.45011 1.20205 0.86204 0.82316 0.77802 0.79183 1.20548 1.21394 1.15443 1.61969 1.12721 1.48852 1.02412 1.22275 0.98758 0.94672 0.95333 1.22474 0.89942 0.96690 0.97922 1.22237 0.94770 0.83917 0.95197 0.93082 1.22210 0.95881 1.00744 0.99625 1.21579 1.02457 0.94048 0.97491 1.22165 0.96589 0.98727 1.01351 1.22707 0.96774 0.90708 0.92459 1.88066 1.87901 1.18145 1.37164 0.91974 0.90300 0.93745 0.94393 0.92097 0.92722 0.94999 0.93797 0.91374 0.91254 0.91657 0.89458 0.91438 0.91461 0.89860 0.91677 0.89204 0.89091 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 9.33 71.98 0.67 -4.72 16 2 C -0.15 -6.51 4.44 30.60 0.14 -6.38 16 3 C 0.20 9.45 1.46 44.17 0.06 9.52 16 4 H 0.02 1.23 6.17 -2.39 -0.01 1.22 16 5 C -0.51 -29.87 8.40 25.60 0.21 -29.66 16 6 H 0.03 2.26 7.11 -2.91 -0.02 2.24 16 7 C 0.02 1.33 5.10 84.65 0.43 1.76 16 8 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 9 Si 0.92 44.88 25.99 68.60 1.78 46.67 16 10 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.23 -10.24 5.29 99.48 0.53 -9.72 16 13 N -0.54 -22.56 4.56 -901.43 -4.11 -26.67 16 14 C 0.04 1.46 8.63 127.69 1.10 2.56 16 15 C 0.06 1.89 2.87 86.30 0.25 2.13 16 16 C 0.10 2.77 2.77 30.69 0.08 2.85 16 17 H 0.05 1.46 6.98 -2.39 -0.02 1.44 16 18 C -0.15 -3.03 5.44 30.75 0.17 -2.86 16 19 C -0.12 -2.00 6.02 30.71 0.18 -1.82 16 20 C -0.15 -2.76 6.14 30.68 0.19 -2.58 16 21 C 0.05 1.23 6.84 72.01 0.49 1.72 16 22 O -0.39 -13.18 10.35 -148.98 -1.54 -14.72 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.08 2.29 3.96 -2.38 -0.01 2.28 16 25 H 0.04 1.49 7.41 -2.38 -0.02 1.47 16 26 H 0.04 1.75 5.91 -2.39 -0.01 1.73 16 27 H 0.06 2.49 5.48 -2.39 -0.01 2.47 16 28 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.03 1.13 5.99 -2.39 -0.01 1.11 16 30 H 0.04 1.99 6.60 -2.38 -0.02 1.97 16 31 H 0.07 2.24 6.99 -2.38 -0.02 2.23 16 32 H 0.07 1.97 6.00 -2.39 -0.01 1.96 16 33 H 0.06 2.25 7.21 -2.39 -0.02 2.23 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -68.54 299.20 1.22 -67.32 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.81 Total: 14.03 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 3.99 Total: -27.47 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.82 Total: -85.82 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.54 Total: -14.72 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.78 Total: 46.67 kcal Total: -68.54 1.22 -67.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042464125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.122 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds